4-515808-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 515808
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 515808
    reference: chr 4
allele count: 1
allele frequency: 1.325170284381543e-5
allele num: 75462
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424619
  ensembl transcript: ENST00000506402
  gene symbol: PIGG
  hgvsc: ENST00000506402.1:c.*99T>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1614+78T>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000507493
  gene symbol: PIGG
  hgvsc: ENST00000507493.1:n.482-8T>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000426002
  ensembl transcript: ENST00000503111
  gene symbol: PIGG
  hgvsc: ENST00000503111.1:c.*307T>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1215+78T>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000506898
  gene symbol: PIGG
  hgvsc: ENST00000506898.1:n.628T>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000421550
  ensembl transcript: ENST00000509768
  gene symbol: PIGG
  hgvsc: ENST00000509768.1:c.1425T>C
  hgvsp: ENST00000509768.1:c.1425T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1590+78T>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.52+78T>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1347+78T>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*229+78T>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000513679
  gene symbol: PIGG
  hgvsc: ENST00000513679.1:n.216T>C
  variant of: http://identifiers.org/hgnc/25985
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19735
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5876
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6502
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: n.482-8T>C
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

4-515813-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 515813
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 515813
    reference: chr 4
allele count: 1
allele frequency: 1.415748789534785e-5
allele num: 70634
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000421550
  ensembl transcript: ENST00000509768
  gene symbol: PIGG
  hgvsc: ENST00000509768.1:c.1430C>G
  hgvsp: ENSP00000421550.1:p.Pro477Arg
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000506898
  gene symbol: PIGG
  hgvsc: ENST00000506898.1:n.633C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.52+83C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1590+83C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000513679
  gene symbol: PIGG
  hgvsc: ENST00000513679.1:n.221C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1614+83C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000507493
  gene symbol: PIGG
  hgvsc: ENST00000507493.1:n.482-3C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424619
  ensembl transcript: ENST00000506402
  gene symbol: PIGG
  hgvsc: ENST00000506402.1:c.*104C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1215+83C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1347+83C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*229+83C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000426002
  ensembl transcript: ENST00000503111
  gene symbol: PIGG
  hgvsc: ENST00000503111.1:c.*312C>G
  variant of: http://identifiers.org/hgnc/25985
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5596
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3596
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2788
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20894
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro477Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD

4-515824-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 515824
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 515824
    reference: chr 4
allele count: 2
allele frequency: 3.320053120849933e-5
allele num: 60240
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000506898
  gene symbol: PIGG
  hgvsc: ENST00000506898.1:n.644T>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000507493
  gene symbol: PIGG
  hgvsc: ENST00000507493.1:n.490T>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1215+94T>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.52+94T>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000426002
  ensembl transcript: ENST00000503111
  gene symbol: PIGG
  hgvsc: ENST00000503111.1:c.*323T>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1347+94T>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000421550
  ensembl transcript: ENST00000509768
  gene symbol: PIGG
  hgvsc: ENST00000509768.1:c.1441T>C
  hgvsp: ENSP00000421550.1:p.Ter481ArgextTer91
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1590+94T>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424619
  ensembl transcript: ENST00000506402
  gene symbol: PIGG
  hgvsc: ENST00000506402.1:c.*115T>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000513679
  gene symbol: PIGG
  hgvsc: ENST00000513679.1:n.232T>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*229+94T>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1614+94T>C
  variant of: http://identifiers.org/hgnc/25985
canonical: false
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3104
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18627
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22984
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6958
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ter481ArgextTer91
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD

4-515834-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 515834
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 515834
    reference: chr 4
allele count: 3
allele frequency: 5.707762557077625e-5
allele num: 52560
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000421550
  ensembl transcript: ENST00000509768
  gene symbol: PIGG
  hgvsc: ENST00000509768.1:c.*8G>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424619
  ensembl transcript: ENST00000506402
  gene symbol: PIGG
  hgvsc: ENST00000506402.1:c.*125G>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000513679
  gene symbol: PIGG
  hgvsc: ENST00000513679.1:n.242G>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1347+104G>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1215+104G>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000426002
  ensembl transcript: ENST00000503111
  gene symbol: PIGG
  hgvsc: ENST00000503111.1:c.*333G>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000507493
  gene symbol: PIGG
  hgvsc: ENST00000507493.1:n.500G>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1614+104G>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.52+104G>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000506898
  gene symbol: PIGG
  hgvsc: ENST00000506898.1:n.654G>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1590+104G>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*229+104G>C
  variant of: http://identifiers.org/hgnc/25985
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23260
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10315
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2907
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

