3-169511675-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169511675
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169511675
    reference: chr 3
allele count: 1
allele frequency: 1.096515274457773e-5
allele num: 91198
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270135
  ensembl transcript: ENST00000602913
  gene symbol: RP11-362K14.7
  hgvsc: ENST00000602913.1:n.393A>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1192-49T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.1009-49T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.156-49T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.134-49T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.3373T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.1096-49T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.351-49T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.1057-49T>C
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5596
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13894
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21207
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5906
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8778
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-169511677-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169511677
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169511677
    reference: chr 3
allele count: 2
allele frequency: 2.378969906030689e-5
allele num: 84070
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.351-51A>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.134-51A>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.156-51A>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.1057-51A>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.3371A>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270135
  ensembl transcript: ENST00000602913
  gene symbol: RP11-362K14.7
  hgvsc: ENST00000602913.1:n.395T>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1192-51A>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.1009-51A>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.1096-51A>C
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13744
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5666
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20801
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12697
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2108
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3590
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8243
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1575
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2203
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3109
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5959
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/3-169513226-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513226
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513226
    reference: chr 3
allele count: 1
allele frequency: 8.687342541916429e-6
allele num: 115110
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.1095+47T>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+776T>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.1056+47T>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.1008+47T>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.350+47T>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+1307T>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1822T>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.477A>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1191+47T>G
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4009
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10628
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8072
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15066
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3199
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2268
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1634
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2049
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

3-169513228-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513228
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513228
    reference: chr 3
allele count: 7
allele frequency: 6.086321427329322e-5
allele num: 115012
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.1095+45C>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.1008+45C>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.350+45C>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.479G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+1305C>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1191+45C>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+774C>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1820C>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.1056+45C>T
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8037
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4021
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15860
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2733
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13397
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9789
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22530
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3499
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2041
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3993
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum

3-169513229-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513229
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513229
    reference: chr 3
allele count: 10
allele frequency: 8.68628609151871e-5
allele num: 115124
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1819T>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+773T>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+1304T>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1191+44T>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.350+44T>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.1095+44T>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.1008+44T>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.1056+44T>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.480A>T
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16133
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9529
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13413
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8035
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3286
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3502
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2240
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4888
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

3-169513254-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513254
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513254
    reference: chr 3
allele count: 1
allele frequency: 8.554027236022719e-6
allele num: 116904
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1794C>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.1008+19C>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+1279C>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+748C>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.505G>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1191+19C>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.1056+19C>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.350+19C>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.1095+19C>G
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15807
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4377
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1577
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2551
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

3-169513256-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513256
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513256
    reference: chr 3
allele count: 1953
allele frequency: 1.663798538106354e-2
allele num: 117382
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1792T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.1056+17T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.350+17T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.507A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+746T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.1095+17T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.1008+17T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+1277T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1191+17T>C
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.75e1
  variant carriers: 103
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 4.25e1
  variant carriers: 137
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 26456
  bin: 2.25e1
  variant carriers: 303
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 3.75e1
  variant carriers: 206
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 4462
  bin: 3.25e1
  variant carriers: 262
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 1.75e1
  variant carriers: 195
genotype depth: GenotypeDepth
  all individuals: 3250
  bin: 1.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 5.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 9.75e1
  variant carriers: 112
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 16006
  bin: 2.75e1
  variant carriers: 332
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6662
  bin: 9.75e1
  variant carriers: 1864
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 40
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/3-169513260-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513260
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513260
    reference: chr 3
allele count: 469
allele frequency: 3.980648446783228e-3
allele num: 117820
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+1273T>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.1095+13T>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1191+13T>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+742T>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.511A>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.350+13T>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.1008+13T>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1788T>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.1056+13T>G
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 4.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 4.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 3.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 27298
  bin: 2.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 2638
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4424
  bin: 3.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 9.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16733
  bin: 2.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 948
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1516
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2048
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 11
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

3-169513272-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513272
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513272
    reference: chr 3
allele count: 2
allele frequency: 1.678584617450566e-5
allele num: 119148
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.1095+1G>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+730G>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.1008+1G>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.350+1G>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+1261G>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1191+1G>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1776G>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.1056+1G>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.523C>G
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17639
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4573
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4930
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5638
  bin: 6.75e1
  variant carriers: 0
hgvs: c.1191+1G>C
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD

3-169513279-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513279
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513279
    reference: chr 3
allele count: 3
allele frequency: 2.504926355165158e-5
allele num: 119764
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.344G>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.1002G>A
  hgvsp: ENST00000522830.1:c.1002G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.1089G>A
  hgvsp: ENST00000522526.2:c.1089G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1769G>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+723G>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1185G>A
  hgvsp: ENST00000446859.1:c.1185G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+1254G>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.1050G>A
  hgvsp: ENST00000316515.7:c.1050G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.530C>T
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18018
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4629
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42531
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4931
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Thr395Thr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

3-169513280-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513280
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513280
    reference: chr 3
allele count: 3
allele frequency: 2.502460753073856e-5
allele num: 119882
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1184C>T
  hgvsp: ENSP00000414635.1:p.Thr395Met
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+722C>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.531G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.1088C>T
  hgvsp: ENSP00000429278.2:p.Thr363Met
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1768C>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.1049C>T
  hgvsp: ENSP00000326150.7:p.Thr350Met
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.1001C>T
  hgvsp: ENSP00000429593.1:p.Thr334Met
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.343C>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+1253C>T
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29663
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18083
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4617
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42738
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr395Met
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/3-169513284-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513284
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513284
    reference: chr 3
allele count: 1
allele frequency: 8.328197611472925e-6
allele num: 120074
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1764G>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1180G>T
  hgvsp: ENSP00000414635.1:p.Ala394Ser
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.339G>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.1045G>T
  hgvsp: ENSP00000326150.7:p.Ala349Ser
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+1249G>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.535C>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.997G>T
  hgvsp: ENSP00000429593.1:p.Ala333Ser
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.1084G>T
  hgvsp: ENSP00000429278.2:p.Ala362Ser
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+718G>T
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29730
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4620
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1591
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5839
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala394Ser
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

3-169513300-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513300
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513301
    reference: chr 3
allele count: 1
allele frequency: 8.303440945927993e-6
allele num: 120432
alternate allele: TC
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.1067dupG
  hgvsp: ENSP00000429278.2:p.Asn357LysfsTer4
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1163dupG
  hgvsp: ENSP00000414635.1:p.Asn389LysfsTer4
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.555dupC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.322dupG
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.980dupG
  hgvsp: ENSP00000429593.1:p.Asn328LysfsTer4
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1747dupG
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.1028dupG
  hgvsp: ENSP00000326150.7:p.Asn344LysfsTer4
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+701dupG
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+1232dupG
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4662
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29628
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18648
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43181
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asn389LysfsTer4
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/3-169513301-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513301
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513301
    reference: chr 3
allele count: 1
allele frequency: 8.303303053954863e-6
allele num: 120434
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1747G>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.322G>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.1028G>T
  hgvsp: ENSP00000326150.7:p.Gly343Val
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.552C>A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1163G>T
  hgvsp: ENSP00000414635.1:p.Gly388Val
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+701G>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.1067G>T
  hgvsp: ENSP00000429278.2:p.Gly356Val
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.980G>T
  hgvsp: ENSP00000429593.1:p.Gly327Val
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+1232G>T
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29564
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18680
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4704
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly388Val
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum

3-169513303-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513303
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513303
    reference: chr 3
allele count: 1
allele frequency: 8.301924386072691e-6
allele num: 120454
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+1230G>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1745G>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.1026G>C
  hgvsp: ENSP00000326150.7:p.Trp342Cys
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.1065G>C
  hgvsp: ENSP00000429278.2:p.Trp355Cys
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.320G>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.978G>C
  hgvsp: ENSP00000429593.1:p.Trp326Cys
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.554C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+699G>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1161G>C
  hgvsp: ENSP00000414635.1:p.Trp387Cys
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29485
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18768
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Trp387Cys
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

3-169513309-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513309
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513309
    reference: chr 3
allele count: 5
allele frequency: 4.149033275246868e-5
allele num: 120510
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.972C>T
  hgvsp: ENST00000522830.1:c.972C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1739C>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.314C>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+1224C>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.1059C>T
  hgvsp: ENST00000522526.2:c.1059C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.1020C>T
  hgvsp: ENST00000316515.7:c.1020C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1155C>T
  hgvsp: ENST00000446859.1:c.1155C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.560G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+693C>T
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29353
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1590
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5926
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Tyr385Tyr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

3-169513310-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513310
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513310
    reference: chr 3
allele count: 2
allele frequency: 1.659310390601666e-5
allele num: 120532
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.313A>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.561T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.1019A>G
  hgvsp: ENSP00000326150.7:p.Tyr340Cys
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1154A>G
  hgvsp: ENSP00000414635.1:p.Tyr385Cys
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.1058A>G
  hgvsp: ENSP00000429278.2:p.Tyr353Cys
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+692A>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1738A>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.971A>G
  hgvsp: ENSP00000429593.1:p.Tyr324Cys
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+1223A>G
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18937
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29356
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43244
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr385Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum

