http://identifiers.org/exac.variant/2-121744153-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121744153
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121744153
    reference: chr 2
allele count: 2
allele frequency: 1.653931394925738e-5
allele num: 120924
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2256C>A
  hgvsp: ENSP00000354586.4:p.His752Gln
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1272C>A
  hgvsp: ENSP00000312694.11:p.His424Gln
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1355C>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1304C>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2256C>A
  hgvsp: ENSP00000390436.1:p.His752Gln
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1355C>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1355C>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1304C>A
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6666
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20629
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 3.75e1
  variant carriers: 0
hgvs: p.His752Gln
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

2-121744156-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121744156
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121744156
    reference: chr 2
allele count: 12
allele frequency: 9.92490157805935e-5
allele num: 120908
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1358G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1358G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1358G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2259G>A
  hgvsp: ENST00000361492.4:c.2259G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1307G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1307G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1275G>A
  hgvsp: ENST00000314490.11:c.1275G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2259G>A
  hgvsp: ENST00000452319.1:c.2259G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20622
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30550
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6632
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8551
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr753Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/2-121744157-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121744157
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121744157
    reference: chr 2
allele count: 5
allele frequency: 4.135991397137894e-5
allele num: 120890
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2260C>A
  hgvsp: ENST00000452319.1:c.2260C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1276C>A
  hgvsp: ENST00000314490.11:c.1276C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1308C>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2260C>A
  hgvsp: ENST00000361492.4:c.2260C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1359C>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1308C>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1359C>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1359C>A
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30545
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20601
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6640
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2769
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg754Arg
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
reference allele: C
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

2-121744157-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121744157
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121744157
    reference: chr 2
allele count: 4
allele frequency: 3.308793117710315e-5
allele num: 120890
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1308C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1276C>T
  hgvsp: ENSP00000312694.11:p.Arg426Trp
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2260C>T
  hgvsp: ENSP00000390436.1:p.Arg754Trp
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2260C>T
  hgvsp: ENSP00000354586.4:p.Arg754Trp
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1359C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1359C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1359C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1308C>T
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20601
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30545
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6640
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8538
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41789
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg754Trp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
reference allele: C
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

2-121744158-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121744158
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121744158
    reference: chr 2
allele count: 20
allele frequency: 1.654506047219603e-4
allele num: 120882
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1277G>A
  hgvsp: ENSP00000312694.11:p.Arg426Gln
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1309G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2261G>A
  hgvsp: ENSP00000390436.1:p.Arg754Gln
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1360G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1360G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1309G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2261G>A
  hgvsp: ENSP00000354586.4:p.Arg754Gln
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1360G>A
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30526
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6598
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8523
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1578
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg754Gln
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ

2-121744158-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121744158
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121744158
    reference: chr 2
allele count: 1
allele frequency: 8.272530236098013e-6
allele num: 120882
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1309G>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1309G>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1277G>C
  hgvsp: ENSP00000312694.11:p.Arg426Pro
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2261G>C
  hgvsp: ENSP00000354586.4:p.Arg754Pro
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1360G>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2261G>C
  hgvsp: ENSP00000390436.1:p.Arg754Pro
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1360G>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1360G>C
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6598
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30526
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2764
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1088
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg754Pro
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

2-121744159-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121744159
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121744159
    reference: chr 2
allele count: 1
allele frequency: 8.272940865018697e-6
allele num: 120876
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1310G>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1361G>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1278G>C
  hgvsp: ENST00000314490.11:c.1278G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1310G>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2262G>C
  hgvsp: ENST00000361492.4:c.2262G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2262G>C
  hgvsp: ENST00000452319.1:c.2262G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1361G>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1361G>C
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30469
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20569
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41727
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg754Arg
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

2-121744159-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121744159
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121744159
    reference: chr 2
allele count: 127
allele frequency: 1.050663489857375e-3
allele num: 120876
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2262G>T
  hgvsp: ENST00000361492.4:c.2262G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2262G>T
  hgvsp: ENST00000452319.1:c.2262G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1310G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1278G>T
  hgvsp: ENST00000314490.11:c.1278G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1310G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1361G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1361G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1361G>T
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6589
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 30469
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20569
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8500
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2755
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg754Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

2-121744169-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121744169
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121744169
    reference: chr 2
allele count: 1
allele frequency: 8.28239659427852e-6
allele num: 120738
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1320C>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1320C>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1371C>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2272C>G
  hgvsp: ENSP00000390436.1:p.Leu758Val
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2272C>G
  hgvsp: ENSP00000354586.4:p.Leu758Val
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1288C>G
  hgvsp: ENSP00000312694.11:p.Leu430Val
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1371C>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1371C>G
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20495
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30312
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6565
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2744
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu758Val
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

2-121744182-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121744182
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121744182
    reference: chr 2
allele count: 2
allele frequency: 1.660633033312299e-5
allele num: 120436
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1301C>T
  hgvsp: ENSP00000312694.11:p.Pro434Leu
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1384C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2285C>T
  hgvsp: ENSP00000390436.1:p.Pro762Leu
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1384C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2285C>T
  hgvsp: ENSP00000354586.4:p.Pro762Leu
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1384C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1333C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1333C>T
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6458
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20036
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1553
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro762Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

2-121744183-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121744183
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121744183
    reference: chr 2
allele count: 3
allele frequency: 2.492025518341308e-5
allele num: 120384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1334G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1385G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1385G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2286G>A
  hgvsp: ENST00000452319.1:c.2286G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1385G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2286G>A
  hgvsp: ENST00000361492.4:c.2286G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1334G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1302G>A
  hgvsp: ENST00000314490.11:c.1302G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6421
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29881
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro762Pro
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

2-121744189-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121744189
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121744189
    reference: chr 2
allele count: 11
allele frequency: 9.143351121307333e-5
allele num: 120306
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1340T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1308T>C
  hgvsp: ENST00000314490.11:c.1308T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1391T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2292T>C
  hgvsp: ENST00000361492.4:c.2292T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1391T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2292T>C
  hgvsp: ENST00000452319.1:c.2292T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1340T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1391T>C
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19755
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29598
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6318
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1361
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
hgvs: c.2292T>C
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: T
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-121744193-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121744193
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121744193
    reference: chr 2
allele count: 1
allele frequency: 8.320713584396998e-6
allele num: 120182
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1309+3G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2293+3G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2293+3G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1341+3G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1341+3G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1392+3G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1392+3G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1392+3G>A
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19465
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29300
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1542
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
hgvs: c.2293+3G>A
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

2-121744201-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121744201
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121744201
    reference: chr 2
allele count: 1
allele frequency: 8.335834083558401e-6
allele num: 119964
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1341+11G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1392+11G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1392+11G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1392+11G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1309+11G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1341+11G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2293+11G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2293+11G>A
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28204
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2635
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2605
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1955
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-121744204-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121744204
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121744204
    reference: chr 2
allele count: 3
allele frequency: 2.503087140806995e-5
allele num: 119852
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2293+14T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1341+14T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1392+14T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1392+14T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1341+14T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1392+14T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2293+14T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1309+14T>C
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3019
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6086
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3049
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18260
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 992
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7778
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1065
  bin: 9.75e1
  variant carriers: 3
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

2-121744216-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121744216
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121744216
    reference: chr 2
allele count: 2
allele frequency: 1.675238302648552e-5
allele num: 119386
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1392+26A>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1341+26A>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1392+26A>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1309+26A>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1341+26A>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1392+26A>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2293+26A>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2293+26A>G
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5449
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3848
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7013
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26049
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27885
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3256
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1497
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

2-121744221-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121744221
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121744221
    reference: chr 2
allele count: 3
allele frequency: 2.521813688404701e-5
allele num: 118962
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1392+31G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2293+31G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2293+31G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1341+31G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1392+31G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1309+31G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1341+31G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1392+31G>A
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26159
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15011
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4038
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7337
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23182
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4063
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2156
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3147
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1585
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1517
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum

