3-127294020-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294020
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294020
    reference: chr 3
allele count: 2
allele frequency: 1.730882403849482e-5
allele num: 115548
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.*73+8T>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.690+8T>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.854+8T>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.854+8T>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.370T>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.*73+8T>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.854+8T>C
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5213
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26087
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22787
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44586
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1052
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 9.75e1
  variant carriers: 2
hgvs: c.854+8T>C
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum

3-127294024-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294024
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294024
    reference: chr 3
allele count: 1
allele frequency: 8.609556607834696e-6
allele num: 116150
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.854+4A>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.*73+4A>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.690+4A>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.366A>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.854+4A>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.854+4A>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.*73+4A>T
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26551
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 45276
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1432
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6671
  bin: 6.75e1
  variant carriers: 0
hgvs: c.854+4A>T
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

3-127294025-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294025
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294025
    reference: chr 3
allele count: 1
allele frequency: 8.598008701184805e-6
allele num: 116306
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.*73+3G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.*73+3G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.854+3G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.854+3G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.690+3G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.854+3G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.365G>A
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23055
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26677
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6662
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2619
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
hgvs: c.854+3G>A
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

3-127294035-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294035
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294035
    reference: chr 3
allele count: 3
allele frequency: 2.550196365120114e-5
allele num: 117638
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.847T>A
  hgvsp: ENSP00000413428.2:p.Phe283Ile
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.847T>A
  hgvsp: ENSP00000347748.3:p.Phe283Ile
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.847T>A
  hgvsp: ENSP00000418298.1:p.Phe283Ile
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.355T>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.683T>A
  hgvsp: ENSP00000296210.7:p.Leu228His
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.*66T>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.*66T>A
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5257
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27623
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6765
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1446
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Phe283Ile
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

3-127294039-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294039
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294039
    reference: chr 3
allele count: 1
allele frequency: 8.481620328747603e-6
allele num: 117902
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.*62G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.843G>A
  hgvsp: ENST00000355552.3:c.843G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.351G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.843G>A
  hgvsp: ENST00000450633.2:c.843G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.679G>A
  hgvsp: ENSP00000296210.7:p.Gly227Arg
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.*62G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.843G>A
  hgvsp: ENST00000489960.1:c.843G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23643
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6770
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1448
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly227Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

3-127294041-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294041
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294041
    reference: chr 3
allele count: 183
allele frequency: 1.550216860937923e-3
allele num: 118048
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.677C>T
  hgvsp: ENSP00000296210.7:p.Pro226Leu
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.841C>T
  hgvsp: ENSP00000418298.1:p.Arg281Trp
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.841C>T
  hgvsp: ENSP00000413428.2:p.Arg281Trp
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.*60C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.841C>T
  hgvsp: ENSP00000347748.3:p.Arg281Trp
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.*60C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.349C>T
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5303
  bin: 3.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 23732
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 3.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 27594
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1667
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6744
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 7.5e0
  variant carriers: 1
hgvs: p.Arg281Trp
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum

3-127294052-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294052
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294052
    reference: chr 3
allele count: 1
allele frequency: 8.437679300685139e-6
allele num: 118516
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.830T>A
  hgvsp: ENSP00000418298.1:p.Val277Glu
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.338T>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.*49T>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.666T>A
  hgvsp: ENST00000296210.7:c.666T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.830T>A
  hgvsp: ENSP00000347748.3:p.Val277Glu
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.830T>A
  hgvsp: ENSP00000413428.2:p.Val277Glu
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.*49T>A
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27770
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24076
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47700
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1466
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1432
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val277Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

3-127294060-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294060
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294060
    reference: chr 3
allele count: 1
allele frequency: 8.441240524707511e-6
allele num: 118466
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.822C>T
  hgvsp: ENST00000450633.2:c.822C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.822C>T
  hgvsp: ENST00000355552.3:c.822C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.*41C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.658C>T
  hgvsp: ENSP00000296210.7:p.His220Tyr
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.*41C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.330C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.822C>T
  hgvsp: ENST00000489960.1:c.822C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5312
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24153
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6767
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
hgvs: p.His220Tyr
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

3-127294062-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294062
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294062
    reference: chr 3
allele count: 1
allele frequency: 8.445660619573662e-6
allele num: 118404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.328C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.820C>T
  hgvsp: ENSP00000347748.3:p.Leu274Phe
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.*39C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.*39C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.656C>T
  hgvsp: ENSP00000296210.7:p.Ala219Val
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.820C>T
  hgvsp: ENSP00000413428.2:p.Leu274Phe
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.820C>T
  hgvsp: ENSP00000418298.1:p.Leu274Phe
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24179
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5286
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6761
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1704
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47282
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu274Phe
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

3-127294063-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294063
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294063
    reference: chr 3
allele count: 1
allele frequency: 8.446231291597689e-6
allele num: 118396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.*38G>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.819G>C
  hgvsp: ENST00000355552.3:c.819G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.*38G>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.655G>C
  hgvsp: ENSP00000296210.7:p.Ala219Pro
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.327G>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.819G>C
  hgvsp: ENST00000489960.1:c.819G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.819G>C
  hgvsp: ENST00000450633.2:c.819G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27358
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24198
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5317
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala219Pro
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

3-127294064-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294064
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294064
    reference: chr 3
allele count: 1
allele frequency: 8.450085345861994e-6
allele num: 118342
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.326C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.818C>T
  hgvsp: ENSP00000347748.3:p.Pro273Leu
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.*37C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.*37C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.818C>T
  hgvsp: ENSP00000413428.2:p.Pro273Leu
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.818C>T
  hgvsp: ENSP00000418298.1:p.Pro273Leu
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.654C>T
  hgvsp: ENST00000296210.7:c.654C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24187
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27313
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47272
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Pro273Leu
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD

3-127294072-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294072
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294072
    reference: chr 3
allele count: 1
allele frequency: 8.483059330516958e-6
allele num: 117882
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.810C>T
  hgvsp: ENST00000489960.1:c.810C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.646C>T
  hgvsp: ENSP00000296210.7:p.Leu216Phe
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.810C>T
  hgvsp: ENST00000450633.2:c.810C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.*29C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.810C>T
  hgvsp: ENST00000355552.3:c.810C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.*29C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.318C>T
  variant of: http://identifiers.org/hgnc/30413
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26722
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5258
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24233
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1380
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46897
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu216Phe
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

3-127294074-AGCTGAAGTACAGGAAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294074
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294058
    reference: chr 3
allele count: 1
allele frequency: 8.496754239880366e-6
allele num: 117692
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsp: ENSP00000418298.1:p.Phe265SerfsTer?
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsp: ENSP00000296210.7:p.Leu210PhefsTer105
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsp: ENSP00000347748.3:p.Phe265SerfsTer238
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsp: ENSP00000413428.2:p.Phe265SerfsTer238
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24143
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26541
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6611
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2459
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46653
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Phe265SerfsTer238
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: AGCTGAAGTACAGGAAG
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ

3-127294076-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294076
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294076
    reference: chr 3
allele count: 1
allele frequency: 8.520064752492119e-6
allele num: 117370
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.642G>C
  hgvsp: ENSP00000296210.7:p.Gln214His
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.806G>C
  hgvsp: ENSP00000418298.1:p.Ser269Thr
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.314G>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.*25G>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.*25G>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.806G>C
  hgvsp: ENSP00000413428.2:p.Ser269Thr
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.806G>C
  hgvsp: ENSP00000347748.3:p.Ser269Thr
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26208
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24077
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5268
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1366
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2725
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser269Thr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/3-127294084-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294084
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294084
    reference: chr 3
allele count: 1
allele frequency: 8.621432882145012e-6
allele num: 115990
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.798G>T
  hgvsp: ENST00000489960.1:c.798G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.634G>T
  hgvsp: ENSP00000296210.7:p.Val212Leu
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.798G>T
  hgvsp: ENST00000450633.2:c.798G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.*17G>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.798G>T
  hgvsp: ENST00000355552.3:c.798G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.306G>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.*17G>T
  variant of: http://identifiers.org/hgnc/30413
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5195
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23604
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4108
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6342
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val212Leu
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

3-127294085-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294085
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294084
    reference: chr 3
allele count: 1
allele frequency: 8.637667138859137e-6
allele num: 115772
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.796delC
  hgvsp: ENSP00000347748.3:p.Leu266CysfsTer242
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.*15delC
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.796delC
  hgvsp: ENSP00000418298.1:p.Leu266CysfsTer?
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.796delC
  hgvsp: ENSP00000413428.2:p.Leu266CysfsTer242
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.632delC
  hgvsp: ENSP00000296210.7:p.Pro211LeufsTer109
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.*15delC
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.304delC
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23507
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24632
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6347
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1326
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4331
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu266CysfsTer242
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: AG
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

3-127294091-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294091
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294091
    reference: chr 3
allele count: 1
allele frequency: 8.743092956564315e-6
allele num: 114376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.299C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.791C>T
  hgvsp: ENSP00000413428.2:p.Thr264Ile
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.*10C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.791C>T
  hgvsp: ENSP00000347748.3:p.Thr264Ile
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.791C>T
  hgvsp: ENSP00000418298.1:p.Thr264Ile
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.*10C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.627C>T
  hgvsp: ENST00000296210.7:c.627C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5076
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22904
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23433
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3274
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5699
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6110
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Thr264Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ

3-127294092-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294092
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294092
    reference: chr 3
allele count: 3
allele frequency: 2.636759949374209e-5
allele num: 113776
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.298A>G
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.790A>G
  hgvsp: ENSP00000347748.3:p.Thr264Ala
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.*9A>G
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.*9A>G
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.790A>G
  hgvsp: ENSP00000418298.1:p.Thr264Ala
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.626A>G
  hgvsp: ENSP00000296210.7:p.Asn209Ser
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.790A>G
  hgvsp: ENSP00000413428.2:p.Thr264Ala
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22889
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5062
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3784
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6066
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41239
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6306
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr264Ala
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

3-127294093-TGTGG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294093
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294089
    reference: chr 3
allele count: 1
allele frequency: 8.788427398801258e-6
allele num: 113786
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.*4_*7delCCAC
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.621_624delCCAC
  hgvsp: ENSP00000296210.7:p.Cys207Ter
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.*4_*7delCCAC
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.785_788delCCAC
  hgvsp: ENSP00000347748.3:p.Ala262GlufsTer245
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.785_788delCCAC
  hgvsp: ENSP00000413428.2:p.Ala262GlufsTer245
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.293_296delCCAC
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.785_788delCCAC
  hgvsp: ENSP00000418298.1:p.Ala262GlufsTer?
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3783
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22641
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22942
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6067
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6336
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala262GlufsTer245
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
reference allele: TGTGG
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

3-127294100-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294100
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294100
    reference: chr 3
allele count: 1
allele frequency: 9.085953116481918e-6
allele num: 110060
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.618A>C
  hgvsp: ENSP00000296210.7:p.Arg206Ser
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.782A>C
  hgvsp: ENSP00000413428.2:p.Asp261Ala
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.782A>C
  hgvsp: ENSP00000418298.1:p.Asp261Ala
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.782A>C
  hgvsp: ENSP00000347748.3:p.Asp261Ala
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.290A>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.*1A>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.*1A>C
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6035
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19620
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21376
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5331
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4925
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36626
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5751
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9827
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp261Ala
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

3-127294115-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294115
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294115
    reference: chr 3
allele count: 1
allele frequency: 1.004338743371364e-5
allele num: 99568
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.713-7T>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-7T>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-7T>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.774-7T>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.774-7T>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.282-7T>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.774-7T>C
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2863
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10036
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17073
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11588
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1985
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2145
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18629
  bin: 2.25e1
  variant carriers: 0
hgvs: c.774-7T>C
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ

3-127294122-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294122
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294122
    reference: chr 3
allele count: 1
allele frequency: 1.117718066794832e-5
allele num: 89468
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-14C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.282-14C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.774-14C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.713-14C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-14C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.774-14C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.774-14C>T
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13982
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3681
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15776
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2879
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24677
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2657
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1613
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1461
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP

3-127294127-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294127
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294127
    reference: chr 3
allele count: 4
allele frequency: 4.55736584254301e-5
allele num: 87770
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.713-19T>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.774-19T>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.774-19T>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-19T>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-19T>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.282-19T>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.774-19T>C
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3399
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8950
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14889
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11668
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2678
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16213
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18416
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2631
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

3-127294131-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294131
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294131
    reference: chr 3
allele count: 1
allele frequency: 1.19161105815062e-5
allele num: 83920
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-23G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.774-23G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.713-23G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.282-23G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-23G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.774-23G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.774-23G>A
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8212
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10279
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2268
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2435
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27445
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS

3-127294135-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294135
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294135
    reference: chr 3
allele count: 8
allele frequency: 1.008623732916436e-4
allele num: 79316
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-27C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.282-27C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.774-27C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.774-27C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.713-27C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-27C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.774-27C>T
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7082
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17599
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2781
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17894
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8700
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3077
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2881
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

3-127294135-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294135
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294135
    reference: chr 3
allele count: 1
allele frequency: 1.260779666145544e-5
allele num: 79316
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.774-27C>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.774-27C>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.713-27C>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-27C>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-27C>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.774-27C>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.282-27C>A
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17599
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7082
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2781
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8700
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17894
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1383
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2881
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28649
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum

3-127294137-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294137
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294137
    reference: chr 3
allele count: 1
allele frequency: 1.285380086891694e-5
allele num: 77798
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.713-29G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.282-29G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.774-29G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.774-29G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-29G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-29G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.774-29G>A
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18086
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3013
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6879
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17994
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3327
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8243
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3320
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3364
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28969
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ

3-127294143-GCCCCATGCTGACTCCACACCTCC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294143
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294120
    reference: chr 3
allele count: 1
allele frequency: 1.392912859371518e-5
allele num: 71792
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3236
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19686
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1120
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3053
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4560
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28984
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1813
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1779
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: GCCCCATGCTGACTCCACACCTCC
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD

3-127294148-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294148
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294148
    reference: chr 3
allele count: 1
allele frequency: 1.445755262549156e-5
allele num: 69168
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-40T>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.774-40T>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-40T>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.774-40T>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.713-40T>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.282-40T>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.774-40T>C
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4724
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2953
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20579
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17875
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2987
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29796
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1664
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10049
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1490
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

3-127294151-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294151
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294151
    reference: chr 3
allele count: 3
allele frequency: 4.522840343735866e-5
allele num: 66330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.282-43G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.713-43G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-43G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.774-43G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.774-43G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.774-43G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-43G>A
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21160
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5257
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17679
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5681
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5739
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1449
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9268
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2933
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1576
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD

3-127294158-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294158
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294158
    reference: chr 3
allele count: 1
allele frequency: 1.636446946389998e-5
allele num: 61108
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.774-50G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.282-50G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.713-50G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.774-50G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.774-50G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-50G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-50G>A
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22361
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16871
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6653
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2952
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1294
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28241
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2591
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum

3-127294159-ACACCTCC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294159
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294152
    reference: chr 3
allele count: 171
allele frequency: 2.79557938791525e-3
allele num: 61168
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-58_671-52delGGAGGTG
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.774-58_774-52delGGAGGTG
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-58_610-52delGGAGGTG
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.282-58_282-52delGGAGGTG
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.774-58_774-52delGGAGGTG
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.774-58_774-52delGGAGGTG
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.713-58_713-52delGGAGGTG
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6692
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 1.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16841
  bin: 1.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 22449
  bin: 7.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4404
  bin: 2.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4774
  bin: 2.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2028
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3519
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28572
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7234
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 3
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: ACACCTCC
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-127294160-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294160
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294160
    reference: chr 3
allele count: 2
allele frequency: 3.293156820127774e-5
allele num: 60732
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.282-52G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.774-52G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.774-52G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-52G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-52G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.713-52G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.774-52G>A
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2781
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16748
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22509
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6715
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4740
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2107
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3476
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1219
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28928
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1315
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2926
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1980
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD

3-127294163-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294163
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294163
    reference: chr 3
allele count: 1
allele frequency: 1.72824997407625e-5
allele num: 57862
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-55G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.282-55G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.774-55G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.713-55G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-55G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.774-55G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.774-55G>A
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16185
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2829
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7491
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4021
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23043
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4377
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1213
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8010
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2843
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3421
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2939
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27813
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

3-127294165-CCCCATGCCCCCAGCGGGTGGACACCCTGCCGCCCACTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294165
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294127
    reference: chr 3
allele count: 1
allele frequency: 1.821958240717123e-5
allele num: 54886
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 3768
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23454
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15668
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3372
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2667
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2973
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6046
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25980
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8631
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: CCCCATGCCCCCAGCGGGTGGACACCCTGCCGCCCACTT
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP

3-127294168-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294168
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294168
    reference: chr 3
allele count: 2
allele frequency: 3.63411709125268e-5
allele num: 55034
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.774-60G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.774-60G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-60G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.282-60G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.713-60G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-60G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.774-60G>A
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8231
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15505
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3888
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23840
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
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genotype depth: GenotypeDepth
  all individuals: 50
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genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
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genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1199
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3301
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27745
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
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genotype quality: GenotypeQuality
  all individuals: 2832
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genotype quality: GenotypeQuality
  all individuals: 223
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2831
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2567
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

3-127294171-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294171
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294171
    reference: chr 3
allele count: 1
allele frequency: 1.915562025898398e-5
allele num: 52204
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.282-63C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.774-63C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.774-63C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.774-63C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.713-63C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-63C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-63C>T
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24316
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14928
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8891
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3727
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3645
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 356
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 261
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3925
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3313
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-127294178-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294178
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294178
    reference: chr 3
allele count: 1
allele frequency: 2.027492802400551e-5
allele num: 49322
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.712+68C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.281+68C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.773+68C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-70C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-70C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.773+68C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.773+68C>T
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9580
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13994
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2849
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3438
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10080
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3292
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/3-127294179-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294179
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294179
    reference: chr 3
allele count: 1
allele frequency: 2.076756936368168e-5
allele num: 48152
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.281+67G>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.773+67G>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.773+67G>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-71G>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.773+67G>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-71G>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.712+67G>T
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9745
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25445
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13840
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3619
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10254
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5189
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3261
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25618
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

3-127294179-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294179
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294179
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 48152
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.281+67G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.712+67G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-71G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.773+67G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.773+67G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.773+67G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-71G>A
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 13840
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25445
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9745
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3619
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3888
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25618
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5189
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1125
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3261
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

3-127294180-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294180
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294180
    reference: chr 3
allele count: 2
allele frequency: 4.151444702756559e-5
allele num: 48176
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-72C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.773+66C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.773+66C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-72C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.281+66C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.712+66C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.773+66C>T
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9773
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25565
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13775
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3668
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3249
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3114
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5527
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1065
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/3-127294189-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294189
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294189
    reference: chr 3
allele count: 1
allele frequency: 2.227766886472999e-5
allele num: 44888
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.712+57G>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-81G>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-81G>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.773+57G>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.773+57G>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.281+57G>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.773+57G>T
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26434
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10623
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12877
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24911
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2844
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3308
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

3-127294189-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294189
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294189
    reference: chr 3
allele count: 9
allele frequency: 2.0049901978257e-4
allele num: 44888
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.281+57G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-81G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.773+57G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-81G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.712+57G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.773+57G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.773+57G>A
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26434
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10623
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12877
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3308
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4343
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

3-127294190-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294190
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294190
    reference: chr 3
allele count: 1
allele frequency: 2.231047253580831e-5
allele num: 44822
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.712+56G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-82G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.773+56G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.773+56G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.281+56G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-82G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.773+56G>A
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26516
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2642
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12861
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10598
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3296
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3516
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1179
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4819
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3665
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10937
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

3-127294195-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294195
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294195
    reference: chr 3
allele count: 1
allele frequency: 2.309468822170901e-5
allele num: 43300
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.773+51G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.773+51G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-87G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-87G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.712+51G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.281+51G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.773+51G>A
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27079
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3313
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10764
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12482
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10968
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25682
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4531
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1110
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

3-127294196-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294196
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294196
    reference: chr 3
allele count: 1
allele frequency: 2.330133283623823e-5
allele num: 42916
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.773+50C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.773+50C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.773+50C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.712+50C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-88C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.281+50C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-88C>T
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10657
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4711
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3204
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3336
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1336
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff

3-127294214-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294214
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294214
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 41330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.281+32G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-106G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.712+32G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.773+32G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.773+32G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-106G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.773+32G>A
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2920
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29261
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9775
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3894
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2962
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3664
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9928
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS

http://identifiers.org/exac.variant/3-127294227-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294227
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294227
    reference: chr 3
allele count: 1
allele frequency: 2.42800951779731e-5
allele num: 41186
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-119G>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.773+19G>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.712+19G>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-119G>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.281+19G>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.773+19G>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.773+19G>T
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3008
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30969
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12146
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2799
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3561
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3425
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3154
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

3-127294233-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294233
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294233
    reference: chr 3
allele count: 2
allele frequency: 4.739111890431733e-5
allele num: 42202
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-125C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.712+13C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.773+13C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.281+13C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-125C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.773+13C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.773+13C>T
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2897
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7015
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31622
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7143
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3429
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2833
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2324
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

3-127294241-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294241
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294241
    reference: chr 3
allele count: 6
allele frequency: 1.351351351351351e-4
allele num: 44400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-133G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.773+5G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.281+5G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-133G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.773+5G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.773+5G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.712+5G>A
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5411
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11952
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32192
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4789
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5538
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1473
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2316
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1594
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3302
  bin: 2.75e1
  variant carriers: 0
hgvs: c.773+5G>A
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD

3-127294242-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294242
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294242
    reference: chr 3
allele count: 5
allele frequency: 1.117518215546913e-4
allele num: 44742
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.773+4C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-134C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-134C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.773+4C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.281+4C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.773+4C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.712+4C>T
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32164
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11903
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2887
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5344
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1516
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
hgvs: c.773+4C>T
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS

3-127294257-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294257
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294257
    reference: chr 3
allele count: 2
allele frequency: 3.948979188879674e-5
allele num: 50646
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.762C>T
  hgvsp: ENST00000355552.3:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.270C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.701C>T
  hgvsp: ENSP00000377056.2:p.Ser234Leu
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-149C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-149C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.762C>T
  hgvsp: ENST00000489960.1:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.762C>T
  hgvsp: ENST00000450633.2:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31349
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3338
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8762
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10775
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9191
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34314
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2838
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser234Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff

3-127294263-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294263
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294263
    reference: chr 3
allele count: 2
allele frequency: 3.752486021989568e-5
allele num: 53298
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.695C>T
  hgvsp: ENSP00000377056.2:p.Thr232Ile
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.756C>T
  hgvsp: ENST00000489960.1:c.756C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.756C>T
  hgvsp: ENST00000450633.2:c.756C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-155C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.756C>T
  hgvsp: ENST00000355552.3:c.756C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.264C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-155C>T
  variant of: http://identifiers.org/hgnc/30413
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10027
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30700
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10935
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2380
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2954
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr232Ile
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

3-127294265-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294265
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294265
    reference: chr 3
allele count: 2
allele frequency: 3.718578015766771e-5
allele num: 53784
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.754G>C
  hgvsp: ENSP00000347748.3:p.Asp252His
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.754G>C
  hgvsp: ENSP00000418298.1:p.Asp252His
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.693G>C
  hgvsp: ENST00000393400.2:c.693G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-157G>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.262G>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.754G>C
  hgvsp: ENSP00000413428.2:p.Asp252His
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-157G>C
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9882
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11326
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30421
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11358
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2323
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp252His
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

3-127294288-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294288
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294288
    reference: chr 3
allele count: 1
allele frequency: 1.65508109897385e-5
allele num: 60420
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-180T>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-180T>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.731T>A
  hgvsp: ENSP00000418298.1:p.Leu244Gln
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.731T>A
  hgvsp: ENSP00000413428.2:p.Leu244Gln
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.239T>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.731T>A
  hgvsp: ENSP00000347748.3:p.Leu244Gln
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.670T>A
  hgvsp: ENSP00000377056.2:p.Trp224Arg
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8617
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28040
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2196
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32307
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1835
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu244Gln
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/3-127294290-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294290
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294290
    reference: chr 3
allele count: 1
allele frequency: 1.652892561983471e-5
allele num: 60500
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.729G>T
  hgvsp: ENST00000489960.1:c.729G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-182G>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.729G>T
  hgvsp: ENST00000450633.2:c.729G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.668G>T
  hgvsp: ENSP00000377056.2:p.Gly223Val
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.237G>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.729G>T
  hgvsp: ENST00000355552.3:c.729G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-182G>T
  variant of: http://identifiers.org/hgnc/30413
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27823
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8613
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32220
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2267
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1789
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly223Val
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

3-127294290-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294290
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294290
    reference: chr 3
allele count: 1
allele frequency: 1.652892561983471e-5
allele num: 60500
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.729G>A
  hgvsp: ENST00000489960.1:c.729G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-182G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.668G>A
  hgvsp: ENSP00000377056.2:p.Gly223Asp
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-182G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.729G>A
  hgvsp: ENST00000355552.3:c.729G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.729G>A
  hgvsp: ENST00000450633.2:c.729G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.237G>A
  variant of: http://identifiers.org/hgnc/30413
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8613
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27823
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1468
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly223Asp
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

3-127294295-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294295
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294295
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 60528
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.724C>T
  hgvsp: ENSP00000413428.2:p.Gln242Ter
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.724C>T
  hgvsp: ENSP00000418298.1:p.Gln242Ter
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.232C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-187C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-187C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.724C>T
  hgvsp: ENSP00000347748.3:p.Gln242Ter
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.663C>T
  hgvsp: ENST00000393400.2:c.663C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: stop gained
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 15012
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27725
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1805
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32685
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15707
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2426
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gln242Ter
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/3-127294296-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294296
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294296
    reference: chr 3
allele count: 2
allele frequency: 3.291097581043278e-5
allele num: 60770
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.231G>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.723G>T
  hgvsp: ENST00000355552.3:c.723G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.662G>T
  hgvsp: ENSP00000377056.2:p.Cys221Phe
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.723G>T
  hgvsp: ENST00000489960.1:c.723G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-188G>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.723G>T
  hgvsp: ENST00000450633.2:c.723G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-188G>T
  variant of: http://identifiers.org/hgnc/30413
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9067
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3179
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15251
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27636
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 965
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16522
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Cys221Phe
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: Latino
reference allele: C
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-127294297-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294297
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294297
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 60528
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.661T>C
  hgvsp: ENSP00000377056.2:p.Cys221Arg
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.722T>C
  hgvsp: ENSP00000347748.3:p.Leu241Pro
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.230T>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.722T>C
  hgvsp: ENSP00000418298.1:p.Leu241Pro
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-189T>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.722T>C
  hgvsp: ENSP00000413428.2:p.Leu241Pro
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-189T>C
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9331
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3170
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27761
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14839
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1443
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 961
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1781
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2471
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu241Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

3-127294299-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294299
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294299
    reference: chr 3
allele count: 1
allele frequency: 1.661239949498306e-5
allele num: 60196
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.659A>G
  hgvsp: ENSP00000377056.2:p.Tyr220Cys
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.720A>G
  hgvsp: ENST00000355552.3:c.720A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.228A>G
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.720A>G
  hgvsp: ENST00000489960.1:c.720A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-191A>G
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.720A>G
  hgvsp: ENST00000450633.2:c.720A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-191A>G
  variant of: http://identifiers.org/hgnc/30413
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9637
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27833
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1444
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15707
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2519
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Tyr220Cys
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

3-127294311-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294311
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294311
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 56030
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-203A>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.708A>C
  hgvsp: ENST00000450633.2:c.708A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-203A>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.647A>C
  hgvsp: ENSP00000377056.2:p.His216Pro
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.708A>C
  hgvsp: ENST00000489960.1:c.708A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.216A>C
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.708A>C
  hgvsp: ENST00000355552.3:c.708A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9025
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3540
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12639
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28688
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3710
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9829
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 8.25e1
  variant carriers: 0
hgvs: p.His216Pro
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: T
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

3-127294313-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294313
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294313
    reference: chr 3
allele count: 1
allele frequency: 1.80466324983758e-5
allele num: 55412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.706G>A
  hgvsp: ENSP00000418298.1:p.Ala236Thr
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.706G>A
  hgvsp: ENSP00000413428.2:p.Ala236Thr
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.706G>A
  hgvsp: ENSP00000347748.3:p.Ala236Thr
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-205G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.645G>A
  hgvsp: ENSP00000377056.2:p.Trp215Ter
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.214G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-205G>A
  variant of: http://identifiers.org/hgnc/30413
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8622
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28739
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2939
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3661
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12871
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1800
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1362
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3869
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Trp215Ter
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD

3-127294316-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294316
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294316
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 54800
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.703C>T
  hgvsp: ENST00000355552.3:c.703C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.211C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.703C>T
  hgvsp: ENST00000450633.2:c.703C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.703C>T
  hgvsp: ENST00000489960.1:c.703C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-208C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.642C>T
  hgvsp: ENST00000393400.2:c.642C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-208C>T
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28890
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3894
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8059
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13227
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9487
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1788
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2282
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1202
  bin: 1.75e1
  variant carriers: 1
hgvs: p.Leu235Leu
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/3-127294318-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294318
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294318
    reference: chr 3
allele count: 1
allele frequency: 1.85411799606927e-5
allele num: 53934
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.701T>G
  hgvsp: ENSP00000418298.1:p.Ile234Ser
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.640T>G
  hgvsp: ENSP00000377056.2:p.Ser214Ala
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.701T>G
  hgvsp: ENSP00000347748.3:p.Ile234Ser
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-210T>G
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-210T>G
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.209T>G
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.701T>G
  hgvsp: ENSP00000413428.2:p.Ile234Ser
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7085
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29019
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4297
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13783
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36870
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4488
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8310
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2404
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ile234Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-127294324-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294324
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294324
    reference: chr 3
allele count: 6
allele frequency: 1.188259991286093e-4
allele num: 50494
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.203C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-216C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-216C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.695C>T
  hgvsp: ENSP00000418298.1:p.Ala232Val
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.695C>T
  hgvsp: ENSP00000413428.2:p.Ala232Val
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.695C>T
  hgvsp: ENSP00000347748.3:p.Ala232Val
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.634C>T
  hgvsp: ENSP00000377056.2:p.Arg212Trp
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5264
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5210
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15071
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28833
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1493
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37229
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5672
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala232Val
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

3-127294335-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294335
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294335
    reference: chr 3
allele count: 1
allele frequency: 2.178364483945454e-5
allele num: 45906
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.684C>T
  hgvsp: ENST00000450633.2:c.684C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.623C>T
  hgvsp: ENSP00000377056.2:p.Ser208Phe
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-227C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.192C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.684C>T
  hgvsp: ENST00000489960.1:c.684C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.684C>T
  hgvsp: ENST00000355552.3:c.684C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-227C>T
  variant of: http://identifiers.org/hgnc/30413
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15484
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28586
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8536
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9040
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1837
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2680
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2006
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1708
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser208Phe
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/3-127294336-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294336
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294336
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 45008
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.622T>G
  hgvsp: ENSP00000377056.2:p.Ser208Ala
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.683T>G
  hgvsp: ENSP00000418298.1:p.Phe228Cys
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.683T>G
  hgvsp: ENSP00000347748.3:p.Phe228Cys
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.671-228T>G
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-228T>G
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.191T>G
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.683T>G
  hgvsp: ENSP00000413428.2:p.Phe228Cys
  variant of: http://identifiers.org/hgnc/30413
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15377
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28454
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9088
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2057
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Phe228Cys
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum

3-127294357-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294357
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294357
    reference: chr 3
allele count: 1
allele frequency: 3.323363243602526e-5
allele num: 30090
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.670+235G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.671-9G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.671-9G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.170G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.610-9G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.671-9G>A
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-249G>A
  variant of: http://identifiers.org/hgnc/30413
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16557
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10462
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27672
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1602
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3699
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3822
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17017
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

3-127294358-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294358
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294358
    reference: chr 3
allele count: 50
allele frequency: 1.779106177056647e-3
allele num: 28104
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.671-10C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.169C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.671-10C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.610-10C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-250C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.670+234C>T
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.671-10C>T
  variant of: http://identifiers.org/hgnc/30413
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27517
  bin: 7.5e0
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17281
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9854
  bin: 1.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4622
  bin: 1.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4177
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 9.75e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 8.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 23548
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2006
  bin: 2.75e1
  variant carriers: 3
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum

3-127294359-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294359
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294359
    reference: chr 3
allele count: 1
allele frequency: 3.510989396812022e-5
allele num: 28482
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.168C>G
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-251C>G
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.671-11C>G
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.671-11C>G
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.670+233C>G
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.671-11C>G
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.610-11C>G
  variant of: http://identifiers.org/hgnc/30413
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27569
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9773
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17440
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2031
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17794
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4116
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24487
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4137
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum

3-127294363-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 127294363
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 127294363
    reference: chr 3
allele count: 1
allele frequency: 3.728560775540641e-5
allele num: 26820
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000413428
  ensembl transcript: ENST00000450633
  gene symbol: TPRA1
  hgvsc: ENST00000450633.2:c.671-15C>G
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000296210
  ensembl transcript: ENST00000296210
  gene symbol: TPRA1
  hgvsc: ENST00000296210.7:c.610-255C>G
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418827
  ensembl transcript: ENST00000483868
  gene symbol: TPRA1
  hgvsc: ENST00000483868.1:c.670+229C>G
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000418298
  ensembl transcript: ENST00000489960
  gene symbol: TPRA1
  hgvsc: ENST00000489960.1:c.671-15C>G
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163870
  ensembl transcript: ENST00000465915
  gene symbol: TPRA1
  hgvsc: ENST00000465915.1:n.164C>G
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000347748
  ensembl transcript: ENST00000355552
  gene symbol: TPRA1
  hgvsc: ENST00000355552.3:c.671-15C>G
  variant of: http://identifiers.org/hgnc/30413
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163870
  ensembl protein: ENSP00000377056
  ensembl transcript: ENST00000393400
  gene symbol: TPRA1
  hgvsc: ENST00000393400.2:c.610-15C>G
  variant of: http://identifiers.org/hgnc/30413
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9043
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18352
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 259
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1413
bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.769285208775655e-4
allele num: 11304
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9666
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6264
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.5e0

DP
type: SiteQuality
SIO_000300: 1.481979e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.24e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.732e0

QD
type: SiteQuality
SIO_000300: 1.362e1

MQ
type: SiteQuality
SIO_000300: 5.853e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.8e-2

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9750
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63054
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6292
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.08198515995621e-5
allele num: 16442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.490568e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.11e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.713e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 8.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.78e-1

QD
type: SiteQuality
SIO_000300: 1.268e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.583180292571718e-5
allele num: 63164
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6310
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8432
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.33e-1

DP
type: SiteQuality
SIO_000300: 1.493326e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.95e-1

MQ
type: SiteQuality
SIO_000300: 5.946e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

MQRankSum
type: SiteQuality
SIO_000300: -2.36e-1

QD
type: SiteQuality
SIO_000300: 1.319e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.105e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9950
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.634351949420442e-4
allele num: 11388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64094
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.118e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.21e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.444e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.85e-1

DP
type: SiteQuality
SIO_000300: 1.512236e6

VQSLOD
type: SiteQuality
SIO_000300: 4.24e-1

QD
type: SiteQuality
SIO_000300: 9.880000000000001e0

GenotypeQuality
all individuals: 162
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 118
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variant carriers: 0

GenotypeQuality
all individuals: 47005
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.768853034023149e-5
allele num: 11404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9966
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64302
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.435e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.340000000000001e-1

QD
type: SiteQuality
SIO_000300: 2.654e1

MQRankSum
type: SiteQuality
SIO_000300: -6.23e-1

FS
type: SiteQuality
SIO_000300: 3.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.78e-1

MQ
type: SiteQuality
SIO_000300: 5.916e1

DP
type: SiteQuality
SIO_000300: 1.516385e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.713e0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 183