3-169513313-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513313
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513313
    reference: chr 3
allele count: 1
allele frequency: 8.296138976920141e-6
allele num: 120538
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1735T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.310T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.1016T>C
  hgvsp: ENSP00000326150.7:p.Ile339Thr
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+1220T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.968T>C
  hgvsp: ENSP00000429593.1:p.Ile323Thr
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1151T>C
  hgvsp: ENSP00000414635.1:p.Ile384Thr
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.1055T>C
  hgvsp: ENSP00000429278.2:p.Ile352Thr
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.564A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+689T>C
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29257
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4682
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19005
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 967
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ile384Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
reference allele: A
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-169513316-TGAGA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513316
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513312
    reference: chr 3
allele count: 7
allele frequency: 5.807297283844099e-5
allele num: 120538
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.1048_1051delTCTC
  hgvsp: ENSP00000429278.2:p.Ser350IlefsTer15
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1728_1731delTCTC
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.1009_1012delTCTC
  hgvsp: ENSP00000326150.7:p.Ser337IlefsTer15
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.961_964delTCTC
  hgvsp: ENSP00000429593.1:p.Ser321IlefsTer15
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.303_306delTCTC
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+1213_155+1216delTCTC
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1144_1147delTCTC
  hgvsp: ENSP00000414635.1:p.Ser382IlefsTer15
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.570_573delGAGA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+682_133+685delTCTC
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19144
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28955
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4715
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1421
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser382IlefsTer15
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: TGAGA
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum

3-169513317-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513317
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513317
    reference: chr 3
allele count: 1
allele frequency: 8.297240337863626e-6
allele num: 120522
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+685C>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+1216C>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.306C>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.964C>T
  hgvsp: ENSP00000429593.1:p.His322Tyr
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.1051C>T
  hgvsp: ENSP00000429278.2:p.His351Tyr
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.1012C>T
  hgvsp: ENSP00000326150.7:p.His338Tyr
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1731C>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1147C>T
  hgvsp: ENSP00000414635.1:p.His383Tyr
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.568G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19146
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28940
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1583
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 4.25e1
  variant carriers: 0
hgvs: p.His383Tyr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-169513320-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513320
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513320
    reference: chr 3
allele count: 1925
allele frequency: 1.596900768171487e-2
allele num: 120546
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.1048T>A
  hgvsp: ENSP00000429278.2:p.Ser350Thr
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.571A>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1144T>A
  hgvsp: ENSP00000414635.1:p.Ser382Thr
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.961T>A
  hgvsp: ENSP00000429593.1:p.Ser321Thr
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+682T>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+1213T>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.303T>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.1009T>A
  hgvsp: ENSP00000326150.7:p.Ser337Thr
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1728T>A
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 9.75e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 4.75e1
  variant carriers: 273
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 5.75e1
  variant carriers: 154
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 4.25e1
  variant carriers: 274
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.25e1
  variant carriers: 232
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 6.25e1
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18798
  bin: 2.75e1
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 28138
  bin: 2.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 3.75e1
  variant carriers: 266
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4593
  bin: 3.25e1
  variant carriers: 163
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 5607
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 2
hgvs: p.Ser382Thr
num of homozygotes: 86
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/3-169513324-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513324
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513324
    reference: chr 3
allele count: 1
allele frequency: 8.29228651508367e-6
allele num: 120594
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+1209T>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+678T>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1724T>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.575A>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.1005T>G
  hgvsp: ENST00000316515.7:c.1005T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.1044T>G
  hgvsp: ENST00000522526.2:c.1044T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.957T>G
  hgvsp: ENST00000522830.1:c.957T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1140T>G
  hgvsp: ENST00000446859.1:c.1140T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.299T>G
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19751
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4762
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28394
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4848
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1378
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr380Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

3-169513325-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513325
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513325
    reference: chr 3
allele count: 1
allele frequency: 8.292148993333113e-6
allele num: 120596
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.298C>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+1208C>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1139C>G
  hgvsp: ENSP00000414635.1:p.Thr380Ser
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.956C>G
  hgvsp: ENSP00000429593.1:p.Thr319Ser
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.1043C>G
  hgvsp: ENSP00000429278.2:p.Thr348Ser
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.576G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+677C>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1723C>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.1004C>G
  hgvsp: ENSP00000326150.7:p.Thr335Ser
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28342
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4775
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19740
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr380Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

3-169513330-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513330
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513330
    reference: chr 3
allele count: 1
allele frequency: 8.294074713025015e-6
allele num: 120568
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.581A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1718T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1134T>C
  hgvsp: ENST00000446859.1:c.1134T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.999T>C
  hgvsp: ENST00000316515.7:c.999T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.293T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.951T>C
  hgvsp: ENST00000522830.1:c.951T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.1038T>C
  hgvsp: ENST00000522526.2:c.1038T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+672T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+1203T>C
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4773
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4847
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1367
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42832
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asn378Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

3-169513332-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513332
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513332
    reference: chr 3
allele count: 1
allele frequency: 8.293524416135881e-6
allele num: 120576
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.997A>G
  hgvsp: ENSP00000326150.7:p.Asn333Asp
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.949A>G
  hgvsp: ENSP00000429593.1:p.Asn317Asp
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1716A>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.1036A>G
  hgvsp: ENSP00000429278.2:p.Asn346Asp
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.291A>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+1201A>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1132A>G
  hgvsp: ENSP00000414635.1:p.Asn378Asp
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+670A>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.583T>C
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28124
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4760
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19849
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1475
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asn378Asp
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

3-169513334-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513334
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513334
    reference: chr 3
allele count: 4
allele frequency: 3.317574852782616e-5
allele num: 120570
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.1034C>G
  hgvsp: ENSP00000429278.2:p.Thr345Arg
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.289C>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.585G>C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1130C>G
  hgvsp: ENSP00000414635.1:p.Thr377Arg
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.947C>G
  hgvsp: ENSP00000429593.1:p.Thr316Arg
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+1199C>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1714C>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+668C>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.995C>G
  hgvsp: ENSP00000326150.7:p.Thr332Arg
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4773
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28100
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4849
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr377Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

3-169513345-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513345
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513345
    reference: chr 3
allele count: 1
allele frequency: 8.296827293243064e-6
allele num: 120528
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+1188A>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.278A>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+657A>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1703A>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1119A>G
  hgvsp: ENST00000446859.1:c.1119A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.984A>G
  hgvsp: ENST00000316515.7:c.984A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.936A>G
  hgvsp: ENST00000522830.1:c.936A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.596T>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.1023A>G
  hgvsp: ENST00000522526.2:c.1023A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27890
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gln373Gln
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD

3-169513347-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513347
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513347
    reference: chr 3
allele count: 1
allele frequency: 8.298479718515568e-6
allele num: 120504
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+655C>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.982C>A
  hgvsp: ENSP00000326150.7:p.Gln328Lys
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1701C>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.276C>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1117C>A
  hgvsp: ENSP00000414635.1:p.Gln373Lys
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.1021C>A
  hgvsp: ENSP00000429278.2:p.Gln341Lys
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.934C>A
  hgvsp: ENSP00000429593.1:p.Gln312Lys
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+1186C>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.598G>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19980
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27817
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4764
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42992
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln373Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

3-169513358-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513358
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513358
    reference: chr 3
allele count: 22
allele frequency: 1.827515741556047e-4
allele num: 120382
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.1010T>C
  hgvsp: ENSP00000429278.2:p.Val337Ala
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.609A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+644T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.265T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.971T>C
  hgvsp: ENSP00000326150.7:p.Val324Ala
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1690T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.923T>C
  hgvsp: ENSP00000429593.1:p.Val308Ala
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1106T>C
  hgvsp: ENSP00000414635.1:p.Val369Ala
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+1175T>C
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4747
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19881
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27830
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5729
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val369Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum

3-169513364-CCTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513364
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513361
    reference: chr 3
allele count: 1
allele frequency: 8.31282835672009e-6
allele num: 120296
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.914_916delAAG
  hgvsp: ENSP00000429593.1:p.Glu305del
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.962_964delAAG
  hgvsp: ENSP00000326150.7:p.Glu321del
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.1001_1003delAAG
  hgvsp: ENSP00000429278.2:p.Glu334del
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+635_133+637delAAG
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1097_1099delAAG
  hgvsp: ENSP00000414635.1:p.Glu366del
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1681_1683delAAG
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.618_620delTCT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+1166_155+1168delAAG
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.256_258delAAG
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 27736
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19901
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu366del
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: CCTT
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

3-169513376-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513376
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513376
    reference: chr 3
allele count: 6
allele frequency: 4.996585666461251e-5
allele num: 120082
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1088T>C
  hgvsp: ENSP00000414635.1:p.Ile363Thr
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+626T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.953T>C
  hgvsp: ENSP00000326150.7:p.Ile318Thr
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.627A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1672T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.905T>C
  hgvsp: ENSP00000429593.1:p.Ile302Thr
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+1157T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.992T>C
  hgvsp: ENSP00000429278.2:p.Ile331Thr
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.247T>C
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19965
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile363Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ

3-169513391-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513391
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513391
    reference: chr 3
allele count: 6
allele frequency: 5.021340697966357e-5
allele num: 119490
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.977T>C
  hgvsp: ENSP00000429278.2:p.Val326Ala
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+611T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.642A>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.890T>C
  hgvsp: ENSP00000429593.1:p.Val297Ala
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+1142T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1073T>C
  hgvsp: ENSP00000414635.1:p.Val358Ala
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.232T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.938T>C
  hgvsp: ENSP00000326150.7:p.Val313Ala
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1657T>C
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26770
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19787
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val358Ala
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