4-515839-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 515839
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 515839
    reference: chr 4
allele count: 1
allele frequency: 2.188375350140056e-5
allele num: 45696
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000426002
  ensembl transcript: ENST00000503111
  gene symbol: PIGG
  hgvsc: ENST00000503111.1:c.*338T>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000513679
  gene symbol: PIGG
  hgvsc: ENST00000513679.1:n.247T>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000507493
  gene symbol: PIGG
  hgvsc: ENST00000507493.1:n.505T>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.52+109T>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000421550
  ensembl transcript: ENST00000509768
  gene symbol: PIGG
  hgvsc: ENST00000509768.1:c.*13T>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424619
  ensembl transcript: ENST00000506402
  gene symbol: PIGG
  hgvsc: ENST00000506402.1:c.*130T>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1347+109T>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*229+109T>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1614+109T>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1215+109T>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1590+109T>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000506898
  gene symbol: PIGG
  hgvsc: ENST00000506898.1:n.659T>A
  variant of: http://identifiers.org/hgnc/25985
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15340
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13283
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22925
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3013
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/4-515844-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 515844
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 515844
    reference: chr 4
allele count: 7464
allele frequency: 1.740915240005598e-1
allele num: 42874
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1614+114C>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000507493
  gene symbol: PIGG
  hgvsc: ENST00000507493.1:n.510C>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1590+114C>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000513679
  gene symbol: PIGG
  hgvsc: ENST00000513679.1:n.252C>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424619
  ensembl transcript: ENST00000506402
  gene symbol: PIGG
  hgvsc: ENST00000506402.1:c.*135C>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000506898
  gene symbol: PIGG
  hgvsc: ENST00000506898.1:n.664C>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000426002
  ensembl transcript: ENST00000503111
  gene symbol: PIGG
  hgvsc: ENST00000503111.1:c.*343C>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.52+114C>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1215+114C>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000421550
  ensembl transcript: ENST00000509768
  gene symbol: PIGG
  hgvsc: ENST00000509768.1:c.*18C>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1347+114C>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*229+114C>A
  variant of: http://identifiers.org/hgnc/25985
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 3.25e1
  variant carriers: 196
genotype depth: GenotypeDepth
  all individuals: 14483
  bin: 1.25e1
  variant carriers: 3745
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23056
  bin: 7.5e0
  variant carriers: 4105
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 2.25e1
  variant carriers: 688
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 13963
  bin: 2.5e0
  variant carriers: 365
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 3.75e1
  variant carriers: 133
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 2.75e1
  variant carriers: 344
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 1.75e1
  variant carriers: 1510
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
num of homozygotes: 521
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

4-515844-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 515844
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 515844
    reference: chr 4
allele count: 2
allele frequency: 4.664831832812427e-5
allele num: 42874
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*229+114C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424619
  ensembl transcript: ENST00000506402
  gene symbol: PIGG
  hgvsc: ENST00000506402.1:c.*135C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1614+114C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.52+114C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1347+114C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000507493
  gene symbol: PIGG
  hgvsc: ENST00000507493.1:n.510C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000421550
  ensembl transcript: ENST00000509768
  gene symbol: PIGG
  hgvsc: ENST00000509768.1:c.*18C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000513679
  gene symbol: PIGG
  hgvsc: ENST00000513679.1:n.252C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1215+114C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000426002
  ensembl transcript: ENST00000503111
  gene symbol: PIGG
  hgvsc: ENST00000503111.1:c.*343C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000506898
  gene symbol: PIGG
  hgvsc: ENST00000506898.1:n.664C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1590+114C>T
  variant of: http://identifiers.org/hgnc/25985
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23056
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14483
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13963
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

4-515845-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 515845
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 515845
    reference: chr 4
allele count: 3
allele frequency: 8.606839568510444e-5
allele num: 34856
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000513679
  gene symbol: PIGG
  hgvsc: ENST00000513679.1:n.253G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000426002
  ensembl transcript: ENST00000503111
  gene symbol: PIGG
  hgvsc: ENST00000503111.1:c.*344G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1215+115G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000421550
  ensembl transcript: ENST00000509768
  gene symbol: PIGG
  hgvsc: ENST00000509768.1:c.*19G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1347+115G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*229+115G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000506898
  gene symbol: PIGG
  hgvsc: ENST00000506898.1:n.665G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424619
  ensembl transcript: ENST00000506402
  gene symbol: PIGG
  hgvsc: ENST00000506402.1:c.*136G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1590+115G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.52+115G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000507493
  gene symbol: PIGG
  hgvsc: ENST00000507493.1:n.511G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1614+115G>A
  variant of: http://identifiers.org/hgnc/25985
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18511
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12553
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22816
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

4-515853-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 515853
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 515853
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 30928
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000421550
  ensembl transcript: ENST00000509768
  gene symbol: PIGG
  hgvsc: ENST00000509768.1:c.*27A>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000426002
  ensembl transcript: ENST00000503111
  gene symbol: PIGG
  hgvsc: ENST00000503111.1:c.*352A>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.52+123A>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000507493
  gene symbol: PIGG
  hgvsc: ENST00000507493.1:n.519A>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1614+123A>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000506898
  gene symbol: PIGG
  hgvsc: ENST00000506898.1:n.673A>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1347+123A>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424619
  ensembl transcript: ENST00000506402
  gene symbol: PIGG
  hgvsc: ENST00000506402.1:c.*144A>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*229+123A>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000513679
  gene symbol: PIGG
  hgvsc: ENST00000513679.1:n.261A>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1590+123A>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1215+123A>T
  variant of: http://identifiers.org/hgnc/25985
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20606
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10925
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22751
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD

4-515854-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 515854
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 515854
    reference: chr 4
allele count: 1
allele frequency: 3.247385854387218e-5
allele num: 30794
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*229+124G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424619
  ensembl transcript: ENST00000506402
  gene symbol: PIGG
  hgvsc: ENST00000506402.1:c.*145G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000426002
  ensembl transcript: ENST00000503111
  gene symbol: PIGG
  hgvsc: ENST00000503111.1:c.*353G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1614+124G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000506898
  gene symbol: PIGG
  hgvsc: ENST00000506898.1:n.674G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1347+124G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000507493
  gene symbol: PIGG
  hgvsc: ENST00000507493.1:n.520G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000513679
  gene symbol: PIGG
  hgvsc: ENST00000513679.1:n.262G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1590+124G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000421550
  ensembl transcript: ENST00000509768
  gene symbol: PIGG
  hgvsc: ENST00000509768.1:c.*28G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1215+124G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.52+124G>A
  variant of: http://identifiers.org/hgnc/25985
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10862
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22767
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20672
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ

4-515854-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 515854
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 515854
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 30794
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.52+124G>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000507493
  gene symbol: PIGG
  hgvsc: ENST00000507493.1:n.520G>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000506898
  gene symbol: PIGG
  hgvsc: ENST00000506898.1:n.674G>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000426002
  ensembl transcript: ENST00000503111
  gene symbol: PIGG
  hgvsc: ENST00000503111.1:c.*353G>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1215+124G>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1590+124G>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1347+124G>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000513679
  gene symbol: PIGG
  hgvsc: ENST00000513679.1:n.262G>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000421550
  ensembl transcript: ENST00000509768
  gene symbol: PIGG
  hgvsc: ENST00000509768.1:c.*28G>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1614+124G>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*229+124G>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424619
  ensembl transcript: ENST00000506402
  gene symbol: PIGG
  hgvsc: ENST00000506402.1:c.*145G>C
  variant of: http://identifiers.org/hgnc/25985
canonical: false
consequence: 3' UTR
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22767
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10862
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20672
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

4-515858-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 515858
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 515858
    reference: chr 4
allele count: 2
allele frequency: 7.025925665706457e-5
allele num: 28466
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1215+128C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*229+128C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1590+128C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000513679
  gene symbol: PIGG
  hgvsc: ENST00000513679.1:n.266C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1614+128C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424619
  ensembl transcript: ENST00000506402
  gene symbol: PIGG
  hgvsc: ENST00000506402.1:c.*149C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.52+128C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000426002
  ensembl transcript: ENST00000503111
  gene symbol: PIGG
  hgvsc: ENST00000503111.1:c.*357C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000421550
  ensembl transcript: ENST00000509768
  gene symbol: PIGG
  hgvsc: ENST00000509768.1:c.*32C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000506898
  gene symbol: PIGG
  hgvsc: ENST00000506898.1:n.678C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1347+128C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000507493
  gene symbol: PIGG
  hgvsc: ENST00000507493.1:n.524C>G
  variant of: http://identifiers.org/hgnc/25985
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21644
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9928
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22650
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

4-515865-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 515865
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 515865
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 22616
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1215+135A>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000506898
  gene symbol: PIGG
  hgvsc: ENST00000506898.1:n.685A>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424619
  ensembl transcript: ENST00000506402
  gene symbol: PIGG
  hgvsc: ENST00000506402.1:c.*156A>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000426002
  ensembl transcript: ENST00000503111
  gene symbol: PIGG
  hgvsc: ENST00000503111.1:c.*364A>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1347+135A>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000421550
  ensembl transcript: ENST00000509768
  gene symbol: PIGG
  hgvsc: ENST00000509768.1:c.*39A>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1590+135A>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000507493
  gene symbol: PIGG
  hgvsc: ENST00000507493.1:n.531A>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.52+135A>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*229+135A>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1614+135A>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000513679
  gene symbol: PIGG
  hgvsc: ENST00000513679.1:n.273A>G
  variant of: http://identifiers.org/hgnc/25985
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23942
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7440
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2015
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ

4-515868-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 515868
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 515868
    reference: chr 4
allele count: 1
allele frequency: 4.396763981709462e-5
allele num: 22744
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424619
  ensembl transcript: ENST00000506402
  gene symbol: PIGG
  hgvsc: ENST00000506402.1:c.*159G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000507493
  gene symbol: PIGG
  hgvsc: ENST00000507493.1:n.534G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000421550
  ensembl transcript: ENST00000509768
  gene symbol: PIGG
  hgvsc: ENST00000509768.1:c.*42G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.52+138G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000426002
  ensembl transcript: ENST00000503111
  gene symbol: PIGG
  hgvsc: ENST00000503111.1:c.*367G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1215+138G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1347+138G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1590+138G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000506898
  gene symbol: PIGG
  hgvsc: ENST00000506898.1:n.688G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000513679
  gene symbol: PIGG
  hgvsc: ENST00000513679.1:n.276G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1614+138G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*229+138G>A
  variant of: http://identifiers.org/hgnc/25985
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23978
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22315
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7340
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

4-515870-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 515870
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 515870
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 22352
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.52+140G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000421550
  ensembl transcript: ENST00000509768
  gene symbol: PIGG
  hgvsc: ENST00000509768.1:c.*44G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*229+140G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000506898
  gene symbol: PIGG
  hgvsc: ENST00000506898.1:n.690G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1590+140G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1614+140G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000507493
  gene symbol: PIGG
  hgvsc: ENST00000507493.1:n.536G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000426002
  ensembl transcript: ENST00000503111
  gene symbol: PIGG
  hgvsc: ENST00000503111.1:c.*369G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424619
  ensembl transcript: ENST00000506402
  gene symbol: PIGG
  hgvsc: ENST00000506402.1:c.*161G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1215+140G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1347+140G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000513679
  gene symbol: PIGG
  hgvsc: ENST00000513679.1:n.278G>A
  variant of: http://identifiers.org/hgnc/25985
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22371
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24081
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