2-121744225-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121744225
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121744225
    reference: chr 2
allele count: 75553
allele frequency: 6.409858318486468e-1
allele num: 117870
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2293+35A>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1392+35A>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2293+35A>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1392+35A>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1341+35A>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1341+35A>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1309+35A>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1392+35A>G
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3119
  bin: 4.25e1
  variant carriers: 3048
genotype depth: GenotypeDepth
  all individuals: 8864
  bin: 3.25e1
  variant carriers: 8271
genotype depth: GenotypeDepth
  all individuals: 5630
  bin: 3.75e1
  variant carriers: 5511
genotype depth: GenotypeDepth
  all individuals: 8398
  bin: 1.75e1
  variant carriers: 6828
genotype depth: GenotypeDepth
  all individuals: 4390
  bin: 1.25e1
  variant carriers: 2857
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 4.75e1
  variant carriers: 1633
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 5.25e1
  variant carriers: 878
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 7.5e0
  variant carriers: 655
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 161
genotype depth: GenotypeDepth
  all individuals: 12396
  bin: 2.75e1
  variant carriers: 10551
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.75e1
  variant carriers: 464
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 258
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 12874
  bin: 2.25e1
  variant carriers: 10202
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.75e1
  variant carriers: 135
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 68
genotype quality: GenotypeQuality
  all individuals: 2026
  bin: 8.25e1
  variant carriers: 1940
genotype quality: GenotypeQuality
  all individuals: 2179
  bin: 7.75e1
  variant carriers: 2021
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 2.5e0
  variant carriers: 66
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 2.25e1
  variant carriers: 283
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 4.25e1
  variant carriers: 554
genotype quality: GenotypeQuality
  all individuals: 1630
  bin: 5.25e1
  variant carriers: 1457
genotype quality: GenotypeQuality
  all individuals: 2583
  bin: 6.75e1
  variant carriers: 2009
num of homozygotes: 24703
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD

2-121744229-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121744229
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121744229
    reference: chr 2
allele count: 55
allele frequency: 4.729962160302717e-4
allele num: 116280
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1341+39G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1392+39G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1341+39G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2293+39G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2293+39G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1309+39G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1392+39G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1392+39G>T
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6401
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9235
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 10007
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 13811
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14517
  bin: 2.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2220
  bin: 9.75e1
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 2540
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5685
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2216
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1441
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

2-121744235-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121744235
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121744235
    reference: chr 2
allele count: 1
allele frequency: 8.685833405715278e-6
allele num: 115130
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1341+45G>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1341+45G>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1392+45G>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2293+45G>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1309+45G>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1392+45G>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2293+45G>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1392+45G>C
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11094
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5271
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12222
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9810
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12772
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2370
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6302
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5491
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

2-121745739-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745739
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745739
    reference: chr 2
allele count: 1
allele frequency: 8.805297266835728e-6
allele num: 113568
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1393-45G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1393-45G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1393-45G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1310-45G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1342-45G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2294-45G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2294-45G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1342-45G>A
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2935
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5309
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6478
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21769
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2160
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2390
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

2-121745749-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745749
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745749
    reference: chr 2
allele count: 1
allele frequency: 8.802197028378284e-6
allele num: 113608
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1310-35C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2294-35C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2294-35C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1393-35C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1393-35C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1342-35C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1342-35C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1393-35C>T
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21827
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10057
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2381
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

2-121745750-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745750
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745750
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 113616
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1393-34T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1393-34T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1342-34T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1342-34T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1393-34T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2294-34T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2294-34T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1310-34T>C
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2990
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21835
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7330
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2130
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP

2-121745751-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745751
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745751
    reference: chr 2
allele count: 1
allele frequency: 8.80266192496611e-6
allele num: 113602
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2294-33T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1342-33T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2294-33T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1310-33T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1393-33T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1393-33T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1393-33T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1342-33T>C
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2986
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10053
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2130
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37125
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

2-121745753-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745753
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745753
    reference: chr 2
allele count: 1
allele frequency: 8.804211934989699e-6
allele num: 113582
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1393-31T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2294-31T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1310-31T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1393-31T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1342-31T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1342-31T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1393-31T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2294-31T>C
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2773
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21846
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2994
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7535
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2127
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 452
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/2-121745756-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745756
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745756
    reference: chr 2
allele count: 1
allele frequency: 8.805917576611483e-6
allele num: 113560
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2294-28C>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1342-28C>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1393-28C>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2294-28C>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1310-28C>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1393-28C>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1393-28C>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1342-28C>A
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2990
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7734
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21867
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17181
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2381
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37462
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4043
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

2-121745757-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745757
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745757
    reference: chr 2
allele count: 4
allele frequency: 3.520630897056752e-5
allele num: 113616
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1393-27G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2294-27G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1393-27G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2294-27G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1342-27G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1393-27G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1310-27G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1342-27G>A
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7835
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17159
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2990
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21911
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

2-121745760-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745760
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745760
    reference: chr 2
allele count: 2
allele frequency: 1.760222492123004e-5
allele num: 113622
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1342-24G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1310-24G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1393-24G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1393-24G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2294-24G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1342-24G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1393-24G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2294-24G>A
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7906
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21910
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2990
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10059
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37729
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

2-121745765-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745765
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745765
    reference: chr 2
allele count: 1
allele frequency: 8.808710052499912e-6
allele num: 113524
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1393-19C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1310-19C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1342-19C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2294-19C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1342-19C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1393-19C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2294-19C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1393-19C>T
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2998
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7880
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17121
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21906
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

2-121745766-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745766
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745766
    reference: chr 2
allele count: 1
allele frequency: 8.807934187115753e-6
allele num: 113534
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1342-18C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1342-18C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1393-18C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1310-18C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2294-18C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2294-18C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1393-18C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1393-18C>T
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7939
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17109
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2988
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5269
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10019
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4263
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP

2-121745780-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745780
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745780
    reference: chr 2
allele count: 31
allele frequency: 2.742100980079963e-4
allele num: 113052
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2294-4G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1393-4G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2294-4G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1393-4G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1342-4G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1310-4G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1342-4G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1393-4G>A
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21695
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7866
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3055
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16786
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5171
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4946
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1938
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2237
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 4.75e1
  variant carriers: 0
hgvs: c.2294-4G>A
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

2-121745784-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745784
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745784
    reference: chr 2
allele count: 4
allele frequency: 3.546476575522219e-5
allele num: 112788
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1393G>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1342G>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1393G>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2294G>C
  hgvsp: ENSP00000390436.1:p.Gly765Ala
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1342G>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1310G>C
  hgvsp: ENSP00000312694.11:p.Gly437Ala
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2294G>C
  hgvsp: ENSP00000354586.4:p.Gly765Ala
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1393G>C
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3472
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5077
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7832
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16526
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21395
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 9.75e1
  variant carriers: 4
hgvs: p.Gly765Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ

http://identifiers.org/exac.variant/2-121745787-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745787
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745787
    reference: chr 2
allele count: 1
allele frequency: 8.875004437502219e-6
allele num: 112676
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2297C>A
  hgvsp: ENSP00000354586.4:p.Ser766Tyr
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2297C>A
  hgvsp: ENSP00000390436.1:p.Ser766Tyr
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1396C>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1396C>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1313C>A
  hgvsp: ENSP00000312694.11:p.Ser438Tyr
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1396C>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1345C>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1345C>A
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16389
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21285
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5051
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7861
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1885
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser766Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

2-121745792-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745792
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745792
    reference: chr 2
allele count: 16
allele frequency: 1.424552156415827e-4
allele num: 112316
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1401C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1350C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1318C>T
  hgvsp: ENST00000314490.11:c.1318C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1401C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2302C>T
  hgvsp: ENST00000452319.1:c.2302C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2302C>T
  hgvsp: ENST00000361492.4:c.2302C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1401C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1350C>T
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20945
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16156
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7674
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4070
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5007
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9391
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu768Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