3-169513399-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513399
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513399
    reference: chr 3
allele count: 7
allele frequency: 5.882352941176471e-5
allele num: 119000
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.224G>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+603G>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1065G>A
  hgvsp: ENST00000446859.1:c.1065G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.882G>A
  hgvsp: ENST00000522830.1:c.882G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.969G>A
  hgvsp: ENST00000522526.2:c.969G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.650C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.930G>A
  hgvsp: ENST00000316515.7:c.930G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+1134G>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1649G>A
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19522
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26024
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4587
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2534
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1316
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4847
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
hgvs: c.1065G>A
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

3-169513400-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513400
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513400
    reference: chr 3
allele count: 2
allele frequency: 1.681718043152885e-5
allele num: 118926
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+1133G>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.882-1G>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.651C>G
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1065-1G>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+602G>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.224-1G>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.930-1G>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.969-1G>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1648G>C
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25884
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19494
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1314
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4843
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2633
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 5.25e1
  variant carriers: 0
hgvs: c.1065-1G>C
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

3-169513409-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513409
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513409
    reference: chr 3
allele count: 1
allele frequency: 8.480037990570198e-6
allele num: 117924
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.660A>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1065-10T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.930-10T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+1124T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1639T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+593T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.969-10T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.224-10T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.882-10T>C
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4457
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23275
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4837
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18663
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1150
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1133
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4841
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ

3-169513417-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513417
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513417
    reference: chr 3
allele count: 1
allele frequency: 8.532714427113554e-6
allele num: 117196
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.969-18T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1065-18T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1631T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.668A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.882-18T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+1116T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+585T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.930-18T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.224-18T>C
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19922
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16992
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4266
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8064
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32581
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1483
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2097
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

3-169513419-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513419
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513419
    reference: chr 3
allele count: 1
allele frequency: 8.539855505644844e-6
allele num: 117098
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.930-20T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.670A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+1114T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.224-20T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.882-20T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1629T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1065-20T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+583T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.969-20T>C
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8459
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16781
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19525
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4189
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1610
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2843
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32470
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4840
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/3-169513420-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513420
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513420
    reference: chr 3
allele count: 1
allele frequency: 8.545109633756601e-6
allele num: 117026
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.224-21T>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.930-21T>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.671A>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+582T>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1628T>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.882-21T>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1065-21T>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+1113T>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.969-21T>G
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16243
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18662
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30598
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2440
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4569
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

3-169513430-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513430
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513430
    reference: chr 3
allele count: 1
allele frequency: 8.590622476504648e-6
allele num: 116406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+1103T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.969-31T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+572T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1618T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.224-31T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.930-31T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1065-31T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.681A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.882-31T>C
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13357
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8349
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12066
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3663
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14459
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3896
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 905
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

3-169513442-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513442
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513442
    reference: chr 3
allele count: 1
allele frequency: 8.757487651942411e-6
allele num: 114188
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.969-43T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.224-43T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1606T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.930-43T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+1091T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.882-43T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+560T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.693A>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1065-43T>C
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16484
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12506
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11834
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2977
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2839
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7456
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11514
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4266
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4083
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7642
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-169513940-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513940
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513940
    reference: chr 3
allele count: 1
allele frequency: 9.696875666660202e-6
allele num: 103126
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+62A>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.929+62A>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1108A>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522080
  gene symbol: LRRC34
  hgvsc: ENST00000522080.1:n.1103A>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.881+62A>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1064+62A>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.1191T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.223+62A>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.968+62A>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+593A>G
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7864
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13768
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7646
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5486
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6057
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3426
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
reference allele: T
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

3-169513942-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513942
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513942
    reference: chr 3
allele count: 1
allele frequency: 9.685980511807211e-6
allele num: 103242
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.968+60T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.223+60T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.881+60T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.929+60T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1064+60T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1106T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.1193A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+591T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+60T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522080
  gene symbol: LRRC34
  hgvsc: ENST00000522080.1:n.1101T>C
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3306
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7860
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16266
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6758
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5836
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3331
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2134
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

3-169513944-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513944
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513944
    reference: chr 3
allele count: 1
allele frequency: 9.664637092877163e-6
allele num: 103470
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522080
  gene symbol: LRRC34
  hgvsc: ENST00000522080.1:n.1099C>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.881+58C>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+589C>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1104C>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+58C>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1064+58C>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.968+58C>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.1195G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.929+58C>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.223+58C>G
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12405
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6990
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7861
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17922
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5569
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1788
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3665
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

3-169513944-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513944
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513944
    reference: chr 3
allele count: 1
allele frequency: 9.664637092877163e-6
allele num: 103470
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1064+58C>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.929+58C>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.881+58C>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+589C>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.223+58C>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1104C>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522080
  gene symbol: LRRC34
  hgvsc: ENST00000522080.1:n.1099C>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.1195G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.968+58C>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+58C>A
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17922
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6990
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12405
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7861
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1768
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4551
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5132
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

3-169513956-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513956
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513956
    reference: chr 3
allele count: 1
allele frequency: 9.333233778839693e-6
allele num: 107144
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1064+46T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.881+46T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.223+46T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.929+46T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.968+46T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+46T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522080
  gene symbol: LRRC34
  hgvsc: ENST00000522080.1:n.1087T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000524327
  gene symbol: LRRC34
  hgvsc: ENST00000524327.1:n.910T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+577T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.1207A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1092T>C
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6605
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5996
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3713
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS

3-169513958-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513958
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513958
    reference: chr 3
allele count: 4
allele frequency: 3.696037847427558e-5
allele num: 108224
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522080
  gene symbol: LRRC34
  hgvsc: ENST00000522080.1:n.1085T>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+575T>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.223+44T>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.1209A>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000524327
  gene symbol: LRRC34
  hgvsc: ENST00000524327.1:n.908T>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1064+44T>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1090T>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.881+44T>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.929+44T>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.968+44T>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+44T>A
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4997
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8433
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3760
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29807
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1553
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6327
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum

3-169513966-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513966
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513966
    reference: chr 3
allele count: 2
allele frequency: 1.784598911394664e-5
allele num: 112070
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+567A>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.223+36A>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000524327
  gene symbol: LRRC34
  hgvsc: ENST00000524327.1:n.900A>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1064+36A>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.968+36A>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+36A>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.1217T>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.881+36A>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1082A>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522080
  gene symbol: LRRC34
  hgvsc: ENST00000522080.1:n.1077A>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.929+36A>T
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4394
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33552
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9374
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3983
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1681
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4823
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ

3-169513972-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513972
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513972
    reference: chr 3
allele count: 1
allele frequency: 8.672124323574303e-6
allele num: 115312
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.1223T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.881+30A>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.223+30A>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1064+30A>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.968+30A>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000524327
  gene symbol: LRRC34
  hgvsc: ENST00000524327.1:n.894A>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1076A>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522080
  gene symbol: LRRC34
  hgvsc: ENST00000522080.1:n.1071A>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+30A>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.929+30A>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+561A>G
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9883
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4177
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38825
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5050
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

3-169513982-A-ATTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513982
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169513985
    reference: chr 3
allele count: 16
allele frequency: 1.349983125210935e-4
allele num: 118520
alternate allele: ATTT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522080
  gene symbol: LRRC34
  hgvsc: ENST00000522080.1:n.1060_1061insAAA
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+19_133+20insAAA
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.881+19_881+20insAAA
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.929+19_929+20insAAA
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+550_155+551insAAA
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.1233_1234insTTT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.223+19_223+20insAAA
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.968+19_968+20insAAA
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000524327
  gene symbol: LRRC34
  hgvsc: ENST00000524327.1:n.883_884insAAA
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1064+19_1064+20insAAA
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1065_1066insAAA
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4390
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 37731
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10412
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS

3-169513985-T-TCAAATAATCAAATAATCAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169513985
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169514004
    reference: chr 3
allele count: 16
allele frequency: 1.344402245151749e-4
allele num: 119012
alternate allele: TCAAATAATCAAATAATCAA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522080
  gene symbol: LRRC34
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000524327
  gene symbol: LRRC34
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4413
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD

3-169514001-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169514001
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169514001
    reference: chr 3
allele count: 3
allele frequency: 2.485377694563651e-5
allele num: 120706
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.929+1G>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1047G>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133+1G>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.881+1G>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.223+1G>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.968+1G>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000270096
  ensembl transcript: ENST00000602835
  gene symbol: RP11-362K14.6
  hgvsc: ENST00000602835.1:n.1252C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522080
  gene symbol: LRRC34
  hgvsc: ENST00000522080.1:n.1042G>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1064+1G>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000524327
  gene symbol: LRRC34
  hgvsc: ENST00000524327.1:n.865G>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+532G>A
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38564
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10873
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
hgvs: c.1064+1G>A
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD

3-169514002-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169514002
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169514002
    reference: chr 3
allele count: 1
allele frequency: 8.280064915708939e-6
allele num: 120772
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.1046C>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.929C>T
  hgvsp: ENSP00000326150.7:p.Ala310Val
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.133C>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.223C>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.968C>T
  hgvsp: ENSP00000429278.2:p.Ala323Val
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+531C>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1064C>T
  hgvsp: ENSP00000414635.1:p.Ala355Val
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000524327
  gene symbol: LRRC34
  hgvsc: ENST00000524327.1:n.864C>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.881C>T
  hgvsp: ENSP00000429593.1:p.Ala294Val
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522080
  gene symbol: LRRC34
  hgvsc: ENST00000522080.1:n.1041C>T
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38577
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5440
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala355Val
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