4-515874-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 515874
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 515874
    reference: chr 4
allele count: 2
allele frequency: 1.002104419280489e-4
allele num: 19958
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000421550
  ensembl transcript: ENST00000509768
  gene symbol: PIGG
  hgvsc: ENST00000509768.1:c.*48C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1614+144C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1347+144C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.52+144C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000513679
  gene symbol: PIGG
  hgvsc: ENST00000513679.1:n.282C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000426002
  ensembl transcript: ENST00000503111
  gene symbol: PIGG
  hgvsc: ENST00000503111.1:c.*373C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1215+144C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000507493
  gene symbol: PIGG
  hgvsc: ENST00000507493.1:n.540C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424619
  ensembl transcript: ENST00000506402
  gene symbol: PIGG
  hgvsc: ENST00000506402.1:c.*165C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000506898
  gene symbol: PIGG
  hgvsc: ENST00000506898.1:n.694C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1590+144C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*229+144C>T
  variant of: http://identifiers.org/hgnc/25985
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24408
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6659
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22373
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ

4-517198-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517198
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517198
    reference: chr 4
allele count: 16659
allele frequency: 1.504850860869722e-1
allele num: 110702
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.53-50G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1348-50G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1615-50G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1591-50G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*230-50G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1216-50G>A
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 7.5e0
  variant carriers: 529
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 1.75e1
  variant carriers: 227
genotype depth: GenotypeDepth
  all individuals: 10361
  bin: 3.25e1
  variant carriers: 115
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 2.5e0
  variant carriers: 141
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 1.25e1
  variant carriers: 242
genotype depth: GenotypeDepth
  all individuals: 13643
  bin: 9.75e1
  variant carriers: 13503
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 3.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 4.25e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 21099
  bin: 2.75e1
  variant carriers: 199
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.25e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.75e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 5821
  bin: 2.25e1
  variant carriers: 255
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 8.75e1
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.75e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 1189
  bin: 7.5e0
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 5.25e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 1.75e1
  variant carriers: 61
genotype quality: GenotypeQuality
  all individuals: 1608
  bin: 7.25e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 3.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 4.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 3.25e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 1.25e1
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 2.75e1
  variant carriers: 69
num of homozygotes: 1521
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum

4-517204-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517204
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517204
    reference: chr 4
allele count: 3
allele frequency: 2.708950372029184e-5
allele num: 110744
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1615-44C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1348-44C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1591-44C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*230-44C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1216-44C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.53-44C>T
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13335
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21120
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5879
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2935
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10393
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1621
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1602
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27797
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7381
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1750
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

4-517205-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517205
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517205
    reference: chr 4
allele count: 3
allele frequency: 2.708167834187911e-5
allele num: 110776
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1216-43G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1615-43G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1348-43G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*230-43G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.53-43G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1591-43G>A
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13333
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21153
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10393
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27972
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7394
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1637
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1415
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14508
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

4-517207-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517207
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517207
    reference: chr 4
allele count: 1
allele frequency: 9.02380479705463e-6
allele num: 110818
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1615-41T>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1348-41T>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1591-41T>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.53-41T>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1216-41T>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*230-41T>C
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 21164
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6036
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3056
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13331
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1632
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1624
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28046
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7401
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1417
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14508
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS

4-517209-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517209
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517209
    reference: chr 4
allele count: 2
allele frequency: 1.804239963915201e-5
allele num: 110850
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1615-39T>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.53-39T>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1216-39T>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1591-39T>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1348-39T>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*230-39T>G
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21178
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13330
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
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genotype depth: GenotypeDepth
  all individuals: 79
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
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genotype quality: GenotypeQuality
  all individuals: 1599
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 547
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
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genotype quality: GenotypeQuality
  all individuals: 79
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
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genotype quality: GenotypeQuality
  all individuals: 173
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7402
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1418
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

4-517215-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517215
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517215
    reference: chr 4
allele count: 7
allele frequency: 6.30744278248333e-5
allele num: 110980
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1591-33C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*230-33C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1216-33C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1348-33C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1615-33C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.53-33C>T
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6232
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10410
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21232
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13328
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  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2883
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7416
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1417
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1412
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

4-517216-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517216
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517216
    reference: chr 4
allele count: 21
allele frequency: 1.89018901890189e-4
allele num: 111100
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*230-32G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.53-32G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1348-32G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1591-32G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1216-32G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1615-32G>A
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6264
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21253
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13324
  bin: 9.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 10414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1350
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28354
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1415
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3026
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

4-517229-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517229
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517229
    reference: chr 4
allele count: 3
allele frequency: 2.683171150543789e-5
allele num: 111808
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1591-19T>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1216-19T>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1348-19T>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.53-19T>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*230-19T>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1615-19T>C
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3950
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13318
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21320
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6580
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1418
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3780
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

4-517230-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517230
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517230
    reference: chr 4
allele count: 1
allele frequency: 8.934474563550918e-6
allele num: 111926
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*230-18G>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1615-18G>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1216-18G>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1591-18G>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1348-18G>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.53-18G>T
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3970
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6615
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21333
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 13318
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3833
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 182
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 427
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genotype quality: GenotypeQuality
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/4-517237-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517237
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517237
    reference: chr 4
allele count: 2
allele frequency: 1.775820429038216e-5
allele num: 112624
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1348-11C>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1591-11C>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1615-11C>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*230-11C>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1216-11C>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.53-11C>A
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6832
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13317
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3871
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21372
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10435
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7461
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1423
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28929
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: DP