2-121745794-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745794
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745794
    reference: chr 2
allele count: 3
allele frequency: 2.678093197643278e-5
allele num: 112020
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1403G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1403G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1320G>A
  hgvsp: ENST00000314490.11:c.1320G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1352G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2304G>A
  hgvsp: ENST00000452319.1:c.2304G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2304G>A
  hgvsp: ENST00000361492.4:c.2304G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1352G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1403G>A
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7525
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4382
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16016
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4978
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20738
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36046
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu768Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

2-121745797-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745797
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745797
    reference: chr 2
allele count: 1
allele frequency: 8.956400243614087e-6
allele num: 111652
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1406A>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2307A>G
  hgvsp: ENST00000361492.4:c.2307A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1406A>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1406A>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1355A>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1323A>G
  hgvsp: ENST00000314490.11:c.1323A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2307A>G
  hgvsp: ENST00000452319.1:c.2307A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1355A>G
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20311
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4888
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15812
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4949
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7195
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7268
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9210
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1021
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Glu769Glu
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum

2-121745805-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745805
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745805
    reference: chr 2
allele count: 2
allele frequency: 1.851131967197941e-5
allele num: 108042
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1363G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2315G>T
  hgvsp: ENSP00000354586.4:p.Ser772Ile
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1414G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2315G>T
  hgvsp: ENSP00000390436.1:p.Ser772Ile
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1414G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1363G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1414G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1331G>T
  hgvsp: ENSP00000312694.11:p.Ser444Ile
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2911
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4686
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17443
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4719
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14548
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7563
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5710
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1734
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1375
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser772Ile
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP

2-121745812-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745812
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745812
    reference: chr 2
allele count: 8
allele frequency: 8.154112730608501e-5
allele num: 98110
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1421T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2322T>C
  hgvsp: ENST00000361492.4:c.2322T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1421T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1370T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1338T>C
  hgvsp: ENST00000314490.11:c.1338T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2322T>C
  hgvsp: ENST00000452319.1:c.2322T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1421T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1370T>C
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5232
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2290
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12711
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12877
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9941
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5115
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2725
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17807
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3094
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3047
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser774Ser
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD

2-121745816-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745816
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745816
    reference: chr 2
allele count: 1
allele frequency: 1.04848179835598e-5
allele num: 95376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2326G>A
  hgvsp: ENSP00000354586.4:p.Gly776Ser
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2326G>A
  hgvsp: ENSP00000390436.1:p.Gly776Ser
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1425G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1374G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1342G>A
  hgvsp: ENSP00000312694.11:p.Gly448Ser
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1425G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1425G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1374G>A
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5150
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2611
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14531
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8087
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9417
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5628
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20167
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3132
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly776Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

2-121745817-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745817
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745817
    reference: chr 2
allele count: 4
allele frequency: 4.242951396991747e-5
allele num: 94274
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1426G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2327G>A
  hgvsp: ENSP00000354586.4:p.Gly776Asp
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1426G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2327G>A
  hgvsp: ENSP00000390436.1:p.Gly776Asp
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1375G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1343G>A
  hgvsp: ENSP00000312694.11:p.Gly448Asp
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1375G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1426G>A
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11459
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5765
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9809
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1050
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20704
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18266
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly776Asp
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

2-121745821-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745821
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745821
    reference: chr 2
allele count: 1
allele frequency: 1.223510987128664e-5
allele num: 81732
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2331C>T
  hgvsp: ENST00000452319.1:c.2331C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1430C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2331C>T
  hgvsp: ENST00000361492.4:c.2331C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1379C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1347C>T
  hgvsp: ENST00000314490.11:c.1347C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1430C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1430C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1379C>T
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7070
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4952
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20098
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10197
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4484
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly777Gly
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

2-121745825-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745825
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745825
    reference: chr 2
allele count: 1
allele frequency: 1.238083446824316e-5
allele num: 80770
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1434C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1383C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1434C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1383C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1351C>T
  hgvsp: ENSP00000312694.11:p.Pro451Ser
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2335C>T
  hgvsp: ENSP00000354586.4:p.Pro779Ser
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2335C>T
  hgvsp: ENSP00000390436.1:p.Pro779Ser
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1434C>T
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6601
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3976
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14072
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20372
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4388
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro779Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

2-121745829-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745829
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745829
    reference: chr 2
allele count: 4
allele frequency: 5.253204454717378e-5
allele num: 76144
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1438C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1438C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2339C>T
  hgvsp: ENSP00000354586.4:p.Ala780Val
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1387C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1387C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1355C>T
  hgvsp: ENSP00000312694.11:p.Ala452Val
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1438C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2339C>T
  hgvsp: ENSP00000390436.1:p.Ala780Val
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6211
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4376
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5745
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20653
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5677
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1751
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4631
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala780Val
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

2-121745832-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745832
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745832
    reference: chr 2
allele count: 1
allele frequency: 1.342786550649909e-5
allele num: 74472
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1441G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1358G>A
  hgvsp: ENSP00000312694.11:p.Gly453Glu
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2342G>A
  hgvsp: ENSP00000354586.4:p.Gly781Glu
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1390G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1390G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1441G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2342G>A
  hgvsp: ENSP00000390436.1:p.Gly781Glu
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1441G>A
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4701
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5984
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16248
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20646
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4775
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1218
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25511
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7863
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5788
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly781Glu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

2-121745839-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745839
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745839
    reference: chr 2
allele count: 2
allele frequency: 2.807253944191791e-5
allele num: 71244
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1448G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1448G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2349G>T
  hgvsp: ENST00000452319.1:c.2349G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2349G>T
  hgvsp: ENST00000361492.4:c.2349G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1397G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1365G>T
  hgvsp: ENST00000314490.11:c.1365G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1397G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1448G>T
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21361
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5003
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5964
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3559
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2058
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4927
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4954
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu783Leu
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

2-121745841-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745841
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745841
    reference: chr 2
allele count: 1
allele frequency: 1.407935122349562e-5
allele num: 71026
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1399C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2351C>T
  hgvsp: ENSP00000390436.1:p.Pro784Leu
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1450C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1367C>T
  hgvsp: ENSP00000312694.11:p.Pro456Leu
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1450C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2351C>T
  hgvsp: ENSP00000354586.4:p.Pro784Leu
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1399C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1450C>T
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17501
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21564
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5076
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5790
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5004
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3472
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4975
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1722
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro784Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

2-121745844-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745844
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745844
    reference: chr 2
allele count: 1
allele frequency: 1.433650648010093e-5
allele num: 69752
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2354A>G
  hgvsp: ENSP00000354586.4:p.Asn785Ser
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1453A>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1453A>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1370A>G
  hgvsp: ENSP00000312694.11:p.Asn457Ser
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2354A>G
  hgvsp: ENSP00000390436.1:p.Asn785Ser
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1402A>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1402A>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1453A>G
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3252
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17955
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21735
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4737
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5084
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5700
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5740
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4838
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27386
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asn785Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-121745845-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745845
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745845
    reference: chr 2
allele count: 1
allele frequency: 1.422151430684339e-5
allele num: 70316
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2355C>T
  hgvsp: ENST00000361492.4:c.2355C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1454C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1371C>T
  hgvsp: ENST00000314490.11:c.1371C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1454C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1454C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2355C>T
  hgvsp: ENST00000452319.1:c.2355C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1403C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1403C>T
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5048
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5614
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4666
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21833
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5732
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1506
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28555
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asn785Asn
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