3-169514051-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169514051
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169514051
    reference: chr 3
allele count: 2
allele frequency: 1.650083329208125e-5
allele num: 121206
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.84G>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1015G>A
  hgvsp: ENSP00000414635.1:p.Ala339Thr
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.832G>A
  hgvsp: ENSP00000429593.1:p.Ala278Thr
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+482G>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.919G>A
  hgvsp: ENSP00000429278.2:p.Ala307Thr
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.997G>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.880G>A
  hgvsp: ENSP00000326150.7:p.Ala294Thr
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.174G>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522080
  gene symbol: LRRC34
  hgvsc: ENST00000522080.1:n.992G>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000524327
  gene symbol: LRRC34
  hgvsc: ENST00000524327.1:n.815G>A
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11064
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5474
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala339Thr
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD

3-169514052-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169514052
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169514052
    reference: chr 3
allele count: 5
allele frequency: 4.125004125004125e-5
allele num: 121212
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.996C>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.918C>T
  hgvsp: ENST00000522526.2:c.918C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.879C>T
  hgvsp: ENST00000316515.7:c.879C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.831C>T
  hgvsp: ENST00000522830.1:c.831C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1014C>T
  hgvsp: ENST00000446859.1:c.1014C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.83C>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.173C>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000524327
  gene symbol: LRRC34
  hgvsc: ENST00000524327.1:n.814C>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522080
  gene symbol: LRRC34
  hgvsc: ENST00000522080.1:n.991C>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+481C>T
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38551
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11077
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4615
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly338Gly
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff

3-169514065-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169514065
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169514065
    reference: chr 3
allele count: 2
allele frequency: 1.649620587264929e-5
allele num: 121240
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522080
  gene symbol: LRRC34
  hgvsc: ENST00000522080.1:n.978T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.160T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.818T>C
  hgvsp: ENSP00000429593.1:p.Ile273Thr
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.905T>C
  hgvsp: ENSP00000429278.2:p.Ile302Thr
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000524327
  gene symbol: LRRC34
  hgvsc: ENST00000524327.1:n.801T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.70T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+468T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.866T>C
  hgvsp: ENSP00000326150.7:p.Ile289Thr
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.983T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.1001T>C
  hgvsp: ENSP00000414635.1:p.Ile334Thr
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4619
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ile334Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

3-169514068-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169514068
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169514068
    reference: chr 3
allele count: 7
allele frequency: 5.773386338518384e-5
allele num: 121246
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.815G>C
  hgvsp: ENSP00000429593.1:p.Arg272Thr
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.902G>C
  hgvsp: ENSP00000429278.2:p.Arg301Thr
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.980G>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.998G>C
  hgvsp: ENSP00000414635.1:p.Arg333Thr
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.158-1G>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.863G>C
  hgvsp: ENSP00000326150.7:p.Arg288Thr
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000524327
  gene symbol: LRRC34
  hgvsc: ENST00000524327.1:n.798G>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+465G>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522080
  gene symbol: LRRC34
  hgvsc: ENST00000522080.1:n.975G>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.67G>C
  variant of: http://identifiers.org/hgnc/28408
canonical: false
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38491
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4622
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
hgvs: n.158-1G>C
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

3-169514069-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169514069
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169514069
    reference: chr 3
allele count: 1
allele frequency: 8.247014580721778e-6
allele num: 121256
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+464A>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.997A>G
  hgvsp: ENSP00000414635.1:p.Arg333Gly
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.66A>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.814A>G
  hgvsp: ENSP00000429593.1:p.Arg272Gly
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.901A>G
  hgvsp: ENSP00000429278.2:p.Arg301Gly
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.862A>G
  hgvsp: ENSP00000326150.7:p.Arg288Gly
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.158-2A>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.979A>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522080
  gene symbol: LRRC34
  hgvsc: ENST00000522080.1:n.974A>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000524327
  gene symbol: LRRC34
  hgvsc: ENST00000524327.1:n.797A>G
  variant of: http://identifiers.org/hgnc/28408
canonical: false
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11106
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38491
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4625
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
hgvs: n.158-2A>G
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

3-169514072-TAAAGG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169514072
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169514067
    reference: chr 3
allele count: 421
allele frequency: 3.471420561364161e-3
allele num: 121276
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.854_858delCCTTT
  hgvsp: ENSP00000326150.7:p.Ser285Ter
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.806_810delCCTTT
  hgvsp: ENSP00000429593.1:p.Ser269Ter
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000524327
  gene symbol: LRRC34
  hgvsc: ENST00000524327.1:n.789_793delCCTTT
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.893_897delCCTTT
  hgvsp: ENSP00000429278.2:p.Ser298Ter
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.58_62delCCTTT
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.989_993delCCTTT
  hgvsp: ENSP00000414635.1:p.Ser330Ter
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522080
  gene symbol: LRRC34
  hgvsc: ENST00000522080.1:n.966_970delCCTTT
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+456_155+460delCCTTT
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.971_975delCCTTT
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.158-10_158-6delCCTTT
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4588
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 11019
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 38318
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 9.75e1
  variant carriers: 182
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 5.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 6.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser330Ter
num of homozygotes: 9
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: TAAAGG
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum

3-169514075-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169514075
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169514074
    reference: chr 3
allele count: 5
allele frequency: 4.135717712451819e-5
allele num: 120898
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.894delC
  hgvsp: ENSP00000429278.2:p.Phe299LeufsTer4
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+457delC
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.158-9delC
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.990delC
  hgvsp: ENSP00000414635.1:p.Phe331LeufsTer4
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.807delC
  hgvsp: ENSP00000429593.1:p.Phe270LeufsTer4
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.855delC
  hgvsp: ENSP00000326150.7:p.Phe286LeufsTer4
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.59delC
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000524327
  gene symbol: LRRC34
  hgvsc: ENST00000524327.1:n.790delC
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522080
  gene symbol: LRRC34
  hgvsc: ENST00000522080.1:n.967delC
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.972delC
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38310
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11021
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5434
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Phe331LeufsTer4
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: AG
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-169514077-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169514077
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169514077
    reference: chr 3
allele count: 786
allele frequency: 6.526396200408523e-3
allele num: 120434
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000524327
  gene symbol: LRRC34
  hgvsc: ENST00000524327.1:n.789C>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.893C>T
  hgvsp: ENSP00000429278.2:p.Ser298Phe
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+456C>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.58C>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.854C>T
  hgvsp: ENSP00000326150.7:p.Ser285Phe
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.158-10C>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.989C>T
  hgvsp: ENSP00000414635.1:p.Ser330Phe
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.971C>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.806C>T
  hgvsp: ENSP00000429593.1:p.Ser269Phe
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522080
  gene symbol: LRRC34
  hgvsc: ENST00000522080.1:n.966C>T
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 6.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 10908
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 5.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 4.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 6.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 37827
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 9.75e1
  variant carriers: 266
genotype depth: GenotypeDepth
  all individuals: 4518
  bin: 3.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 1
hgvs: p.Ser330Phe
num of homozygotes: 9
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

3-169514079-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169514079
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169514079
    reference: chr 3
allele count: 50
allele frequency: 4.124051468162323e-4
allele num: 121240
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.804T>C
  hgvsp: ENST00000522830.1:c.804T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.852T>C
  hgvsp: ENST00000316515.7:c.852T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.158-12T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.969T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.987T>C
  hgvsp: ENST00000446859.1:c.987T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+454T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.891T>C
  hgvsp: ENST00000522526.2:c.891T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.56T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522080
  gene symbol: LRRC34
  hgvsc: ENST00000522080.1:n.964T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000524327
  gene symbol: LRRC34
  hgvsc: ENST00000524327.1:n.787T>C
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 37869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4822
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11224
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42392
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1564
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu329Leu
num of homozygotes: 1
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

3-169514081-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169514081
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169514081
    reference: chr 3
allele count: 15
allele frequency: 1.236929775373553e-4
allele num: 121268
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.802C>T
  hgvsp: ENSP00000429593.1:p.Leu268Phe
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.967C>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522080
  gene symbol: LRRC34
  hgvsc: ENST00000522080.1:n.962C>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000524327
  gene symbol: LRRC34
  hgvsc: ENST00000524327.1:n.785C>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.158-14C>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.850C>T
  hgvsp: ENSP00000326150.7:p.Leu284Phe
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.889C>T
  hgvsp: ENSP00000429278.2:p.Leu297Phe
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.54C>T
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.985C>T
  hgvsp: ENSP00000414635.1:p.Leu329Phe
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+452C>T
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11259
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4834
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5311
  bin: 9.75e1
  variant carriers: 15
hgvs: p.Leu329Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: FS

3-169514098-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169514098
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169514098
    reference: chr 3
allele count: 1
allele frequency: 8.245790523937529e-6
allele num: 121274
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522080
  gene symbol: LRRC34
  hgvsc: ENST00000522080.1:n.945C>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.833C>G
  hgvsp: ENSP00000326150.7:p.Thr278Ser
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.872C>G
  hgvsp: ENSP00000429278.2:p.Thr291Ser
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.37C>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.968C>G
  hgvsp: ENSP00000414635.1:p.Thr323Ser
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+435C>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.950C>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.158-31C>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000524327
  gene symbol: LRRC34
  hgvsc: ENST00000524327.1:n.768C>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.785C>G
  hgvsp: ENSP00000429593.1:p.Thr262Ser
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4850
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42463
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr323Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS

3-169514100-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169514100
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169514100
    reference: chr 3
allele count: 1
allele frequency: 8.245654540057389e-6
allele num: 121276
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.831T>C
  hgvsp: ENST00000316515.7:c.831T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.158-33T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.870T>C
  hgvsp: ENST00000522526.2:c.870T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+433T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522080
  gene symbol: LRRC34
  hgvsc: ENST00000522080.1:n.943T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.966T>C
  hgvsp: ENST00000446859.1:c.966T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.948T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.783T>C
  hgvsp: ENST00000522830.1:c.783T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000524327
  gene symbol: LRRC34
  hgvsc: ENST00000524327.1:n.766T>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.35T>C
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11287
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2254
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr322Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

3-169514103-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169514103
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169514103
    reference: chr 3
allele count: 1
allele frequency: 8.245654540057389e-6
allele num: 121276
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.158-36C>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522080
  gene symbol: LRRC34
  hgvsc: ENST00000522080.1:n.940C>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.32C>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.828C>G
  hgvsp: ENSP00000326150.7:p.Asn276Lys
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.963C>G
  hgvsp: ENSP00000414635.1:p.Asn321Lys
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.780C>G
  hgvsp: ENSP00000429593.1:p.Asn260Lys
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+430C>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.867C>G
  hgvsp: ENSP00000429278.2:p.Asn289Lys
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000524327
  gene symbol: LRRC34
  hgvsc: ENST00000524327.1:n.763C>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.945C>G
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37859
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn321Lys
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

3-169514103-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169514103
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169514103
    reference: chr 3
allele count: 1
allele frequency: 8.245654540057389e-6
allele num: 121276
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.945C>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.780C>A
  hgvsp: ENSP00000429593.1:p.Asn260Lys
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.867C>A
  hgvsp: ENSP00000429278.2:p.Asn289Lys
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522080
  gene symbol: LRRC34
  hgvsc: ENST00000522080.1:n.940C>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.828C>A
  hgvsp: ENSP00000326150.7:p.Asn276Lys
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000524327
  gene symbol: LRRC34
  hgvsc: ENST00000524327.1:n.763C>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+430C>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.32C>A
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.963C>A
  hgvsp: ENSP00000414635.1:p.Asn321Lys
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.158-36C>A
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37859
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2255
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asn321Lys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS

3-169514107-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169514107
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169514107
    reference: chr 3
allele count: 1
allele frequency: 8.245926512302922e-6
allele num: 121272
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.863G>C
  hgvsp: ENSP00000429278.2:p.Ser288Thr
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.959G>C
  hgvsp: ENSP00000414635.1:p.Ser320Thr
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.158-40G>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.28G>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+426G>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000524327
  gene symbol: LRRC34
  hgvsc: ENST00000524327.1:n.759G>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.824G>C
  hgvsp: ENSP00000326150.7:p.Ser275Thr
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.776G>C
  hgvsp: ENSP00000429593.1:p.Ser259Thr
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.941G>C
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522080
  gene symbol: LRRC34
  hgvsc: ENST00000522080.1:n.936G>C
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37859
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11296
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1822
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser320Thr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/3-169514118-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169514118
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169514118
    reference: chr 3
allele count: 1
allele frequency: 8.247014580721778e-6
allele num: 121256
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000524327
  gene symbol: LRRC34
  hgvsc: ENST00000524327.1:n.748T>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522080
  gene symbol: LRRC34
  hgvsc: ENST00000522080.1:n.925T>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.813T>G
  hgvsp: ENSP00000326150.7:p.Asp271Glu
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.852T>G
  hgvsp: ENSP00000429278.2:p.Asp284Glu
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+415T>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.765T>G
  hgvsp: ENSP00000429593.1:p.Asp255Glu
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.158-51T>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000518252
  gene symbol: LRRC34
  hgvsc: ENST00000518252.1:n.17T>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.948T>G
  hgvsp: ENSP00000414635.1:p.Asp316Glu
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.930T>G
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37843
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11295
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4850
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5300
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 42458
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp316Glu
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

3-169514143-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 169514143
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 169514143
    reference: chr 3
allele count: 5
allele frequency: 4.12847824291966e-5
allele num: 121110
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000436883
  ensembl transcript: ENST00000528597
  gene symbol: LRRC34
  hgvsc: ENST00000528597.1:c.155+390A>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000524327
  gene symbol: LRRC34
  hgvsc: ENST00000524327.1:n.723A>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522080
  gene symbol: LRRC34
  hgvsc: ENST00000522080.1:n.900A>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000414635
  ensembl transcript: ENST00000446859
  gene symbol: LRRC34
  hgvsc: ENST00000446859.1:c.923A>G
  hgvsp: ENSP00000414635.1:p.His308Arg
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000326150
  ensembl transcript: ENST00000316515
  gene symbol: LRRC34
  hgvsc: ENST00000316515.7:c.788A>G
  hgvsp: ENSP00000326150.7:p.His263Arg
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522596
  gene symbol: LRRC34
  hgvsc: ENST00000522596.2:n.905A>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171757
  ensembl transcript: ENST00000522329
  gene symbol: LRRC34
  hgvsc: ENST00000522329.1:n.158-76A>G
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429278
  ensembl transcript: ENST00000522526
  gene symbol: LRRC34
  hgvsc: ENST00000522526.2:c.827A>G
  hgvsp: ENSP00000429278.2:p.His276Arg
  variant of: http://identifiers.org/hgnc/28408
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171757
  ensembl protein: ENSP00000429593
  ensembl transcript: ENST00000522830
  gene symbol: LRRC34
  hgvsc: ENST00000522830.1:c.740A>G
  hgvsp: ENSP00000429593.1:p.His247Arg
  variant of: http://identifiers.org/hgnc/28408
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37663
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4838
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42288
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
hgvs: p.His308Arg
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

GenotypeQuality
all individuals: 2111
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3811
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1575
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2871
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2419
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2602
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3522
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6261
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17212
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48642
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.881462799495586e-5
allele num: 12688
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6152
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5884
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -3.879e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.68e-1

DP
type: SiteQuality
SIO_000300: 9.35492e5

ClippingRankSum
type: SiteQuality
SIO_000300: 3.23e-1

QD
type: SiteQuality
SIO_000300: 8.699999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e0

GenotypeQuality
all individuals: 355
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12226
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5977
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2846
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1114
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1756
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8708
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5648
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 704
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8694
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.488531801247812e-5
allele num: 44558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11748
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7080
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.08e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.07e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.30739e5

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.0e-1

QD
type: SiteQuality
SIO_000300: 8.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.07e0

GenotypeQuality
all individuals: 1092
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5075
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3527
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3991
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3287
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1399
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21050
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4932
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4380
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 727
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8360
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10030
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.008690776562938e-5
allele num: 14268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63774
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.074e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.49e0

VQSLOD
type: SiteQuality
SIO_000300: 5.649999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.95e0

QD
type: SiteQuality
SIO_000300: 1.219e1

DP
type: SiteQuality
SIO_000300: 1.529452e6

GenotypeQuality
all individuals: 3287
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5078
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1067
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4885
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4162
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1369
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2274
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2437
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1587
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63734
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11320
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.922644163150492e-4
allele num: 14220
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10038
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.245e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.75e-1

QD
type: SiteQuality
SIO_000300: 1.059e1

VQSLOD
type: SiteQuality
SIO_000300: 1.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

DP
type: SiteQuality
SIO_000300: 1.533984e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.384e0

MQRankSum
type: SiteQuality
SIO_000300: 1.78e-1

GenotypeQuality
all individuals: 209
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3987
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1590
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2408
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5076
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 2017
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4053
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1054
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22441
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14250
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 9.97207818109294e-4
allele num: 10028
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63796
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11322
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.292e1

MQ
type: SiteQuality
SIO_000300: 5.976e1

DP
type: SiteQuality
SIO_000300: 1.535252e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.19e0

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.18e-1

FS
type: SiteQuality
SIO_000300: 2.7e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.55e-1

GenotypeQuality
all individuals: 5299
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1019
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36844
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1349
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1631
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1309
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5070
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.552168379225778e-5
allele num: 64426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10180
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15062
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11386
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.729e0

MQRankSum
type: SiteQuality
SIO_000300: -7.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.414e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 6.57e0

VQSLOD
type: SiteQuality
SIO_000300: -2.352e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.67e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.643152e6

GenotypeQuality
all individuals: 951
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 291
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 928
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 466
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 359
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2323
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1483
bin: 7.75e1
variant carriers: 11

GenotypeQuality
all individuals: 1421
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5174
bin: 6.75e1
variant carriers: 5

GenotypeQuality
all individuals: 604
bin: 5.25e1
variant carriers: 6

GenotypeQuality
all individuals: 36508
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 579
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1287
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 437
bin: 8.75e1
variant carriers: 6

European (Non-Finnish)
type: Population
allele count: 333
allele frequency: 5.155916142817329e-3
allele num: 64586
num of homozygotes: 2

Other
type: Population
allele count: 11
allele frequency: 1.252847380410023e-2
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 8
allele frequency: 1.225114854517611e-3
allele num: 6530
num of homozygotes: 0

Latino
type: Population
allele count: 97
allele frequency: 8.511758511758512e-3
allele num: 11396
num of homozygotes: 0