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 116
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GenotypeQuality
all individuals: 47037
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variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 3.000600120024005e-4
allele num: 9998
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.141552511415525e-3
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 168
allele frequency: 2.607966717377131e-3
allele num: 64418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.5625e-4
allele num: 6400
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.753463089601964e-4
allele num: 11406
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.863813229571985e-4
allele num: 16448
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.77e-1

QD
type: SiteQuality
SIO_000300: 1.215e1

MQRankSum
type: SiteQuality
SIO_000300: 2.61e-1

FS
type: SiteQuality
SIO_000300: 5.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 7.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.7e0

DP
type: SiteQuality
SIO_000300: 1.523675e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.47e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64766
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.924573243350536e-5
allele num: 10076
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.296e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.79e-1

DP
type: SiteQuality
SIO_000300: 1.523964e6

VQSLOD
type: SiteQuality
SIO_000300: 6.929999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.79e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.126e0

MQRankSum
type: SiteQuality
SIO_000300: -6.58e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64768
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10094
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6362
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.087168249330411e-5
allele num: 16428
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.034e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.225e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.38e-1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.966e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 7.86e0

DP
type: SiteQuality
SIO_000300: 1.523657e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10086
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.768853034023149e-5
allele num: 11404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64756
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16418
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-2

DP
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -8.02e-1

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 781
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GenotypeQuality
all individuals: 374
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6346
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10086
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.544544668231805e-5
allele num: 64744
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.523184e6

VQSLOD
type: SiteQuality
SIO_000300: 3.51e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.890000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 111
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6332
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10078
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16418
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.174812030075188e-4
allele num: 8512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64722
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.21e-1

FS
type: SiteQuality
SIO_000300: 2.961e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.076e0

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

DP
type: SiteQuality
SIO_000300: 1.523114e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.2e-1

QD
type: SiteQuality
SIO_000300: 1.288e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6258
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10044
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.111722283339445e-5
allele num: 16362
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64508
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.185e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.370000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.05e-1

QD
type: SiteQuality
SIO_000300: 9.550000000000001e0

DP
type: SiteQuality
SIO_000300: 1.515111e6

MQ
type: SiteQuality
SIO_000300: 5.952e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 982
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6242
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11346
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10042
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.552746809105307e-5
allele num: 64402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16332
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.83e-1

QD
type: SiteQuality
SIO_000300: 1.37e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.081e0

DP
type: SiteQuality
SIO_000300: 1.511416e6

VQSLOD
type: SiteQuality
SIO_000300: 6.11e-1

MQ
type: SiteQuality
SIO_000300: 5.717e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6574
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.556517137253681e-5
allele num: 64246
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10022
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8432
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

DP
type: SiteQuality
SIO_000300: 1.507529e6

FS
type: SiteQuality
SIO_000300: 5.721e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.523e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.143e0

QD
type: SiteQuality
SIO_000300: 1.512e1

GenotypeQuality
all individuals: 175
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 940
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GenotypeQuality
all individuals: 432
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11212
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16158
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6050
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.574753551069258e-5
allele num: 63502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9916
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.082e1

DP
type: SiteQuality
SIO_000300: 1.483588e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.439e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.49e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 780
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GenotypeQuality
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GenotypeQuality
all individuals: 176
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8274
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16132
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11186
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.009489198465576e-4
allele num: 9906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6024
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.17e-1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.479035e6

MQRankSum
type: SiteQuality
SIO_000300: 3.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.38e-1

MQ
type: SiteQuality
SIO_000300: 6.049e1

VQSLOD
type: SiteQuality
SIO_000300: 1.51e0

QD
type: SiteQuality
SIO_000300: 6.67e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.595303426711761e-5
allele num: 62684
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5914
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16000
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Latino
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8106
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Other
type: Population
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allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.997e0

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.911e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9746
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15954
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8066
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.813246053138236e-5
allele num: 62328
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

QD
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.461e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9748
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.6039521380682e-5
allele num: 62346
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8060
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.705e1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5602
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.653986106516705e-5
allele num: 60460
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.869e0

MQRankSum
type: SiteQuality
SIO_000300: -7.18e-1

MQ
type: SiteQuality
SIO_000300: 5.685e1

QD
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ReadPosRankSum
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SIO_000300: -1.632e0

VQSLOD
type: SiteQuality
SIO_000300: -2.434e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

DP
type: SiteQuality
SIO_000300: 1.384049e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4970
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.492091912861832e-4
allele num: 6702
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9064
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 54864
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.22e-1

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -4.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.44e-1

QD
type: SiteQuality
SIO_000300: 1.17e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.98e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 49272
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13826
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7810
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4374
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.294330830960394e-4
allele num: 7726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5802
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.75e1

VQSLOD
type: SiteQuality
SIO_000300: -1.085e0

MQRankSum
type: SiteQuality
SIO_000300: 8.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

FS
type: SiteQuality
SIO_000300: 4.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.323e0

QD
type: SiteQuality
SIO_000300: 1.416e1

DP
type: SiteQuality
SIO_000300: 1.061015e6

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
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allele count: 4
allele frequency: 5.278437582475588e-4
allele num: 7578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13696
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5682
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48368
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.4e-2

QD
type: SiteQuality
SIO_000300: 8.58e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

FS
type: SiteQuality
SIO_000300: 7.386e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.9e-2

DP
type: SiteQuality
SIO_000300: 1.032925e6

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7290
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5396
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.4827895839569e-5
allele num: 13364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4032
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46212
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7004
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.83e-1

DP
type: SiteQuality
SIO_000300: 9.862e5

BaseQRankSum
type: SiteQuality
SIO_000300: 8.8e-1

QD
type: SiteQuality
SIO_000300: 1.256e1

VQSLOD
type: SiteQuality
SIO_000300: 8.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.752e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.606536307720555e-4
allele num: 43572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12976
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4974
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6926
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.631578947368421e-4
allele num: 3800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.28731e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.68e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.01e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.3e-2

QD
type: SiteQuality
SIO_000300: 1.211e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.117e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3800
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6926
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.706535141800247e-5
allele num: 12976
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4974
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

QD
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.117e0

MQRankSum
type: SiteQuality
SIO_000300: 7.01e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.3e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3700
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6808
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 42762
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 6276
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.064409578860446e-4
allele num: 4844
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12832
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.5e-3

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 2.339728591483388e-4
allele num: 4274
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South Asian
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allele frequency: 0.0e0
allele num: 12292
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3292
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5552
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.22e-2

FS
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.485e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.54e-1

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 307
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GenotypeQuality
all individuals: 1275
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6114
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 5258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3064
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 508
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.621506842132858e-5
allele num: 38146
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e0

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -6.067e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.03e-1

DP
type: SiteQuality
SIO_000300: 8.27817e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

QD
type: SiteQuality
SIO_000300: 7.36e0

GenotypeQuality
all individuals: 310
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29480
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1731
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3552
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 285
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1241
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3778
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.37609723160027e-4
allele num: 5924
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2918
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4868
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.549931600547196e-5
allele num: 11696
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.106e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.49e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 4.85e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

DP
type: SiteQuality
SIO_000300: 8.07309e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.708e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -9.68e-1

GenotypeQuality
all individuals: 7481
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2058
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1330
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3557
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 75
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7230
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3006
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4206
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.021148036253776e-4
allele num: 3310
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5502
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11114
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33962
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 470
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.637e0

MQRankSum
type: SiteQuality
SIO_000300: -7.17e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.491e0