2-121745848-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745848
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745848
    reference: chr 2
allele count: 1
allele frequency: 1.454037863145956e-5
allele num: 68774
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1457G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1406G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2358G>A
  hgvsp: ENST00000361492.4:c.2358G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1457G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1457G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1406G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2358G>A
  hgvsp: ENST00000452319.1:c.2358G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1374G>A
  hgvsp: ENST00000314490.11:c.1374G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5760
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4343
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5252
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21704
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18653
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4970
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1805
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro786Pro
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

2-121745848-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745848
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745848
    reference: chr 2
allele count: 1
allele frequency: 1.454037863145956e-5
allele num: 68774
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1406G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1457G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1406G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1457G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1457G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2358G>T
  hgvsp: ENST00000452319.1:c.2358G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2358G>T
  hgvsp: ENST00000361492.4:c.2358G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1374G>T
  hgvsp: ENST00000314490.11:c.1374G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21704
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4343
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5252
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18653
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5760
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1333
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5834
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28484
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro786Pro
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

2-121745849-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745849
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745849
    reference: chr 2
allele count: 1
allele frequency: 1.460749656723831e-5
allele num: 68458
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1458C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1407C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1458C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2359C>T
  hgvsp: ENSP00000390436.1:p.Arg787Trp
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1407C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1375C>T
  hgvsp: ENSP00000312694.11:p.Arg459Trp
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2359C>T
  hgvsp: ENSP00000354586.4:p.Arg787Trp
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1458C>T
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5716
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5236
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21640
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18724
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4393
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2417
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5871
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1539
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1350
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg787Trp
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS

2-121745857-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745857
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745857
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 64606
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1383G>A
  hgvsp: ENST00000314490.11:c.1383G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2367G>A
  hgvsp: ENST00000361492.4:c.2367G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2367G>A
  hgvsp: ENST00000452319.1:c.2367G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1466G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1415G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1415G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1466G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1466G>A
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: synonymous
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20030
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5893
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20941
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2038
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4729
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5064
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser789Ser
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD

2-121745857-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745857
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745857
    reference: chr 2
allele count: 1
allele frequency: 1.547843853512058e-5
allele num: 64606
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1415G>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1466G>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2367G>C
  hgvsp: ENST00000452319.1:c.2367G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1466G>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1383G>C
  hgvsp: ENST00000314490.11:c.1383G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1466G>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1415G>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2367G>C
  hgvsp: ENST00000361492.4:c.2367G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5893
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20030
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20941
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2038
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6460
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4729
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ser789Ser
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

2-121745871-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745871
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745871
    reference: chr 2
allele count: 1
allele frequency: 1.703693607741584e-5
allele num: 58696
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1480G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2381G>T
  hgvsp: ENSP00000390436.1:p.Ser794Ile
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2381G>T
  hgvsp: ENSP00000354586.4:p.Ser794Ile
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1397G>T
  hgvsp: ENSP00000312694.11:p.Ser466Ile
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1429G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1429G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1480G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1480G>T
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6692
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4368
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22517
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18483
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5590
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2252
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4858
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser794Ile
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

2-121745878-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745878
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745878
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 57750
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2388G>A
  hgvsp: ENST00000452319.1:c.2388G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1487G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1436G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1487G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1404G>A
  hgvsp: ENST00000314490.11:c.1404G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1436G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2388G>A
  hgvsp: ENST00000361492.4:c.2388G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1487G>A
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 17809
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4984
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23105
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6690
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4729
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val796Val
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

2-121745894-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745894
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745894
    reference: chr 2
allele count: 3
allele frequency: 5.272593061267531e-5
allele num: 56898
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1503C>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1452C>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1452C>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1420C>G
  hgvsp: ENSP00000312694.11:p.Leu474Val
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2404C>G
  hgvsp: ENSP00000390436.1:p.Leu802Val
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1503C>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2404C>G
  hgvsp: ENSP00000354586.4:p.Leu802Val
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1503C>G
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4798
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6416
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17000
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23763
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5727
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1816
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4468
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu802Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP

2-121745903-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745903
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745903
    reference: chr 2
allele count: 2
allele frequency: 3.511975837606237e-5
allele num: 56948
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1461C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1429C>T
  hgvsp: ENSP00000312694.11:p.Arg477Cys
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1512C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2413C>T
  hgvsp: ENSP00000390436.1:p.Arg805Cys
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1512C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2413C>T
  hgvsp: ENSP00000354586.4:p.Arg805Cys
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1512C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1461C>T
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23948
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16582
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4641
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6329
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4305
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1605
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg805Cys
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

2-121745906-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745906
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745906
    reference: chr 2
allele count: 1
allele frequency: 1.730343300110742e-5
allele num: 57792
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1432C>T
  hgvsp: ENSP00000312694.11:p.Arg478Cys
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1515C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1464C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2416C>T
  hgvsp: ENSP00000354586.4:p.Arg806Cys
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1515C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2416C>T
  hgvsp: ENSP00000390436.1:p.Arg806Cys
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1464C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1515C>T
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16114
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5823
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23961
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7487
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4242
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5876
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7216
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1301
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg806Cys
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum

2-121745925-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745925
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745925
    reference: chr 2
allele count: 1
allele frequency: 1.622270529833555e-5
allele num: 61642
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1451C>T
  hgvsp: ENSP00000312694.11:p.Thr484Met
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1534C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1483C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1483C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2435C>T
  hgvsp: ENSP00000354586.4:p.Thr812Met
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1534C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1534C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2435C>T
  hgvsp: ENSP00000390436.1:p.Thr812Met
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5285
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13569
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22696
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1422
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr812Met
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

2-121745926-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745926
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745926
    reference: chr 2
allele count: 2
allele frequency: 3.232375472734913e-5
allele num: 61874
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2436G>T
  hgvsp: ENST00000452319.1:c.2436G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1535G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1535G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1535G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2436G>T
  hgvsp: ENST00000361492.4:c.2436G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1484G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1452G>T
  hgvsp: ENST00000314490.11:c.1452G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1484G>T
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3574
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13421
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12204
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22638
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5249
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3447
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5271
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2939
  bin: 3.25e1
  variant carriers: 1
hgvs: p.Thr812Thr
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD

2-121745929-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745929
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745929
    reference: chr 2
allele count: 1
allele frequency: 1.605394124257505e-5
allele num: 62290
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1455C>G
  hgvsp: ENST00000314490.11:c.1455C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1538C>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2439C>G
  hgvsp: ENST00000361492.4:c.2439C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1538C>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2439C>G
  hgvsp: ENST00000452319.1:c.2439C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1487C>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1538C>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1487C>G
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3759
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22517
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13414
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5250
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12127
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12452
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1514
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5229
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val813Val
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

2-121745935-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745935
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745935
    reference: chr 2
allele count: 1
allele frequency: 1.602975121826109e-5
allele num: 62384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1544G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1544G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1493G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1461G>A
  hgvsp: ENST00000314490.11:c.1461G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2445G>A
  hgvsp: ENST00000361492.4:c.2445G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2445G>A
  hgvsp: ENST00000452319.1:c.2445G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1493G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1544G>A
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4842
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13471
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5347
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11096
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11151
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1371
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1699
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27616
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3508
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser815Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

2-121745935-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745935
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745935
    reference: chr 2
allele count: 1
allele frequency: 1.602975121826109e-5
allele num: 62384
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1544G>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2445G>C
  hgvsp: ENST00000361492.4:c.2445G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1544G>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1493G>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1544G>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1493G>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2445G>C
  hgvsp: ENST00000452319.1:c.2445G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1461G>C
  hgvsp: ENST00000314490.11:c.1461G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4842
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11096
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5347
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13471
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5313
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3059
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser815Ser
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