South Asian
type: Population
allele count: 883
allele frequency: 5.774261051530212e-2
allele num: 15292
num of homozygotes: 26

East Asian
type: Population
allele count: 2
allele frequency: 2.358490566037736e-4
allele num: 8480
num of homozygotes: 0

African
type: Population
allele count: 619
allele frequency: 6.056751467710372e-2
allele num: 10220
num of homozygotes: 12

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.39e-1

DP
type: SiteQuality
SIO_000300: 1.671657e6

QD
type: SiteQuality
SIO_000300: 1.533e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.6e0

VQSLOD
type: SiteQuality
SIO_000300: 6.51e0

MQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.26e-2

GenotypeQuality
all individuals: 1162
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38737
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1361
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5310
bin: 9.75e1
variant carriers: 455

GenotypeQuality
all individuals: 5423
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 426
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 787
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.63263226165107e-5
allele num: 64758
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15492
num of homozygotes: 0

Latino
type: Population
allele count: 15
allele frequency: 1.315097317201473e-3
allele num: 11406
num of homozygotes: 0

African
type: Population
allele count: 451
allele frequency: 4.394854804131748e-2
allele num: 10262
num of homozygotes: 11

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.674561e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

FS
type: SiteQuality
SIO_000300: 6.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.68e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.03e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e0

QD
type: SiteQuality
SIO_000300: 1.497e1

VQSLOD
type: SiteQuality
SIO_000300: 4.12e0

GenotypeQuality
all individuals: 1396
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1298
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1558
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41642
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 973
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.232859636000998e-5
allele num: 16044
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529706908156397e-5
allele num: 65372
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.62e-1

FS
type: SiteQuality
SIO_000300: 4.031e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.25e0

QD
type: SiteQuality
SIO_000300: 1.221e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

DP
type: SiteQuality
SIO_000300: 1.698466e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.79e-1

GenotypeQuality
all individuals: 172
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1579
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5759
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1404
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.150061500615006e-5
allele num: 16260
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.745810055865922e-4
allele num: 11456
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65686
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.657e0

QD
type: SiteQuality
SIO_000300: 9.369999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.078e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.47e-1

DP
type: SiteQuality
SIO_000300: 1.710967e6

GenotypeQuality
all individuals: 108
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 976
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 895
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1413
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5804
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4929
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 233
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1583
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.041640052316209e-5
allele num: 65754
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16298
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.68429207824908e-5
allele num: 10326
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.95e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.08e0

QD
type: SiteQuality
SIO_000300: 1.373e1

FS
type: SiteQuality
SIO_000300: 3.199e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQ
type: SiteQuality
SIO_000300: 5.955e1

DP
type: SiteQuality
SIO_000300: 1.71296e6

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

GenotypeQuality
all individuals: 132
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4931
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 203
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42934
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1414
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16344
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518095700752976e-5
allele num: 65872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.011e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.449e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.2e-1

FS
type: SiteQuality
SIO_000300: 8.564e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.3e-3

DP
type: SiteQuality
SIO_000300: 1.716741e6

GenotypeQuality
all individuals: 589
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4931
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1592
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5885
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 986
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512950859356088e-5
allele num: 66096
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

FS
type: SiteQuality
SIO_000300: 6.412e0

DP
type: SiteQuality
SIO_000300: 1.723528e6

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.86e-1

MQ
type: SiteQuality
SIO_000300: 6.017e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

QD
type: SiteQuality
SIO_000300: 1.243e1

GenotypeQuality
all individuals: 1589
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43203
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5873
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 987
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1417
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4932
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 443
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66096
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.161170459823502e-4
allele num: 8612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.75e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.376e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.25e0

VQSLOD
type: SiteQuality
SIO_000300: 3.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.08e-1

DP
type: SiteQuality
SIO_000300: 1.724642e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

GenotypeQuality
all individuals: 95
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43226
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4933
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 171
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 982
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5885
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1415
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1593
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51285930408472e-5
allele num: 66100
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.43e-1

QD
type: SiteQuality
SIO_000300: 1.229e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 6.329e0

MQRankSum
type: SiteQuality
SIO_000300: 3.86e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.620000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.6e-2

DP
type: SiteQuality
SIO_000300: 1.725445e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.43e-1

GenotypeQuality
all individuals: 1422
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43154
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 970
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4940
bin: 9.75e1
variant carriers: 5

South Asian
type: Population
allele count: 4
allele frequency: 2.43427458617332e-4
allele num: 16432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.658103148541626e-5
allele num: 10354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66152
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.726129e6

MQRankSum
type: SiteQuality
SIO_000300: -3.47e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.204e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

VQSLOD
type: SiteQuality
SIO_000300: 8.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.22e-2

QD
type: SiteQuality
SIO_000300: 1.209e1

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1423
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 968
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5924
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1594
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4938
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66168
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.741553465691397e-4
allele num: 11484
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -8.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.62e-1

FS
type: SiteQuality
SIO_000300: 1.623e0

QD
type: SiteQuality
SIO_000300: 1.511e1

DP
type: SiteQuality
SIO_000300: 1.726463e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.57e0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1421
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5926
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4937
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 141
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43145
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1600
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66166
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.08198515995621e-5
allele num: 16442
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.544e0

QD
type: SiteQuality
SIO_000300: 2.006e1

VQSLOD
type: SiteQuality
SIO_000300: -1.441e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

DP
type: SiteQuality
SIO_000300: 1.726633e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e0

GenotypeQuality
all individuals: 578
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5868
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42366
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 967
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4942
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 1587
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511350240304688e-5
allele num: 66166
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.108647450110865e-3
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.041732570872369e-4
allele num: 16438
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.4e-2

QD
type: SiteQuality
SIO_000300: 1.278e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.46e-1

DP
type: SiteQuality
SIO_000300: 1.727336e6

MQ
type: SiteQuality
SIO_000300: 5.685e1

VQSLOD
type: SiteQuality
SIO_000300: 4.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -7.29e-1

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42479
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4935
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1414
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5867
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511441613010489e-5
allele num: 66162
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.22e-1

QD
type: SiteQuality
SIO_000300: 1.13e1

MQRankSum
type: SiteQuality
SIO_000300: 9.63e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -8.93e-2

FS
type: SiteQuality
SIO_000300: 8.746e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.727428e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.5e-1

GenotypeQuality
all individuals: 1308
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 144
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1421
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 266
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 123
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 548
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42134
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 186
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 837
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 6592
bin: 9.75e1
variant carriers: 1809

GenotypeQuality
all individuals: 529
bin: 9.25e1
variant carriers: 6

South Asian
type: Population
allele count: 118
allele frequency: 7.181110029211295e-3
allele num: 16432
num of homozygotes: 4

European (Finnish)
type: Population
allele count: 19
allele frequency: 2.889294403892944e-3
allele num: 6576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 40
allele frequency: 6.044852807834129e-4
allele num: 66172
num of homozygotes: 0

Latino
type: Population
allele count: 701
allele frequency: 6.104144897248345e-2
allele num: 11484
num of homozygotes: 24

East Asian
type: Population
allele count: 1012
allele frequency: 1.174013921113689e-1
allele num: 8620
num of homozygotes: 58

African
type: Population
allele count: 23
allele frequency: 2.22007722007722e-3
allele num: 10360
num of homozygotes: 0

Other
type: Population
allele count: 12
allele frequency: 1.330376940133038e-2
allele num: 902
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.17e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.02e-1

DP
type: SiteQuality
SIO_000300: 1.769198e6

QD
type: SiteQuality
SIO_000300: 1.29e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.94e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.83e-1

GenotypeQuality
all individuals: 102
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 553
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5892
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 874
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43470
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1479
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510574018126888e-5
allele num: 66200
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.3e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.23e-1

QD
type: SiteQuality
SIO_000300: 1.285e1

DP
type: SiteQuality
SIO_000300: 1.73042e6

FS
type: SiteQuality
SIO_000300: 4.3e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1378
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5877
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1478
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43279
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4848
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 136
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.645061728395061e-5
allele num: 10368
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.4e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.64e-1

FS
type: SiteQuality
SIO_000300: 1.894e0

MQ
type: SiteQuality
SIO_000300: 5.919e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.56e-1

QD
type: SiteQuality
SIO_000300: 1.45e1

DP
type: SiteQuality
SIO_000300: 1.73029e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.879999999999999e-1

GenotypeQuality
all individuals: 25
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 869
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1474
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5837
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66198
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.67e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.13e0

QD
type: SiteQuality
SIO_000300: 1.837e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.45e-1

DP
type: SiteQuality
SIO_000300: 1.729844e6

FS
type: SiteQuality
SIO_000300: 1.038e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e0

VQSLOD
type: SiteQuality
SIO_000300: -7.194e-1

GenotypeQuality
all individuals: 1366
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4847
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 207
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5844
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 869
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42951
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.18e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.55e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

QD
type: SiteQuality
SIO_000300: 1.534e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.729843e6

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1465
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43247
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 866
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1364
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5821
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.042296072507553e-5
allele num: 66200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

DP
type: SiteQuality
SIO_000300: 1.730468e6

MQ
type: SiteQuality
SIO_000300: 5.975e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.03e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

QD
type: SiteQuality
SIO_000300: 1.304e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

GenotypeQuality
all individuals: 4846
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 332
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43047
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5781
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1360
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 873
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1460
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.721437292865864e-5
allele num: 11466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66178
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.729506e6