MQ
type: SiteQuality
SIO_000300: 5.829e1

FS
type: SiteQuality
SIO_000300: 2.632e0

QD
type: SiteQuality
SIO_000300: 9.630000000000001e0

DP
type: SiteQuality
SIO_000300: 7.60541e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

GenotypeQuality
all individuals: 559
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2360
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1329
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 926
bin: 9.75e1
variant carriers: 181

GenotypeQuality
all individuals: 2953
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7645
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 168
allele frequency: 1.499196858825629e-2
allele num: 11206
num of homozygotes: 3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4216
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3326
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.145922746781116e-3
allele num: 466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.897269564191779e-5
allele num: 33914
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.793e0

MQ
type: SiteQuality
SIO_000300: 4.995e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.54e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

FS
type: SiteQuality
SIO_000300: 9.05e-1

DP
type: SiteQuality
SIO_000300: 7.59196e5

ClippingRankSum
type: SiteQuality
SIO_000300: 6.1e-2

QD
type: SiteQuality
SIO_000300: 7.82e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.7e-2

GenotypeQuality
all individuals: 156
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7783
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7301
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 747
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3342
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 4.764173415912339e-4
allele num: 4198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33838
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10860
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.139e0

VQSLOD
type: SiteQuality
SIO_000300: -3.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.66e-2

FS
type: SiteQuality
SIO_000300: 2.515e0

MQRankSum
type: SiteQuality
SIO_000300: 8.129999999999999e-1

DP
type: SiteQuality
SIO_000300: 7.54319e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.813e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 7.91e0

GenotypeQuality
all individuals: 676
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2354
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6951
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32326
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2356
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5274
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.238341968911917e-4
allele num: 3088
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 446
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

QD
type: SiteQuality
SIO_000300: 1.14e1

VQSLOD
type: SiteQuality
SIO_000300: 4.28e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.83e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.33e-1

DP
type: SiteQuality
SIO_000300: 7.32886e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.133e0

GenotypeQuality
all individuals: 70
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1256
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4199
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1052
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30810
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5034
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.51123595505618e-4
allele num: 2848
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2120
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10190
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.426e0

MQ
type: SiteQuality
SIO_000300: 5.446e1

MQRankSum
type: SiteQuality
SIO_000300: -2.332e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.88e-1

FS
type: SiteQuality
SIO_000300: 1.671e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.1e-1

QD
type: SiteQuality
SIO_000300: 2.38e0

DP
type: SiteQuality
SIO_000300: 7.14778e5

GenotypeQuality
all individuals: 8737
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1030
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 746
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 308
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6743
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.25351379489849e-5
allele num: 30736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5042
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.890173410404624e-4
allele num: 3460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2808
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2140
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.14779e5

ClippingRankSum
type: SiteQuality
SIO_000300: 6.8e-2

FS
type: SiteQuality
SIO_000300: 3.327e0

VQSLOD
type: SiteQuality
SIO_000300: 7.87e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

QD
type: SiteQuality
SIO_000300: 1.355e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.96e-2

GenotypeQuality
all individuals: 288
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26019
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9306
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2944
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2883
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 985
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variant carriers: 0

GenotypeQuality
all individuals: 5853
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3092
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.910802775024777e-5
allele num: 10090
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1922
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.62e0

VQSLOD
type: SiteQuality
SIO_000300: 5.639999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.224e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.12e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.95255e5

MQRankSum
type: SiteQuality
SIO_000300: -2.54e-1

FS
type: SiteQuality
SIO_000300: 1.669e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

GenotypeQuality
all individuals: 1209
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 156
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5562
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26360
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3103
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2818
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9698
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.614022406938923e-5
allele num: 27670
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1732
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 388
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.18e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.808e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.86e-1

QD
type: SiteQuality
SIO_000300: 6.86e0

MQRankSum
type: SiteQuality
SIO_000300: 3.49e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.047e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.84e-1

DP
type: SiteQuality
SIO_000300: 6.72771e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e-1

GenotypeQuality
all individuals: 129
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3214
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2803
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3888
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1125
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 879
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27018
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.711952487008166e-4
allele num: 2694
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2300
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.05e-1

QD
type: SiteQuality
SIO_000300: 1.078e1

DP
type: SiteQuality
SIO_000300: 6.68153e5

MQRankSum
type: SiteQuality
SIO_000300: 4.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.08e-2

FS
type: SiteQuality
SIO_000300: 2.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.51e-1

GenotypeQuality
all individuals: 2803
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2694
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27018
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1652
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2300
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.08e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.35e-1

FS
type: SiteQuality
SIO_000300: 2.27e0

QD
type: SiteQuality
SIO_000300: 1.078e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

DP
type: SiteQuality
SIO_000300: 6.68153e5

VQSLOD
type: SiteQuality
SIO_000300: 8.51e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 890
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 4.399472063352398e-4
allele num: 4546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1656
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27034
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.29e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.91e-1

FS
type: SiteQuality
SIO_000300: 5.322e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

DP
type: SiteQuality
SIO_000300: 6.67207e5

QD
type: SiteQuality
SIO_000300: 1.284e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9030
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25280
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2116
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1370
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.793296089385475e-3
allele num: 358
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.40584e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.13e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.876e0

QD
type: SiteQuality
SIO_000300: 9.27e0

FS
type: SiteQuality
SIO_000300: 1.441e0

MQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.09e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 1

South Asian
type: Population
allele count: 4
allele frequency: 4.4296788482835e-4
allele num: 9030
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2116
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25280
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1370
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 1.69061707523246e-3
allele num: 2366
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.793296089385475e-3
allele num: 358
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.13e-2

FS
type: SiteQuality
SIO_000300: 1.441e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.33e-1

DP
type: SiteQuality
SIO_000300: 6.40584e5

MQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.876e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.09e-1

QD
type: SiteQuality
SIO_000300: 9.27e0

GenotypeQuality
all individuals: 3277
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25797
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 80
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2100
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.963535473642489e-5
allele num: 25230
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9032
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2368
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.291e1

DP
type: SiteQuality
SIO_000300: 6.41297e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.866e0

MQRankSum
type: SiteQuality
SIO_000300: -1.036e0

FS
type: SiteQuality
SIO_000300: 1.4771e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.36e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.005e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4278
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 4.911591355599214e-4
allele num: 2036
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8828
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 356
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.337e1

MQ
type: SiteQuality
SIO_000300: 5.829e1

VQSLOD
type: SiteQuality
SIO_000300: -2.376e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 8.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.96e-1

DP
type: SiteQuality
SIO_000300: 6.32038e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.42e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.78e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2046
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24064
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2222
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 348
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.143379830779785e-4
allele num: 8746
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1244
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.33283e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 4.36e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.81e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.383e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.035e0

VQSLOD
type: SiteQuality
SIO_000300: -2.861e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.51e-2

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2154
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 318
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2084
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1108
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23302
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4240
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -5.843e-1

QD
type: SiteQuality
SIO_000300: 7.58e0

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 6.22422e5

MQRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.278623994523361e-5
allele num: 23372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4272
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2288
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 318
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 4.76e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.94e-2

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 6.31055e5

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.61e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3187
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24018
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1134
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2434
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.675943270002676e-4
allele num: 7474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 330
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2448
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.41e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

DP
type: SiteQuality
SIO_000300: 6.44968e5

FS
type: SiteQuality
SIO_000300: 1.067e0

VQSLOD
type: SiteQuality
SIO_000300: -7.301e-1

MQ
type: SiteQuality
SIO_000300: 5.863e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.49e0