2-121745936-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745936
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745936
    reference: chr 2
allele count: 5
allele frequency: 7.99411633038084e-5
allele num: 62546
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1545G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1545G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1545G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2446G>T
  hgvsp: ENSP00000390436.1:p.Ala816Ser
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1462G>T
  hgvsp: ENSP00000312694.11:p.Ala488Ser
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1494G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2446G>T
  hgvsp: ENSP00000354586.4:p.Ala816Ser
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1494G>T
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22165
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4851
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13439
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5340
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11109
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1317
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1691
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala816Ser
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

2-121745947-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745947
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745947
    reference: chr 2
allele count: 1
allele frequency: 1.600922131147541e-5
allele num: 62464
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2457G>A
  hgvsp: ENST00000452319.1:c.2457G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2457G>A
  hgvsp: ENST00000361492.4:c.2457G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1556G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1473G>A
  hgvsp: ENST00000314490.11:c.1473G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1556G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1505G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1556G>A
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1505G>A
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21835
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10338
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5550
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5658
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13517
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26386
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1905
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1881
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val819Val
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

2-121745947-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745947
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745947
    reference: chr 2
allele count: 3
allele frequency: 4.802766393442623e-5
allele num: 62464
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1505G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1556G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1556G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1505G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1556G>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2457G>T
  hgvsp: ENST00000361492.4:c.2457G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2457G>T
  hgvsp: ENST00000452319.1:c.2457G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1473G>T
  hgvsp: ENST00000314490.11:c.1473G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21835
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5658
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13517
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5550
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10338
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1905
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3603
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5482
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26386
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Val819Val
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD

2-121745958-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745958
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745958
    reference: chr 2
allele count: 1
allele frequency: 1.545356204605162e-5
allele num: 64710
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2468C>T
  hgvsp: ENSP00000354586.4:p.Ser823Phe
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1567C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1516C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2468C>T
  hgvsp: ENSP00000390436.1:p.Ser823Phe
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1516C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1567C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1484C>T
  hgvsp: ENSP00000312694.11:p.Ser495Phe
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1567C>T
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5427
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20986
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12616
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13332
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2703
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3198
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2821
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 961
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser823Phe
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP

2-121745961-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745961
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745961
    reference: chr 2
allele count: 1
allele frequency: 1.546120782955564e-5
allele num: 64678
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1570C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1519C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1519C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1570C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1570C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2471C>T
  hgvsp: ENSP00000354586.4:p.Ser824Phe
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1487C>T
  hgvsp: ENSP00000312694.11:p.Ser496Phe
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2471C>T
  hgvsp: ENSP00000390436.1:p.Ser824Phe
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20785
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5477
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3832
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12570
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1205
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1525
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5578
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3181
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser824Phe
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

2-121745962-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745962
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745962
    reference: chr 2
allele count: 5
allele frequency: 7.736824188407143e-5
allele num: 64626
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1571C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1571C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2472C>T
  hgvsp: ENST00000452319.1:c.2472C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1488C>T
  hgvsp: ENST00000314490.11:c.1488C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1520C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2472C>T
  hgvsp: ENST00000361492.4:c.2472C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1571C>T
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1520C>T
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12536
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5459
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2872
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20665
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13766
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser824Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

2-121745969-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745969
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745969
    reference: chr 2
allele count: 1
allele frequency: 1.573910853689247e-5
allele num: 63536
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2479T>C
  hgvsp: ENSP00000390436.1:p.Ser827Pro
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1527T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1578T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1527T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1578T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1578T>C
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2479T>C
  hgvsp: ENSP00000354586.4:p.Ser827Pro
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1495T>C
  hgvsp: ENSP00000312694.11:p.Ser499Pro
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12905
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4704
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3269
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20243
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5523
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11736
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1995
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1652
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2003
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser827Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-121745974-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 121745974
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 121745974
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 64370
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000397488
  ensembl transcript: ENST00000445186
  gene symbol: GLI2
  hgvsc: ENST00000445186.1:c.*1583C>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000344473
  ensembl transcript: ENST00000341310
  gene symbol: GLI2
  hgvsc: ENST00000341310.6:c.*1532C>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000390436
  ensembl transcript: ENST00000452319
  gene symbol: GLI2
  hgvsc: ENST00000452319.1:c.2484C>G
  hgvsp: ENST00000452319.1:c.2484C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000403715
  ensembl transcript: ENST00000452692
  gene symbol: GLI2
  hgvsc: ENST00000452692.1:c.*1532C>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000400593
  ensembl transcript: ENST00000438299
  gene symbol: GLI2
  hgvsc: ENST00000438299.1:c.*1583C>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000312694
  ensembl transcript: ENST00000314490
  gene symbol: GLI2
  hgvsc: ENST00000314490.11:c.1500C>G
  hgvsp: ENST00000314490.11:c.1500C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000415773
  ensembl transcript: ENST00000437950
  gene symbol: GLI2
  hgvsc: ENST00000437950.1:c.*1583C>G
  variant of: http://identifiers.org/hgnc/4318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000074047
  ensembl protein: ENSP00000354586
  ensembl transcript: ENST00000361492
  gene symbol: GLI2
  hgvsc: ENST00000361492.4:c.2484C>G
  hgvsp: ENST00000361492.4:c.2484C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4318
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20455
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5659
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3702
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12698
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10562
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro828Pro
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1068
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 598
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41720
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1581
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2784
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8564
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2779
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.216101179618144e-4
allele num: 16446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.533958e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.931e0

FS
type: SiteQuality
SIO_000300: 1.4697e1

QD
type: SiteQuality
SIO_000300: 1.182e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.1e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.053e0

VQSLOD
type: SiteQuality
SIO_000300: -2.197e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1079
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1579
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2777
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2774
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41818
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.730103806228374e-4
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.052916578923618e-4
allele num: 66482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.825261620832319e-4
allele num: 16436
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.44e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.787e0

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-2

QD
type: SiteQuality
SIO_000300: 1.227e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.47e-2

DP
type: SiteQuality
SIO_000300: 1.534074e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.12e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

GenotypeQuality
all individuals: 85
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1076
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2771
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8538
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1579
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41789
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.217878455730118e-4
allele num: 16422
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.512906913773392e-5
allele num: 66476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.025e1

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 5.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.533472e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.08e0

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.59e-1

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2769
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1579
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1076
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2771
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.017209218364522e-5
allele num: 66476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.025e1

FS
type: SiteQuality
SIO_000300: 5.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.59e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.08e0

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.533472e6

GenotypeQuality
all individuals: 100
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2770
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2764
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1088
bin: 9.75e1
variant carriers: 20

GenotypeQuality
all individuals: 47
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41734
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 4
allele frequency: 3.861003861003861e-4
allele num: 10360
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 1.955887220533807e-4
allele num: 66466
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.313743637204998e-4
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.64e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.99e0

FS
type: SiteQuality
SIO_000300: 1.17e0

MQRankSum
type: SiteQuality
SIO_000300: -1.75e-1

DP
type: SiteQuality
SIO_000300: 1.533173e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.25e-1

QD
type: SiteQuality
SIO_000300: 1.098e1

MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeQuality
all individuals: 41734
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8523
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2770
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1578
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.087909411907951e-5
allele num: 16426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66466
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.963e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.99e0

QD
type: SiteQuality
SIO_000300: 1.098e1

FS
type: SiteQuality
SIO_000300: 1.17e0

MQRankSum
type: SiteQuality
SIO_000300: -1.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.64e-1

DP
type: SiteQuality
SIO_000300: 1.533173e6

GenotypeQuality
all individuals: 2760
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2755
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1192
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 80
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1570
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8500
bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.156871818602499e-4
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.048e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.45e0

MQRankSum
type: SiteQuality
SIO_000300: 3.38e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.92e-1

FS
type: SiteQuality
SIO_000300: 1.861e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.292e0

DP
type: SiteQuality
SIO_000300: 1.537568e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 127

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 7
allele frequency: 6.056411143796505e-4
allele num: 11558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