4-517237-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517237
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517237
    reference: chr 4
allele count: 3
allele frequency: 2.663730643557324e-5
allele num: 112624
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.53-11C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1348-11C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1615-11C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*230-11C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1216-11C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1591-11C>G
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6832
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13317
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21372
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3871
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10435
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1645
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7461
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

4-517238-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517238
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517238
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 112724
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1216-10C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*230-10C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.53-10C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1591-10C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1348-10C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1615-10C>G
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 6878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21371
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10441
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13315
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3833
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3774
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28950
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1421
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14492
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

4-517240-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517240
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517240
    reference: chr 4
allele count: 1
allele frequency: 8.852377748663291e-6
allele num: 112964
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1348-8T>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1591-8T>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1615-8T>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*230-8T>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.53-8T>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1216-8T>G
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21381
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13315
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3765
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7470
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
hgvs: c.1615-8T>G
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD

4-517245-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517245
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517245
    reference: chr 4
allele count: 1
allele frequency: 8.8073135932078e-6
allele num: 113542
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*230-3C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.53-3C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1591-3C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1348-3C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1615-3C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1216-3C>G
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21421
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3560
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13315
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3577
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29238
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
hgvs: c.1615-3C>G
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP

4-517245-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517245
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517245
    reference: chr 4
allele count: 1
allele frequency: 8.8073135932078e-6
allele num: 113542
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*230-3C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1348-3C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1216-3C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1615-3C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.53-3C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1591-3C>T
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13315
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21421
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3560
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1423
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1648
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
hgvs: c.1615-3C>T
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/4-517250-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517250
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517250
    reference: chr 4
allele count: 2
allele frequency: 1.749689430126153e-5
allele num: 114306
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.55C>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*232C>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1593C>A
  hgvsp: ENSP00000311750.5:p.Asn531Lys
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1617C>A
  hgvsp: ENSP00000415203.2:p.Asn539Lys
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1350C>A
  hgvsp: ENSP00000424800.1:p.Asn450Lys
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1218C>A
  hgvsp: ENSP00000372494.4:p.Asn406Lys
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7505
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10484
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13315
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3309
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14492
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn539Lys
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/4-517251-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517251
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517251
    reference: chr 4
allele count: 4
allele frequency: 3.490401396160558e-5
allele num: 114600
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*233C>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1618C>A
  hgvsp: ENSP00000415203.2:p.Pro540Thr
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.56C>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1594C>A
  hgvsp: ENSP00000311750.5:p.Pro532Thr
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1219C>A
  hgvsp: ENSP00000372494.4:p.Pro407Thr
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1351C>A
  hgvsp: ENSP00000424800.1:p.Pro451Thr
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13314
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10489
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7583
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1439
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1659
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro540Thr
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ

4-517251-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517251
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517251
    reference: chr 4
allele count: 1
allele frequency: 8.726003490401396e-6
allele num: 114600
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1594C>G
  hgvsp: ENSP00000311750.5:p.Pro532Ala
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1351C>G
  hgvsp: ENSP00000424800.1:p.Pro451Ala
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1219C>G
  hgvsp: ENSP00000372494.4:p.Pro407Ala
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*233C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1618C>G
  hgvsp: ENSP00000415203.2:p.Pro540Ala
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.56C>G
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13314
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10489
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7504
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3206
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29543
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro540Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

4-517253-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517253
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517253
    reference: chr 4
allele count: 2
allele frequency: 1.737438320939607e-5
allele num: 115112
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1221C>T
  hgvsp: ENST00000383028.4:c.1221C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1353C>T
  hgvsp: ENST00000504346.1:c.1353C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*235C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1596C>T
  hgvsp: ENST00000310340.5:c.1596C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1620C>T
  hgvsp: ENST00000453061.2:c.1620C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.58C>T
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10484
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2952
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21593
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7790
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13313
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3041
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1439
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 1666
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro540Pro
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

4-517254-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517254
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517254
    reference: chr 4
allele count: 1
allele frequency: 8.665060742075802e-6
allele num: 115406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1354A>G
  hgvsp: ENSP00000424800.1:p.Met452Val
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1621A>G
  hgvsp: ENSP00000415203.2:p.Met541Val
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.59A>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*236A>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1597A>G
  hgvsp: ENSP00000311750.5:p.Met533Val
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1222A>G
  hgvsp: ENSP00000372494.4:p.Met408Val
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21627
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7928
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13312
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10486
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1666
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2962
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1443
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Met541Val
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

4-517261-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517261
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517261
    reference: chr 4
allele count: 114
allele frequency: 9.778524986704636e-4
allele num: 116582
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1229C>G
  hgvsp: ENSP00000372494.4:p.Pro410Arg
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1361C>G
  hgvsp: ENSP00000424800.1:p.Pro454Arg
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1604C>G
  hgvsp: ENSP00000311750.5:p.Pro535Arg
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1628C>G
  hgvsp: ENSP00000415203.2:p.Pro543Arg
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.66C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*243C>G
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8370
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10505
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21809
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13313
  bin: 9.75e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14511
  bin: 9.75e1
  variant carriers: 110
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7615
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30590
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2406
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro543Arg
num of homozygotes: 2
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