MQ
type: SiteQuality
SIO_000300: 5.884e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.8e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.69e-1

QD
type: SiteQuality
SIO_000300: 1.087e1

FS
type: SiteQuality
SIO_000300: 4.32e0

VQSLOD
type: SiteQuality
SIO_000300: -5.385e-1

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1459
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5771
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4846
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 702
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1356
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511304558094547e-5
allele num: 66168
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.421e0

DP
type: SiteQuality
SIO_000300: 1.72958e6

VQSLOD
type: SiteQuality
SIO_000300: -2.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e0

MQ
type: SiteQuality
SIO_000300: 5.799e1

FS
type: SiteQuality
SIO_000300: 2.531e0

QD
type: SiteQuality
SIO_000300: 8.31e0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.3e-1

GenotypeQuality
all individuals: 151
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 813
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1352
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43082
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 863
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1459
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 184
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4862
bin: 9.75e1
variant carriers: 21

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66102
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 22
allele frequency: 2.1256038647343e-3
allele num: 10350
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.6e-2

DP
type: SiteQuality
SIO_000300: 1.728127e6

QD
type: SiteQuality
SIO_000300: 1.478e1

VQSLOD
type: SiteQuality
SIO_000300: 2.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.12e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.7e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

FS
type: SiteQuality
SIO_000300: 1.743e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.16e-1

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1344
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1455
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 916
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42905
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4845
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5713
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 858
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.665571235260003e-5
allele num: 10346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66056
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 7.344e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.61e-1

QD
type: SiteQuality
SIO_000300: 1.623e1

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e0

MQRankSum
type: SiteQuality
SIO_000300: -2.181e0

DP
type: SiteQuality
SIO_000300: 1.725776e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

MQ
type: SiteQuality
SIO_000300: 5.634e1

GenotypeQuality
all individuals: 207
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1311
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1113
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43162
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1406
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5650
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4849
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 853
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.161710037174721e-4
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.116956202593589e-5
allele num: 16348
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.069250144144691e-5
allele num: 65906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.65e-1

QD
type: SiteQuality
SIO_000300: 1.35e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

FS
type: SiteQuality
SIO_000300: 4.177e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.258e0

DP
type: SiteQuality
SIO_000300: 1.722605e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1838
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5488
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42407
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4847
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 277
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1359
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 847
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.097560975609756e-4
allele num: 6560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526158354190831e-5
allele num: 65524
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.169e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQ
type: SiteQuality
SIO_000300: 5.94e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.07e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.58e-1

DP
type: SiteQuality
SIO_000300: 1.70956e6

VQSLOD
type: SiteQuality
SIO_000300: 8.179999999999999e-1

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5331
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1216
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 833
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41431
bin: 6.25e1
variant carriers: 1

East Asian
type: Population
allele count: 7
allele frequency: 8.185219831618335e-4
allele num: 8552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11342
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16164
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65218
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.529e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.16e-1

FS
type: SiteQuality
SIO_000300: 9.635e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

QD
type: SiteQuality
SIO_000300: 8.65e0

VQSLOD
type: SiteQuality
SIO_000300: -8.735000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

DP
type: SiteQuality
SIO_000300: 1.69662e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.77e-1

GenotypeQuality
all individuals: 240
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41306
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5300
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1204
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11342
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.238236750866766e-4
allele num: 16152
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.155e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 9.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.399e0

VQSLOD
type: SiteQuality
SIO_000300: 3.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

DP
type: SiteQuality
SIO_000300: 1.694723e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e0

GenotypeQuality
all individuals: 4995
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37952
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4325
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 803
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1239
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1358
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.549474728067185e-5
allele num: 64538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10218
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15978
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.492e1

VQSLOD
type: SiteQuality
SIO_000300: 7.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

FS
type: SiteQuality
SIO_000300: 1.773e0

DP
type: SiteQuality
SIO_000300: 1.653516e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 407
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6111
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1194
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4840
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4685
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2670
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1080
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11230
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.560013728120808e-5
allele num: 64102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15844
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.088e0

DP
type: SiteQuality
SIO_000300: 1.597522e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.905e0

VQSLOD
type: SiteQuality
SIO_000300: 1.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.84e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.004e0

QD
type: SiteQuality
SIO_000300: 9.85e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeQuality
all individuals: 518
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2204
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1184
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6321
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1069
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4655
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10184
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11216
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15828
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.561475281846288e-5
allele num: 64042
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.01e-1

MQ
type: SiteQuality
SIO_000300: 5.909e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.957e1

VQSLOD
type: SiteQuality
SIO_000300: -1.019e0

DP
type: SiteQuality
SIO_000300: 1.589834e6

MQRankSum
type: SiteQuality
SIO_000300: 6.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.85e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.63e-1

GenotypeQuality
all individuals: 142
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1938
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3291
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1181
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1061
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6616
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4840
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63992
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.138952164009112e-3
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10182
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11214
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8438
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15816
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.855e0

FS
type: SiteQuality
SIO_000300: 2.235e0

MQRankSum
type: SiteQuality
SIO_000300: -4.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.09e-1

QD
type: SiteQuality
SIO_000300: 1.143e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.53e-1

DP
type: SiteQuality
SIO_000300: 1.574967e6

VQSLOD
type: SiteQuality
SIO_000300: 8.35e-1

GenotypeQuality
all individuals: 5481
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3808
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 952
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1103
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3390
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4839
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 374
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24441
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7850
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15692
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11174
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10144
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.18962645729241e-4
allele num: 8406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.923e1

DP
type: SiteQuality
SIO_000300: 1.500793e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.52e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

QD
type: SiteQuality
SIO_000300: 1.662e1

VQSLOD
type: SiteQuality
SIO_000300: -1.641e0

MQRankSum
type: SiteQuality
SIO_000300: 6.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.842e0

GenotypeQuality
all individuals: 140
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3283
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1533
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 656
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7659
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2438
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7757
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1046
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4837
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 738
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6436
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.972078181092939e-5
allele num: 10028
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10986
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.13e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.489e1

DP
type: SiteQuality
SIO_000300: 1.405338e6

FS
type: SiteQuality
SIO_000300: 3.617e0

MQRankSum
type: SiteQuality
SIO_000300: 1.15e0

VQSLOD
type: SiteQuality
SIO_000300: 5.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

GenotypeQuality
all individuals: 5125
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 504
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1727
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2455
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3470
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7604
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1058
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14945
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2942
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1227
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1347
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.773489873372823e-5
allele num: 56386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7676
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9048
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.257e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.52e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

VQSLOD
type: SiteQuality
SIO_000300: 2.58e-1

DP
type: SiteQuality
SIO_000300: 1.296625e6

GenotypeQuality
all individuals: 759
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16918
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 831
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5128
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7771
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5055
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1346
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3566
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2276
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1740
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6318
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.104728236853734e-4
allele num: 9052
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7682
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.56e0

DP
type: SiteQuality
SIO_000300: 1.312903e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.64e0

QD
type: SiteQuality
SIO_000300: 1.614e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -9.262e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.603e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

GenotypeQuality
all individuals: 1367
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1759
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1245
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3228
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1768
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7886
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4551
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5132
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 355
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18691
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.46790380609733e-5
allele num: 10562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9064
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7696
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56584
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.159e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.47e-1

DP
type: SiteQuality
SIO_000300: 1.329727e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.62e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.45e-1

GenotypeQuality
all individuals: 5569
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18691
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1788
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1759
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3665
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1367
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7886
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3228
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1245
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9064
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7696
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.76728403789057e-5
allele num: 56584
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

QD
type: SiteQuality
SIO_000300: 1.159e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.36e-1

DP
type: SiteQuality
SIO_000300: 1.329727e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.47e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.62e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 4377
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29822
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1542
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1954
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2731
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5142
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1560
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1949
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6789
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10840
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7970
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13074
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9234
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.700969552645008e-5
allele num: 58790
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.67e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.067e0

QD
type: SiteQuality
SIO_000300: 5.89e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.067e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

DP
type: SiteQuality
SIO_000300: 1.445337e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.956e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 2259
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1967
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1655
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5145
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 31475
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 804
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4462
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.362022592791823e-5
allele num: 59488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9276
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8036
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.507159005275056e-4
allele num: 13270
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.31e-1

DP
type: SiteQuality
SIO_000300: 1.465014e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.351e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -9.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

FS
type: SiteQuality
SIO_000300: 8.837e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.37e-1

GenotypeQuality
all individuals: 48
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1658
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 943
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1394
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4510
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5149
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 582
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2061
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35830
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14178
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61704
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.804077214504781e-4
allele num: 11086
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

QD
type: SiteQuality
SIO_000300: 1.247e1

DP
type: SiteQuality
SIO_000300: 1.527632e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.12e-1

FS
type: SiteQuality
SIO_000300: 5.669e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.53e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 657
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1707
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5149
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 102
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1456
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 833
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2131
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2935
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.618133686300464e-5
allele num: 15110
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11236
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8422
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63566
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.423e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

DP
type: SiteQuality
SIO_000300: 1.569043e6

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

MQRankSum
type: SiteQuality
SIO_000300: 8.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.47e-1

GenotypeQuality
all individuals: 93
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5269
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1768
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1347
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1492
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5177
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 41081
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 849
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2204
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9820
num of homozygotes: 0

East Asian
type: Population
allele count: 14
allele frequency: 1.635514018691589e-3
allele num: 8560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65356
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.253604111821487e-4
allele num: 15954
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