African
type: Population
allele count: 117
allele frequency: 1.129343629343629e-2
allele num: 10360
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.217433649866082e-4
allele num: 16428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504664459825459e-5
allele num: 66460
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.292e0

DP
type: SiteQuality
SIO_000300: 1.537568e6

FS
type: SiteQuality
SIO_000300: 1.861e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-2

QD
type: SiteQuality
SIO_000300: 1.048e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.45e0

MQRankSum
type: SiteQuality
SIO_000300: 3.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.92e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16358
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.656509695290859e-5
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.18e-1

FS
type: SiteQuality
SIO_000300: 1.141e0

DP
type: SiteQuality
SIO_000300: 1.527574e6

MQ
type: SiteQuality
SIO_000300: 5.892e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.964e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

QD
type: SiteQuality
SIO_000300: 1.083e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508159140952553e-5
allele num: 66306
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.688044952528579e-5
allele num: 10322
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e-1

DP
type: SiteQuality
SIO_000300: 1.515868e6

MQ
type: SiteQuality
SIO_000300: 5.977e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.39e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.83e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.12e-1

QD
type: SiteQuality
SIO_000300: 2.98e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 1552
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.162188809465122e-5
allele num: 16228
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508705229172324e-5
allele num: 66282
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.65e0

FS
type: SiteQuality
SIO_000300: 6.837e0

DP
type: SiteQuality
SIO_000300: 1.512936e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.18e-1

QD
type: SiteQuality
SIO_000300: 1.353e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 11

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66246
num of homozygotes: 0

East Asian
type: Population
allele count: 11
allele frequency: 1.27344292660338e-3
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16212
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.268e1

MQ
type: SiteQuality
SIO_000300: 5.965e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.505159e6

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.061e0

MQRankSum
type: SiteQuality
SIO_000300: -4.34e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.95e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 504
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157943492357573e-4
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66194
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10284
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.342e0

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.6e-1

FS
type: SiteQuality
SIO_000300: 2.874e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 1.497727e6

QD
type: SiteQuality
SIO_000300: 2.141e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66144
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South Asian
type: Population
allele count: 1
allele frequency: 6.208866261020738e-5
allele num: 16106
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
all individuals: 1310
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1521
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GenotypeQuality
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GenotypeQuality
all individuals: 1609
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GenotypeQuality
all individuals: 217
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GenotypeQuality
all individuals: 578
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GenotypeQuality
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GenotypeQuality
all individuals: 2574
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GenotypeQuality
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GenotypeQuality
all individuals: 2612
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GenotypeQuality
all individuals: 36204
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66084
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.864280387770321e-4
allele num: 16092
num of homozygotes: 0

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.46685e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.366e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 1818
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2420
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2915
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2557
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1672
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2907
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6574
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1069
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1512
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2539
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.320724065908564e-4
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10134
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65868
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15992
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.728e1

DP
type: SiteQuality
SIO_000300: 1.415426e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.959e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e0

FS
type: SiteQuality
SIO_000300: 2.1e0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

VQSLOD
type: SiteQuality
SIO_000300: -1.603e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.03e0

GenotypeQuality
all individuals: 165
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3558
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3603
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2537
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6358
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1073
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1196
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2418
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2483
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6344
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10076
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.28693574751666e-5
allele num: 15906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521931026085898e-5
allele num: 65706
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.133786848072562e-3
allele num: 882
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.40637e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.83e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

QD
type: SiteQuality
SIO_000300: 1.113e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.113e0

FS
type: SiteQuality
SIO_000300: 1.96e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

MQRankSum
type: SiteQuality
SIO_000300: 6.36e-1

GenotypeQuality
all individuals: 173
bin: 1.25e1
variant carriers: 114

GenotypeQuality
all individuals: 5148
bin: 6.25e1
variant carriers: 1796

GenotypeQuality
all individuals: 1449
bin: 3.75e1
variant carriers: 751

GenotypeQuality
all individuals: 1367
bin: 3.25e1
variant carriers: 501

GenotypeQuality
all individuals: 170
bin: 7.5e0
variant carriers: 77

GenotypeQuality
all individuals: 1758
bin: 9.25e1
variant carriers: 1724

GenotypeQuality
all individuals: 1061
bin: 5.75e1
variant carriers: 939

GenotypeQuality
all individuals: 33967
bin: 9.75e1
variant carriers: 33897

GenotypeQuality
all individuals: 1009
bin: 8.75e1
variant carriers: 976

GenotypeQuality
all individuals: 1445
bin: 4.75e1
variant carriers: 1160

GenotypeQuality
all individuals: 252
bin: 1.75e1
variant carriers: 171

GenotypeQuality
all individuals: 1296
bin: 7.25e1
variant carriers: 1148

GenotypeQuality
all individuals: 747
bin: 2.75e1
variant carriers: 263

European (Non-Finnish)
type: Population
allele count: 47612
allele frequency: 7.296634585913075e-1
allele num: 65252
num of homozygotes: 17279

Latino
type: Population
allele count: 6321
allele frequency: 5.632685795758332e-1
allele num: 11222
num of homozygotes: 1734

South Asian
type: Population
allele count: 8227
allele frequency: 5.203668564199874e-1
allele num: 15810
num of homozygotes: 2151

African
type: Population
allele count: 4255
allele frequency: 4.259259259259259e-1
allele num: 9990
num of homozygotes: 858

East Asian
type: Population
allele count: 4343
allele frequency: 5.155508072174739e-1
allele num: 8424
num of homozygotes: 1110

Other
type: Population
allele count: 584
allele frequency: 6.576576576576577e-1
allele num: 888
num of homozygotes: 185

European (Finnish)
type: Population
allele count: 4211
allele frequency: 6.701145767027371e-1
allele num: 6284
num of homozygotes: 1386

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-2

DP
type: SiteQuality
SIO_000300: 1.665618e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.69e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.8e0

QD
type: SiteQuality
SIO_000300: 2.758e1

GenotypeQuality
all individuals: 3149
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1297
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3063
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
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variant carriers: 0

GenotypeQuality
all individuals: 5972
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variant carriers: 0

GenotypeQuality
all individuals: 352
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variant carriers: 0

GenotypeQuality
all individuals: 5819
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variant carriers: 0

GenotypeQuality
all individuals: 626
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variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 426
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variant carriers: 0

GenotypeQuality
all individuals: 5387
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17324
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1701
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64444
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.765848490199541e-4
allele num: 11326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15242
num of homozygotes: 0

African
type: Population
allele count: 53
allele frequency: 5.398248115705846e-3
allele num: 9818
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6118
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.001e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.366229e6

MQRankSum
type: SiteQuality
SIO_000300: 1.29e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.63e0

QD
type: SiteQuality
SIO_000300: 1.351e1

GenotypeQuality
all individuals: 3308
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1417
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5124
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4507
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1589
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 494
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variant carriers: 0

GenotypeQuality
all individuals: 3285
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 620
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variant carriers: 0

GenotypeQuality
all individuals: 2169
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6522
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2124
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14954
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9712
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.56416192204217e-5
allele num: 63932
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11230
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6066
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.37e-1

QD
type: SiteQuality
SIO_000300: 3.01e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.78e-1

DP
type: SiteQuality
SIO_000300: 1.322737e6

MQ
type: SiteQuality
SIO_000300: 5.936e1

MQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.581e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.75e-1

GenotypeQuality
all individuals: 82
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10047
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 727
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 925
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3482
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 36096
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.129616426636246e-5
allele num: 14026
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63218
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9104
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.17e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.021e0

MQ
type: SiteQuality
SIO_000300: 5.915e1

VQSLOD
type: SiteQuality
SIO_000300: 1.92e-1

QD
type: SiteQuality
SIO_000300: 1.183e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.115e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e0