QD
type: SiteQuality
SIO_000300: 1.146e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-2

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 33738
bin: 2.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 4.424778761061947e-4
allele num: 4520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2746
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7436
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2754
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1208
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.575051189163648e-4
allele num: 25396
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.41e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.55e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.93e0

FS
type: SiteQuality
SIO_000300: 1.102e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.69e-1

DP
type: SiteQuality
SIO_000300: 6.73489e5

QD
type: SiteQuality
SIO_000300: 1.229e1

GenotypeQuality
all individuals: 5781
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 5

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 350
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2818
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2788
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25514
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 6.69702652022502e-4
allele num: 7466
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.38e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.67e0

DP
type: SiteQuality
SIO_000300: 6.78944e5

FS
type: SiteQuality
SIO_000300: 8.070000000000001e-1

GenotypeQuality
all individuals: 638
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 744
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 455
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.889899407468652e-5
allele num: 29028
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7860
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4974
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1438
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 376
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.8e-1

QD
type: SiteQuality
SIO_000300: 7.38e0

DP
type: SiteQuality
SIO_000300: 7.41398e5

MQRankSum
type: SiteQuality
SIO_000300: -4.82e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.8e-3

GenotypeQuality
all individuals: 2572
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 540
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GenotypeQuality
all individuals: 312
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.235483073881888e-4
allele num: 8094
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5130
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.266906239790918e-5
allele num: 30610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3750
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.48e-1

QD
type: SiteQuality
SIO_000300: 4.5e0

VQSLOD
type: SiteQuality
SIO_000300: -2.212e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.48e-1

FS
type: SiteQuality
SIO_000300: 1.45e0

DP
type: SiteQuality
SIO_000300: 7.69542e5

ClippingRankSum
type: SiteQuality
SIO_000300: 8.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.699999999999999e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1258
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2838
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 743
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.47332988089073e-5
allele num: 30896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3798
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5148
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8104
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3902
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1534
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.143e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.55e-1

FS
type: SiteQuality
SIO_000300: 2.156e0

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.83e-1

DP
type: SiteQuality
SIO_000300: 7.77526e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 131
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4708
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34582
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 430
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South Asian
type: Population
allele count: 1
allele frequency: 1.146000458400183e-4
allele num: 8726
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.524e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-3

DP
type: SiteQuality
SIO_000300: 8.41337e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.3e0

QD
type: SiteQuality
SIO_000300: 5.98e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.92e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4752
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1800
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4544
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South Asian
type: Population
allele count: 1
allele frequency: 1.148369315571888e-4
allele num: 8708
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 34646
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5626
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.886336084973734e-5
allele num: 34646
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 4752
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1800
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South Asian
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East Asian
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allele frequency: 0.0e0
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Other
type: Population
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8760
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4520
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1830
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Other
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 34568
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.94e-1

InbreedingCoeff
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SIO_000300: -7.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.983e-1

ReadPosRankSum
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SIO_000300: 1.85e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.39634e5

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 8.039999999999999e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.764353239566521e-5
allele num: 34696
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8778
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5684
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 428
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4802
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.173e1

FS
type: SiteQuality
SIO_000300: 1.038e0

DP
type: SiteQuality
SIO_000300: 8.42516e5

MQRankSum
type: SiteQuality
SIO_000300: 3.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.82e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.12e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5684
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1810
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4552
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8748
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4764
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 428
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.3704e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.5e-3

QD
type: SiteQuality
SIO_000300: 9.23e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8708
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.76056338028169e-4
allele num: 5680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34304
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.87e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.66e-1

DP
type: SiteQuality
SIO_000300: 8.32602e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.4e0

QD
type: SiteQuality
SIO_000300: 1.098e1

FS
type: SiteQuality
SIO_000300: 3.91e0

VQSLOD
type: SiteQuality
SIO_000300: 6.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.66e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 1816
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1698
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4206
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 31860
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8122
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.572e1

QD
type: SiteQuality
SIO_000300: 9.710000000000001e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.599999999999999e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.514e0

DP
type: SiteQuality
SIO_000300: 7.65432e5

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 114
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4262
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.171582619727244e-5
allele num: 31530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1662
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4140
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8046
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.883e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.23e-1

QD
type: SiteQuality
SIO_000300: 7.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.03e-2

DP
type: SiteQuality
SIO_000300: 7.60181e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.596e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4104
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4180
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1658
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7946
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31198
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.5009e5

ClippingRankSum
type: SiteQuality
SIO_000300: -2.37e-1

QD
type: SiteQuality
SIO_000300: 1.176e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.599999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.98e-1

FS
type: SiteQuality
SIO_000300: 2.152e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.064e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7796
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 372
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5288
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 3.258178026847387e-5
allele num: 30692
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 4118
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4036
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.276e0

QD
type: SiteQuality
SIO_000300: 8.9e0

MQRankSum
type: SiteQuality
SIO_000300: -3.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.33118e5

BaseQRankSum
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 4.05e-1

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 344
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.760905577029266e-4
allele num: 7244
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.669514148424986e-4
allele num: 3746
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1520
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 1.042752867570386e-4
allele num: 28770
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3764
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5106
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.509e0

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.870000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.55e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.94e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.283e0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 90
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3380
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4800
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.962085308056872e-4
allele num: 3376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 304
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6360
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -1.84e-2

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 6.33847e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

QD
type: SiteQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1867
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GenotypeQuality
all individuals: 3545
bin: 6.25e1
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GenotypeQuality
all individuals: 548
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3278
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3330
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 304
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.718e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.93e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.29e-1

QD
type: SiteQuality
SIO_000300: 1.11e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.24653e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQ
type: SiteQuality
SIO_000300: 5.79e1

MQRankSum
type: SiteQuality
SIO_000300: -7.29e-1

GenotypeQuality
all individuals: 124
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25861
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2078
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2061
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 62
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3728
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4030
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2054
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.725409366769724e-5
allele num: 17466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.24501e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.291e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.32e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.16e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

VQSLOD
type: SiteQuality
SIO_000300: 3.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

QD
type: SiteQuality
SIO_000300: 1.562e1

GenotypeQuality
all individuals: 1584
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17627
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 110
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 93
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 118
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 9.25e1
variant carriers: 10

GenotypeQuality
all individuals: 429
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 139
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1943
bin: 6.25e1
variant carriers: 5

GenotypeQuality
all individuals: 1521
bin: 3.25e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 2.771618625277162e-4
allele num: 3608
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 1.863354037267081e-3
allele num: 1610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 212
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 706
num of homozygotes: 0

South Asian
type: Population
allele count: 31
allele frequency: 8.297644539614561e-3
allele num: 3736
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 9.183298640871801e-4
allele num: 16334
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.51e-2

FS
type: SiteQuality
SIO_000300: 5.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.01e0

DP
type: SiteQuality
SIO_000300: 5.15054e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

QD
type: SiteQuality
SIO_000300: 1.269e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 115
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1541
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2003
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 140
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3772
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 212
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1924
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.75178866263071e-4
allele num: 3634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16568
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.7e-1

QD
type: SiteQuality
SIO_000300: 9.43e0

VQSLOD
type: SiteQuality
SIO_000300: -4.547e-1

DP
type: SiteQuality
SIO_000300: 5.1299e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.43e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.76e-1