QD
type: SiteQuality
SIO_000300: 1.348e1

MQRankSum
type: SiteQuality
SIO_000300: -4.612e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e-2

MQ
type: SiteQuality
SIO_000300: 5.144e1

VQSLOD
type: SiteQuality
SIO_000300: -1.132e0

DP
type: SiteQuality
SIO_000300: 1.60572e6

FS
type: SiteQuality
SIO_000300: 1.7464e1

GenotypeQuality
all individuals: 667
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1107
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 849
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2214
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5304
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5175
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 41391
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1495
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1769
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11388
num of homozygotes: 0

East Asian
type: Population
allele count: 14
allele frequency: 1.632843480289247e-3
allele num: 8574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65614
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.24331717021012e-4
allele num: 16086
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.55e-1

FS
type: SiteQuality
SIO_000300: 1.321e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

QD
type: SiteQuality
SIO_000300: 1.99e0

MQ
type: SiteQuality
SIO_000300: 5.196e1

DP
type: SiteQuality
SIO_000300: 1.611387e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.06e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.119e0

VQSLOD
type: SiteQuality
SIO_000300: -2.371e0

GenotypeQuality
all individuals: 1824
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5431
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2254
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 864
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5174
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 42401
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1546
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.082725060827251e-5
allele num: 16440
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.318034306907742e-4
allele num: 8628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.629963e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -7.95e-1

FS
type: SiteQuality
SIO_000300: 4.187e0

QD
type: SiteQuality
SIO_000300: 1.085e1

GenotypeQuality
all individuals: 2255
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1547
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 869
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5175
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 28
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1826
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42447
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504890895410083e-5
allele num: 66450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.959e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.63e-1

QD
type: SiteQuality
SIO_000300: 1.403e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.39e0

FS
type: SiteQuality
SIO_000300: 1.647e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

MQRankSum
type: SiteQuality
SIO_000300: -1.027e0

DP
type: SiteQuality
SIO_000300: 1.630787e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.246e0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5180
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2267
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42604
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1556
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1839
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.00048007681229e-5
allele num: 66656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

FS
type: SiteQuality
SIO_000300: 1.6529e1

VQSLOD
type: SiteQuality
SIO_000300: -2.156e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.51e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.72e-1

DP
type: SiteQuality
SIO_000300: 1.636159e6

QD
type: SiteQuality
SIO_000300: 1.171e1

GenotypeQuality
all individuals: 1556
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2268
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42594
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5183
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5479
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1838
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.734906315058987e-4
allele num: 11528
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.929012345679012e-4
allele num: 10368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500195025353296e-5
allele num: 66658
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.636518e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.09e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 9.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.0e-2

FS
type: SiteQuality
SIO_000300: 1.767e0

QD
type: SiteQuality
SIO_000300: 1.202e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

GenotypeQuality
all individuals: 5182
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1558
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42581
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1842
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5479
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2270
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 870
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.578e1

FS
type: SiteQuality
SIO_000300: 5.391e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.09e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.167e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.25e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.49e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.05e0

DP
type: SiteQuality
SIO_000300: 1.637286e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e0

GenotypeQuality
all individuals: 88
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42569
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5188
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 871
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1557
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5476
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1842
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2271
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.049853020577119e-4
allele num: 66676
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

MQRankSum
type: SiteQuality
SIO_000300: -1.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.08e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.14e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.638019e6

MQ
type: SiteQuality
SIO_000300: 5.926e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

QD
type: SiteQuality
SIO_000300: 1.459e1

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5480
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1560
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 871
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5187
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2271
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1843
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42575
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.741e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.739e0

QD
type: SiteQuality
SIO_000300: 1.626e1

FS
type: SiteQuality
SIO_000300: 1.625e0

DP
type: SiteQuality
SIO_000300: 1.63766e6

VQSLOD
type: SiteQuality
SIO_000300: -2.062e0

MQRankSum
type: SiteQuality
SIO_000300: -1.044e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQ
type: SiteQuality
SIO_000300: 5.485e1

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2245
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1537
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1815
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42405
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5431
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5528
bin: 9.75e1
variant carriers: 411

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 8.997660608241857e-5
allele num: 66684
num of homozygotes: 0

Latino
type: Population
allele count: 18
allele frequency: 1.560874089490114e-3
allele num: 11532
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 396
allele frequency: 3.809890321339234e-2
allele num: 10394
num of homozygotes: 9

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.179e1

DP
type: SiteQuality
SIO_000300: 1.665173e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.24e-2

QD
type: SiteQuality
SIO_000300: 9.83e0

MQRankSum
type: SiteQuality
SIO_000300: -5.722e0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5315
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1538
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42410
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2247
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 864
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1817
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10042
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.498950146979423e-5
allele num: 66676
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.240000000000001e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.15e-1

QD
type: SiteQuality
SIO_000300: 1.325e1

DP
type: SiteQuality
SIO_000300: 1.647425e6

MQ
type: SiteQuality
SIO_000300: 6.042e1

VQSLOD
type: SiteQuality
SIO_000300: 4.61e0

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.090000000000001e-1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5798
bin: 9.75e1
variant carriers: 774

GenotypeQuality
all individuals: 1498
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 24
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41955
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1777
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2193
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5358
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 22
allele frequency: 2.287853577371048e-3
allele num: 9616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 621
allele frequency: 9.315931593159316e-3
allele num: 66660
num of homozygotes: 6

Other
type: Population
allele count: 6
allele frequency: 6.607929515418502e-3
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 15
allele frequency: 1.304801670146138e-3
allele num: 11496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 19
allele frequency: 2.876173175900696e-3
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 103
allele frequency: 6.242424242424242e-3
allele num: 16500
num of homozygotes: 3

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.599999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

QD
type: SiteQuality
SIO_000300: 1.317e1

DP
type: SiteQuality
SIO_000300: 1.676965e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.842e0

MQ
type: SiteQuality
SIO_000300: 5.99e1

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 883
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5511
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2254
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1815
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5341
bin: 9.75e1
variant carriers: 49

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66676
num of homozygotes: 0

African
type: Population
allele count: 39
allele frequency: 3.763025858741799e-3
allele num: 10364
num of homozygotes: 1

South Asian
type: Population
allele count: 5
allele frequency: 3.029568589432865e-4
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.202913631633715e-4
allele num: 11532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-1

DP
type: SiteQuality
SIO_000300: 1.653001e6

FS
type: SiteQuality
SIO_000300: 5.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.26e-1

QD
type: SiteQuality
SIO_000300: 1.504e1

VQSLOD
type: SiteQuality
SIO_000300: 3.84e0

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.74e-2

MQ
type: SiteQuality
SIO_000300: 5.976e1

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1568
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1818
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 887
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42423
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5530
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2259
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 14
allele frequency: 1.347449470644851e-3
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.529e0

VQSLOD
type: SiteQuality
SIO_000300: 2.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.92e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

QD
type: SiteQuality
SIO_000300: 1.304e1

DP
type: SiteQuality
SIO_000300: 1.649135e6

FS
type: SiteQuality
SIO_000300: 1.745e0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 888
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5545
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1568
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1821
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2256
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5301
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.648102e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.247e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

MQ
type: SiteQuality
SIO_000300: 5.937e1

VQSLOD
type: SiteQuality
SIO_000300: 8.74e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.452e1

FS
type: SiteQuality
SIO_000300: 2.651e0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42468
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5548
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5301
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1821
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1568
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 888
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.626492106276473e-5
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66692
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.342e0

VQSLOD
type: SiteQuality
SIO_000300: 5.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.07e-1

DP
type: SiteQuality
SIO_000300: 1.648058e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.77e0

QD
type: SiteQuality
SIO_000300: 1.259e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.47e-1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1822
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2255
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5549
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5301
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1568
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42477
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66692
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.09e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

DP
type: SiteQuality
SIO_000300: 1.648308e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

VQSLOD
type: SiteQuality
SIO_000300: -5.607e-1

QD
type: SiteQuality
SIO_000300: 1.342e1

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5549
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 887
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42477
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1568
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5301
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1822
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499430216517723e-5
allele num: 66692
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

QD
type: SiteQuality
SIO_000300: 1.342e1

MQRankSum
type: SiteQuality
SIO_000300: 2.09e0

VQSLOD
type: SiteQuality
SIO_000300: -5.607e-1

DP
type: SiteQuality
SIO_000300: 1.648308e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.99e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 887
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2255
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5551
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5300
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1567
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42481
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66692
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.648085e6

MQRankSum
type: SiteQuality
SIO_000300: -1.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.581e0

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

QD
type: SiteQuality
SIO_000300: 1.287e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.586e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5554
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1571
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1824
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 887
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2256
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66686
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.647943e6

MQRankSum
type: SiteQuality
SIO_000300: 9.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e0

QD
type: SiteQuality
SIO_000300: 1.406e1

FS
type: SiteQuality
SIO_000300: 5.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -5.678e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.94e0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 887
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2254
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5526
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1566
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1818
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5304
bin: 9.75e1
variant carriers: 5

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.78168362627197e-4
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.49e-1

DP
type: SiteQuality
SIO_000300: 1.645942e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.0e-2

FS
type: SiteQuality
SIO_000300: 2.133e0

QD
type: SiteQuality
SIO_000300: 1.208e1

VQSLOD
type: SiteQuality
SIO_000300: 9.61e-1