DP
type: SiteQuality
SIO_000300: 1.630712e6

GenotypeQuality
all individuals: 2133
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37039
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 212
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3932
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 753
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.58247879478415e-5
allele num: 63192
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8360
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9092
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.84e-1

FS
type: SiteQuality
SIO_000300: 7.91e-1

QD
type: SiteQuality
SIO_000300: 9.92e0

DP
type: SiteQuality
SIO_000300: 1.635527e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQ
type: SiteQuality
SIO_000300: 5.868e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.519e0

VQSLOD
type: SiteQuality
SIO_000300: -1.429e0

GenotypeQuality
all individuals: 535
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37080
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 694
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3950
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 171
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10052
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2383
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9086
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14144
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8360
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

FS
type: SiteQuality
SIO_000300: 8.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.002e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.77e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.57e0

VQSLOD
type: SiteQuality
SIO_000300: -3.038e-1

DP
type: SiteQuality
SIO_000300: 1.635603e6

GenotypeQuality
all individuals: 56
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3955
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2388
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9094
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.583481124904991e-5
allele num: 63152
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14146
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.493e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.94e-1

DP
type: SiteQuality
SIO_000300: 1.635854e6

VQSLOD
type: SiteQuality
SIO_000300: -1.411e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.096e0

MQRankSum
type: SiteQuality
SIO_000300: -2.64e-1

QD
type: SiteQuality
SIO_000300: 1.261e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.7e0

GenotypeQuality
all individuals: 60
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
all individuals: 2384
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10054
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9076
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8356
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.583832240489087e-5
allele num: 63138
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14162
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.206e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

DP
type: SiteQuality
SIO_000300: 1.636818e6

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

QD
type: SiteQuality
SIO_000300: 4.99e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.434e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.42e-1

MQ
type: SiteQuality
SIO_000300: 5.892e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2119
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9076
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63114
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.197318007662835e-4
allele num: 8352
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14182
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.516e0

MQ
type: SiteQuality
SIO_000300: 5.824e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.379999999999999e-1

FS
type: SiteQuality
SIO_000300: 2.087e0

DP
type: SiteQuality
SIO_000300: 1.638396e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.379999999999999e-1

QD
type: SiteQuality
SIO_000300: 4.69e0

VQSLOD
type: SiteQuality
SIO_000300: -2.575e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 202
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variant carriers: 4

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9080
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.111783753343658e-4
allele num: 14206
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.583681743316863e-5
allele num: 63144
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

FS
type: SiteQuality
SIO_000300: 7.036e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 8.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e0

QD
type: SiteQuality
SIO_000300: 1.291e1

VQSLOD
type: SiteQuality
SIO_000300: 5.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.05e-1

DP
type: SiteQuality
SIO_000300: 1.639227e6

GenotypeQuality
all individuals: 71
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 94
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9080
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.168768616515622e-5
allele num: 63116
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14248
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-1

QD
type: SiteQuality
SIO_000300: 9.82e0

FS
type: SiteQuality
SIO_000300: 1.699e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.79e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.719e0

DP
type: SiteQuality
SIO_000300: 1.638893e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.104240282685512e-4
allele num: 9056
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14274
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63032
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.148e0

DP
type: SiteQuality
SIO_000300: 1.637448e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.51e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

QD
type: SiteQuality
SIO_000300: 1.212e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 726
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63038
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9056
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14284
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.199904007679386e-4
allele num: 8334
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.649e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.151e0

FS
type: SiteQuality
SIO_000300: 3.135e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.93e-1

QD
type: SiteQuality
SIO_000300: 6.12e0

VQSLOD
type: SiteQuality
SIO_000300: -2.436e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.637758e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 30

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 16
allele frequency: 1.119977600447991e-3
allele num: 14286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8976
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 9.65929048120829e-4
allele num: 11388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.204819277108434e-3
allele num: 830
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.782248294331442e-5
allele num: 62732
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8328
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.97e0

FS
type: SiteQuality
SIO_000300: 1.296e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 2.41e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.15e1

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 112
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.390388855161837e-5
allele num: 62594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8916
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.31e-1

FS
type: SiteQuality
SIO_000300: 8.641e0

QD
type: SiteQuality
SIO_000300: 1.039e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.3e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.15e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.41e-1

DP
type: SiteQuality
SIO_000300: 1.606215e6

MQRankSum
type: SiteQuality
SIO_000300: 1.85e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 89
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GenotypeQuality
all individuals: 2177
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.599385835839038e-5
allele num: 62524
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14248
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11374
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.5e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e-1

FS
type: SiteQuality
SIO_000300: 2.155e0

ReadPosRankSum
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InbreedingCoeff
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SIO_000300: -9.0e-4

MQRankSum
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VQSLOD
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SIO_000300: -2.938e0

QD
type: SiteQuality
SIO_000300: 1.64e0

DP
type: SiteQuality
SIO_000300: 1.600821e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 15

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11358
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14214
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8868
num of homozygotes: 0

European (Non-Finnish)
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allele count: 16
allele frequency: 2.567723712928489e-4
allele num: 62312
num of homozygotes: 0

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.33e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.587272e6

MQRankSum
type: SiteQuality
SIO_000300: -2.0e-3

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.408e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.580000000000001e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.609321188322765e-5
allele num: 62138
num of homozygotes: 0

African
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allele count: 2
allele frequency: 2.26808800181447e-4
allele num: 8818
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8258
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14194
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11336
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.876e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.447e0

FS
type: SiteQuality
SIO_000300: 2.0691e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

QD
type: SiteQuality
SIO_000300: 1.15e1

VQSLOD
type: SiteQuality
SIO_000300: -2.89e0

MQRankSum
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SIO_000300: 1.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.58e-1

DP
type: SiteQuality
SIO_000300: 1.578091e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.26e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8780
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.835483300936562e-5
allele num: 11318
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14146
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61946
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8226
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.562883e6

VQSLOD
type: SiteQuality
SIO_000300: 5.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.672e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.92e-1

QD
type: SiteQuality
SIO_000300: 1.464e1

MQ
type: SiteQuality
SIO_000300: 5.942e1

FS
type: SiteQuality
SIO_000300: 8.087e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7958
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6144
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11102
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.337560910486617e-5
allele num: 59924
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13736
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.168e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.6e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

QD
type: SiteQuality
SIO_000300: 1.154e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.58e-1

FS
type: SiteQuality
SIO_000300: 5.372e0

DP
type: SiteQuality
SIO_000300: 1.468946e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 7.807620237351655e-5
allele num: 12808
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 708
num of homozygotes: 0

African
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allele count: 7
allele frequency: 9.610104338275673e-4
allele num: 7284
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7196
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5442
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 54388
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-3

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 6.2e-1

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.95e1

FS
type: SiteQuality
SIO_000300: 5.311e0

QD
type: SiteQuality
SIO_000300: 1.037e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12586
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.894011136785484e-5
allele num: 52798
num of homozygotes: 0

FS
type: SiteQuality
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MQ
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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DP
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 2.405002405002405e-4
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European (Non-Finnish)
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Latino
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African
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East Asian
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Other
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InbreedingCoeff
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MQ
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ReadPosRankSum
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FS
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MQRankSum
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VQSLOD
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DP
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QD
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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Other
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele num: 11394
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MQ
type: SiteQuality
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MQRankSum
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FS
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BaseQRankSum
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VQSLOD
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DP
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QD
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5848
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.794043774668102e-4
allele num: 5574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8688
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 44670
num of homozygotes: 0

MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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SIO_000300: 1.33e-1

VQSLOD
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QD
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FS
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5182
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 7.121830785300541e-5
allele num: 42124
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 1.201634222542658e-4
allele num: 8322
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
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QD
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ClippingRankSum
type: SiteQuality
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FS
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MQRankSum
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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MQ
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DP
type: SiteQuality
SIO_000300: 7.89629e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 8168
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 10932
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.983339944466482e-4
allele num: 5042
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 498
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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SIO_000300: 2.45e0