4-517263-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517263
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517263
    reference: chr 4
allele count: 2
allele frequency: 1.709547824600393e-5
allele num: 116990
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1606A>G
  hgvsp: ENSP00000311750.5:p.Ser536Gly
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.68A>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1231A>G
  hgvsp: ENSP00000372494.4:p.Ser411Gly
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1630A>G
  hgvsp: ENSP00000415203.2:p.Ser544Gly
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*245A>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1363A>G
  hgvsp: ENSP00000424800.1:p.Ser455Gly
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10509
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21834
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8582
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13310
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2242
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14492
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 30844
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1463
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser544Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD

4-517268-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517268
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517268
    reference: chr 4
allele count: 1
allele frequency: 8.485218748939348e-6
allele num: 117852
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*250A>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1368A>T
  hgvsp: ENST00000504346.1:c.1368A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1635A>T
  hgvsp: ENST00000453061.2:c.1635A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1611A>T
  hgvsp: ENST00000310340.5:c.1611A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1236A>T
  hgvsp: ENST00000383028.4:c.1236A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.73A>T
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9067
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13309
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21969
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7694
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1691
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1806
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14490
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser545Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP

4-517273-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517273
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517273
    reference: chr 4
allele count: 5
allele frequency: 4.223329673114283e-5
allele num: 118390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.78G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1616G>A
  hgvsp: ENSP00000311750.5:p.Trp539Ter
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1640G>A
  hgvsp: ENSP00000415203.2:p.Trp547Ter
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1373G>A
  hgvsp: ENSP00000424800.1:p.Trp458Ter
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1241G>A
  hgvsp: ENSP00000372494.4:p.Trp414Ter
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*255G>A
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9297
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22124
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10536
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13308
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7750
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1707
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Trp547Ter
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

4-517273-GGTCAGAGCTAGACCTTCTTATTCT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517273
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517249
    reference: chr 4
allele count: 1
allele frequency: 8.446659346228567e-6
allele num: 118390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsp: ENSP00000424800.1:p.Ser459_Leu466del
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsp: ENSP00000415203.2:p.Ser548_Leu555del
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsp: ENSP00000311750.5:p.Ser540_Leu547del
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsp: ENSP00000372494.4:p.Ser415_Leu422del
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10536
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22124
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13308
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9297
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7750
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31708
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1522
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser548_Leu555del
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: GGTCAGAGCTAGACCTTCTTATTCT
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

4-517280-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517280
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517280
    reference: chr 4
allele count: 1
allele frequency: 8.370862701109976e-6
allele num: 119462
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1248G>C
  hgvsp: ENSP00000372494.4:p.Glu416Asp
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1380G>C
  hgvsp: ENSP00000424800.1:p.Glu460Asp
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1647G>C
  hgvsp: ENSP00000415203.2:p.Glu549Asp
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1623G>C
  hgvsp: ENSP00000311750.5:p.Glu541Asp
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.85G>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*262G>C
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22360
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9812
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13305
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14489
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1730
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu549Asp
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

4-517286-CCTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517286
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517283
    reference: chr 4
allele count: 2
allele frequency: 1.663616702711695e-5
allele num: 120220
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.95_97delCTT
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1657_1659delCTT
  hgvsp: ENSP00000415203.2:p.Leu553del
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1633_1635delCTT
  hgvsp: ENSP00000311750.5:p.Leu545del
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*272_*274delCTT
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1390_1392delCTT
  hgvsp: ENSP00000424800.1:p.Leu464del
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1258_1260delCTT
  hgvsp: ENSP00000372494.4:p.Leu420del
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10152
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10633
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13304
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22559
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1528
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1734
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32897
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu553del
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: CCTT
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum

4-517298-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517298
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517298
    reference: chr 4
allele count: 1
allele frequency: 8.271572260455268e-6
allele num: 120896
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*280G>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1398G>C
  hgvsp: ENST00000504346.1:c.1398G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.103G>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1641G>C
  hgvsp: ENST00000310340.5:c.1641G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1665G>C
  hgvsp: ENST00000453061.2:c.1665G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1266G>C
  hgvsp: ENST00000383028.4:c.1266G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22746
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13302
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14490
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33374
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu555Leu
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD

4-517299-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517299
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517299
    reference: chr 4
allele count: 1
allele frequency: 8.268562923763849e-6
allele num: 120940
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1642T>C
  hgvsp: ENST00000310340.5:c.1642T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1666T>C
  hgvsp: ENST00000453061.2:c.1666T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*281T>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.104T>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1399T>C
  hgvsp: ENST00000504346.1:c.1399T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1267T>C
  hgvsp: ENST00000383028.4:c.1267T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13302
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10413
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22755
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7949
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1760
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1563
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu556Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

4-517305-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517305
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517305
    reference: chr 4
allele count: 1
allele frequency: 8.258729477057249e-6
allele num: 121084
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1273A>G
  hgvsp: ENSP00000372494.4:p.Thr425Ala
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1648A>G
  hgvsp: ENSP00000311750.5:p.Thr550Ala
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1672A>G
  hgvsp: ENSP00000415203.2:p.Thr558Ala
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*287A>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.110A>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1405A>G
  hgvsp: ENSP00000424800.1:p.Thr469Ala
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13301
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33297
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr558Ala
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