MQRankSum
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BaseQRankSum
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QD
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VQSLOD
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ReadPosRankSum
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DP
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FS
type: SiteQuality
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InbreedingCoeff
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MQ
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4826
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 2.575991756826378e-4
allele num: 7764
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39454
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.793e1

MQ
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -1.61e-2

ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -2.791e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 7704
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 39382
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3316
num of homozygotes: 0

African
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allele count: 1
allele frequency: 2.078137988362427e-4
allele num: 4812
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
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QD
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 7576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38738
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele num: 10462
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FS
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MQRankSum
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VQSLOD
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DP
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QD
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InbreedingCoeff
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BaseQRankSum
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MQ
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
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allele frequency: 2.55937755937756e-5
allele num: 39072
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
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allele frequency: 0.0e0
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Other
type: Population
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FS
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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DP
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MQRankSum
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VQSLOD
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MQ
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QD
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SIO_000300: 1.122e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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Latino
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East Asian
type: Population
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Other
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European (Non-Finnish)
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ClippingRankSum
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BaseQRankSum
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DP
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FS
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MQ
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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South Asian
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African
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num of homozygotes: 0

Latino
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European (Non-Finnish)
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num of homozygotes: 0

East Asian
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.049e1

DP
type: SiteQuality
SIO_000300: 6.91574e5

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.52e-2

FS
type: SiteQuality
SIO_000300: 5.348e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

GenotypeQuality
all individuals: 461
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4899
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28817
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3214
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.716284492809949e-5
allele num: 10292
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7404
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.92182e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

QD
type: SiteQuality
SIO_000300: 5.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

VQSLOD
type: SiteQuality
SIO_000300: -1.595e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.61e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.36e-1

FS
type: SiteQuality
SIO_000300: 2.836e0

GenotypeQuality
all individuals: 1725
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6922
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2962
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3976
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35980
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10034
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

FS
type: SiteQuality
SIO_000300: 1.906e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.69e-2

DP
type: SiteQuality
SIO_000300: 6.61099e5

VQSLOD
type: SiteQuality
SIO_000300: 2.6e-2

QD
type: SiteQuality
SIO_000300: 9.109999999999999e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6922
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35980
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2962
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3976
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.966115208291808e-5
allele num: 10034
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.109999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.906e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.69e-2

DP
type: SiteQuality
SIO_000300: 6.61099e5

VQSLOD
type: SiteQuality
SIO_000300: 2.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6212
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.025641025641026e-4
allele num: 9750
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2410
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3394
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3760
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32758
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.61e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.30309e5

ClippingRankSum
type: SiteQuality
SIO_000300: 5.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.477e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.79e-2

QD
type: SiteQuality
SIO_000300: 1.17e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.69e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3672
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6092
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32210
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3290
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.31785e5

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.185e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.87e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.76e-1

QD
type: SiteQuality
SIO_000300: 8.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.219e0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 361
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2118
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3516
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 9.264978381717109e-4
allele num: 3238
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6040
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31792
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

QD
type: SiteQuality
SIO_000300: 7.42e0

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.145e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.75e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.536e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.042e0

DP
type: SiteQuality
SIO_000300: 6.41001e5

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6066
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3294
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.137156481365291e-5
allele num: 31876
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.027326895418122e-4
allele num: 9734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2086
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.23e-1

DP
type: SiteQuality
SIO_000300: 6.50184e5

ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.69e-2

FS
type: SiteQuality
SIO_000300: 1.407e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 13
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2072
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6232
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.021867974657674e-4
allele num: 9786
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32360
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.59e-2

MQ
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.522e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.99e-1

DP
type: SiteQuality
SIO_000300: 6.64688e5

MQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3018
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2162
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 3776
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3902
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 9.992006394884092e-5
allele num: 10008
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 6860
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 436
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 34498
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.41e-2

FS
type: SiteQuality
SIO_000300: 1.1703e1

MQRankSum
type: SiteQuality
SIO_000300: -8.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.41e0

QD
type: SiteQuality
SIO_000300: 2.9e0

VQSLOD
type: SiteQuality
SIO_000300: -2.293e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

DP
type: SiteQuality
SIO_000300: 7.2246e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.749e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 1
allele frequency: 2.538071065989848e-4
allele num: 3940
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3816
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.887002713782551e-5
allele num: 34638
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2170
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 436
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10002
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 6872
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.18e-1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.965e0

BaseQRankSum
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InbreedingCoeff
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VQSLOD
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DP
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2162
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3824
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6946
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10028
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4008
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.867136877114513e-5
allele num: 34878
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.33e-2

QD
type: SiteQuality
SIO_000300: 6.34e0

FS
type: SiteQuality
SIO_000300: 1.853e0

DP
type: SiteQuality
SIO_000300: 7.26969e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.86e-1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.859921066178573e-5
allele num: 34966
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 3828
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4042
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7008
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2176
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9924
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.322e1

VQSLOD
type: SiteQuality
SIO_000300: -3.912e-1

FS
type: SiteQuality
SIO_000300: 1.725e0

MQRankSum
type: SiteQuality
SIO_000300: 1.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.43e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.22551e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9924
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3828
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4042
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2176
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7008
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.859921066178573e-5
allele num: 34966
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.63e0

QD
type: SiteQuality
SIO_000300: 1.322e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.912e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

FS
type: SiteQuality
SIO_000300: 1.725e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.22551e5

ClippingRankSum
type: SiteQuality
SIO_000300: -7.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.43e-2

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 438
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.007455168245013e-4
allele num: 9926
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7034
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 1.13960113960114e-4
allele num: 35100
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4062
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2138
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.23583e5

VQSLOD
type: SiteQuality
SIO_000300: 7.2e-1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -7.27e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7078
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 436
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.021033285685113e-4
allele num: 9794
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2152
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 35064
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
allele num: 3818
num of homozygotes: 0

MQRankSum
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SIO_000300: -3.8e-1

MQ
type: SiteQuality
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FS
type: SiteQuality
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DP
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VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.52e-2

BaseQRankSum
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ClippingRankSum
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SIO_000300: 2.44e-1

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 436
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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South Asian
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East Asian
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allele frequency: 7.27802037845706e-4
allele num: 4122
num of homozygotes: 0

ReadPosRankSum
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DP
type: SiteQuality
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MQ
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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South Asian
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allele num: 9874
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African
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Latino
type: Population
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Other
type: Population
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allele frequency: 0.0e0
allele num: 446
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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VQSLOD
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BaseQRankSum
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FS
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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QD
type: SiteQuality
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MQ
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 103
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26271
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13466
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 869
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3910
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2238
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.34698275862069e-4
allele num: 7424
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9846
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

DP
type: SiteQuality
SIO_000300: 7.55378e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.205e0

FS
type: SiteQuality
SIO_000300: 1.725e0

QD
type: SiteQuality
SIO_000300: 8.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.5e-2

MQ
type: SiteQuality
SIO_000300: 5.923e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.42e-2

GenotypeQuality
all individuals: 3149
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26228
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2780
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 871
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5608
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 23
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1498
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 4.508566275924256e-4
allele num: 2218
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3910
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9844
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.099323915791788e-4
allele num: 36386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4420
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.49e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.17e1

FS
type: SiteQuality
SIO_000300: 1.444e0

DP
type: SiteQuality
SIO_000300: 7.58724e5

ClippingRankSum
type: SiteQuality
SIO_000300: 4.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.965e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.11e-1

GenotypeQuality
all individuals: 5762
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1167
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1197
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24716
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3146
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1575
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10133
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2886
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9674
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2032
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.288329519450801e-4
allele num: 4370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7288
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.75e1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

QD
type: SiteQuality
SIO_000300: 6.73e0

DP
type: SiteQuality
SIO_000300: 7.51455e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.65e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.133e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1