4-517306-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517306
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517306
    reference: chr 4
allele count: 2
allele frequency: 1.65169133192389e-5
allele num: 121088
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1649C>T
  hgvsp: ENSP00000311750.5:p.Thr550Met
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1673C>T
  hgvsp: ENSP00000415203.2:p.Thr558Met
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1274C>T
  hgvsp: ENSP00000372494.4:p.Thr425Met
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1406C>T
  hgvsp: ENSP00000424800.1:p.Thr469Met
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*288C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.111C>T
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13300
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10283
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1774
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33285
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7950
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr558Met
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

4-517307-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517307
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517307
    reference: chr 4
allele count: 8
allele frequency: 6.603602265035577e-5
allele num: 121146
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.112G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1275G>A
  hgvsp: ENST00000383028.4:c.1275G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1674G>A
  hgvsp: ENST00000453061.2:c.1674G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1650G>A
  hgvsp: ENST00000310340.5:c.1650G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*289G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1407G>A
  hgvsp: ENST00000504346.1:c.1407G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22867
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13298
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10809
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10311
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33401
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14496
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1581
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr558Thr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum

4-517309-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517309
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517309
    reference: chr 4
allele count: 3
allele frequency: 2.475778632379884e-5
allele num: 121174
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*291C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1652C>T
  hgvsp: ENSP00000311750.5:p.Ala551Val
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1277C>T
  hgvsp: ENSP00000372494.4:p.Ala426Val
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1409C>T
  hgvsp: ENSP00000424800.1:p.Ala470Val
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.114C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1676C>T
  hgvsp: ENSP00000415203.2:p.Ala559Val
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000511247
  gene symbol: PIGG
  hgvsc: ENST00000511247.1:n.1C>T
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10279
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13297
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10829
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33362
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1577
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7981
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala559Val
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

4-517310-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517310
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517310
    reference: chr 4
allele count: 6
allele frequency: 4.948616861587186e-5
allele num: 121246
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000511247
  gene symbol: PIGG
  hgvsc: ENST00000511247.1:n.2G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.115G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*292G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1278G>A
  hgvsp: ENST00000383028.4:c.1278G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1410G>A
  hgvsp: ENST00000504346.1:c.1410G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1677G>A
  hgvsp: ENST00000453061.2:c.1677G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1653G>A
  hgvsp: ENST00000310340.5:c.1653G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13295
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10312
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22892
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1795
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14499
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1581
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala559Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

4-517316-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517316
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517316
    reference: chr 4
allele count: 2
allele frequency: 1.648750247312537e-5
allele num: 121304
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1683C>T
  hgvsp: ENST00000453061.2:c.1683C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1659C>T
  hgvsp: ENST00000310340.5:c.1659C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1284C>T
  hgvsp: ENST00000383028.4:c.1284C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.121C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*298C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1416C>T
  hgvsp: ENST00000504346.1:c.1416C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000511247
  gene symbol: PIGG
  hgvsc: ENST00000511247.1:n.8C>T
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22927
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10859
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13289
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1593
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33530
  bin: 6.25e1
  variant carriers: 0
hgvs: p.His561His
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: FS

4-517317-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517317
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517317
    reference: chr 4
allele count: 1
allele frequency: 8.243751236562685e-6
allele num: 121304
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.122G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*299G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1417G>A
  hgvsp: ENSP00000424800.1:p.Val473Ile
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1285G>A
  hgvsp: ENSP00000372494.4:p.Val429Ile
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1660G>A
  hgvsp: ENSP00000311750.5:p.Val554Ile
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000511247
  gene symbol: PIGG
  hgvsc: ENST00000511247.1:n.9G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1684G>A
  hgvsp: ENSP00000415203.2:p.Val562Ile
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13288
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10862
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10311
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14505
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1591
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val562Ile
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

4-517331-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517331
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517331
    reference: chr 4
allele count: 5
allele frequency: 4.12044896411913e-5
allele num: 121346
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1698C>T
  hgvsp: ENST00000453061.2:c.1698C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*313C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000511247
  gene symbol: PIGG
  hgvsc: ENST00000511247.1:n.23C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1299C>T
  hgvsp: ENST00000383028.4:c.1299C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1431C>T
  hgvsp: ENST00000504346.1:c.1431C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1674C>T
  hgvsp: ENST00000310340.5:c.1674C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.136C>T
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10879
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22954
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13287
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1808
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly566Gly
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

4-517332-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517332
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517332
    reference: chr 4
allele count: 22
allele frequency: 1.812967663249497e-4
allele num: 121348
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1675G>A
  hgvsp: ENSP00000311750.5:p.Ala559Thr
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1300G>A
  hgvsp: ENSP00000372494.4:p.Ala434Thr
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1699G>A
  hgvsp: ENSP00000415203.2:p.Ala567Thr
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1432G>A
  hgvsp: ENSP00000424800.1:p.Ala478Thr
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*314G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.137G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000511247
  gene symbol: PIGG
  hgvsc: ENST00000511247.1:n.24G>A
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22953
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10881
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10324
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13289
  bin: 9.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1812
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala567Thr
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

4-517343-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517343
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517343
    reference: chr 4
allele count: 2
allele frequency: 1.647935137272997e-5
allele num: 121364
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1686C>T
  hgvsp: ENST00000310340.5:c.1686C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000511247
  gene symbol: PIGG
  hgvsc: ENST00000511247.1:n.35C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1443C>T
  hgvsp: ENST00000504346.1:c.1443C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*325C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1311C>T
  hgvsp: ENST00000383028.4:c.1311C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1710C>T
  hgvsp: ENST00000453061.2:c.1710C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.148C>T
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10326
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13272
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22988
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Phe570Phe
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum

4-517344-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517344
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517344
    reference: chr 4
allele count: 2
allele frequency: 1.647907980818351e-5
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.149G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000511247
  gene symbol: PIGG
  hgvsc: ENST00000511247.1:n.36G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*326G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1312G>A
  hgvsp: ENSP00000372494.4:p.Val438Met
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1444G>A
  hgvsp: ENSP00000424800.1:p.Val482Met
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1687G>A
  hgvsp: ENSP00000311750.5:p.Val563Met
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1711G>A
  hgvsp: ENSP00000415203.2:p.Val571Met
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10325
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13271
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1815
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val571Met
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum

4-517344-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517344
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517344
    reference: chr 4
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1711G>C
  hgvsp: ENSP00000415203.2:p.Val571Leu
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000511247
  gene symbol: PIGG
  hgvsc: ENST00000511247.1:n.36G>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*326G>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1312G>C
  hgvsp: ENSP00000372494.4:p.Val438Leu
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1687G>C
  hgvsp: ENSP00000311750.5:p.Val563Leu
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1444G>C
  hgvsp: ENSP00000424800.1:p.Val482Leu
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.149G>C
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10325
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13271
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33628
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val571Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

4-517344-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517344
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517344
    reference: chr 4
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.149G>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1711G>T
  hgvsp: ENSP00000415203.2:p.Val571Leu
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1444G>T
  hgvsp: ENSP00000424800.1:p.Val482Leu
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1312G>T
  hgvsp: ENSP00000372494.4:p.Val438Leu
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*326G>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000511247
  gene symbol: PIGG
  hgvsc: ENST00000511247.1:n.36G>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1687G>T
  hgvsp: ENSP00000311750.5:p.Val563Leu
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10325
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13271
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14493
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val571Leu
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

4-517351-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517351
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517351
    reference: chr 4
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1451A>G
  hgvsp: ENSP00000424800.1:p.Glu484Gly
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.156A>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1694A>G
  hgvsp: ENSP00000311750.5:p.Glu565Gly
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1319A>G
  hgvsp: ENSP00000372494.4:p.Glu440Gly
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1718A>G
  hgvsp: ENSP00000415203.2:p.Glu573Gly
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000511247
  gene symbol: PIGG
  hgvsc: ENST00000511247.1:n.43A>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*333A>G
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22989
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13269
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu573Gly
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum

4-517363-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517363
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517363
    reference: chr 4
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1706C>G
  hgvsp: ENSP00000311750.5:p.Thr569Ser
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1331C>G
  hgvsp: ENSP00000372494.4:p.Thr444Ser
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1463C>G
  hgvsp: ENSP00000424800.1:p.Thr488Ser
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1730C>G
  hgvsp: ENSP00000415203.2:p.Thr577Ser
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000511247
  gene symbol: PIGG
  hgvsc: ENST00000511247.1:n.55C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.168C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*345C>G
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13268
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10337
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14492
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1598
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1817
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr577Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

4-517376-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517376
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517376
    reference: chr 4
allele count: 18419
allele frequency: 1.517515818613235e-1
allele num: 121376
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1719T>C
  hgvsp: ENST00000310340.5:c.1719T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1344T>C
  hgvsp: ENST00000383028.4:c.1344T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1476T>C
  hgvsp: ENST00000504346.1:c.1476T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1743T>C
  hgvsp: ENST00000453061.2:c.1743T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*358T>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000511247
  gene symbol: PIGG
  hgvsc: ENST00000511247.1:n.68T>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.181T>C
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22350
  bin: 2.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 144
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 167
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 4.25e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 3.75e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 206
genotype depth: GenotypeDepth
  all individuals: 8901
  bin: 2.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.75e1
  variant carriers: 256
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14839
  bin: 9.75e1
  variant carriers: 14788
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 126
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.25e1
  variant carriers: 222
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 10585
  bin: 3.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 9.25e1
  variant carriers: 280
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1407
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7645
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 1
hgvs: p.Leu581Leu
num of homozygotes: 1680
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/4-517383-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517383
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517382
    reference: chr 4
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1729delC
  hgvsp: ENSP00000311750.5:p.Leu577CysfsTer3
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1486delC
  hgvsp: ENSP00000424800.1:p.Leu496CysfsTer3
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1753delC
  hgvsp: ENSP00000415203.2:p.Leu585CysfsTer3
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000511247
  gene symbol: PIGG
  hgvsc: ENST00000511247.1:n.78delC
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1354delC
  hgvsp: ENSP00000372494.4:p.Leu452CysfsTer3
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.191delC
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*368delC
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10649
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8939
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22421
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9447
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16597
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7704
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu585CysfsTer3
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: AC
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum

4-517386-C-CTTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517386
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517389
    reference: chr 4
allele count: 2
allele frequency: 1.647555028337947e-5
allele num: 121392
alternate allele: CTTG
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1487_1488insTGT
  hgvsp: ENSP00000424800.1:p.Leu496_Cys497insVal
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*369_*370insTGT
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1754_1755insTGT
  hgvsp: ENSP00000415203.2:p.Leu585_Cys586insVal
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000511247
  gene symbol: PIGG
  hgvsc: ENST00000511247.1:n.79_80insTGT
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1355_1356insTGT
  hgvsp: ENSP00000372494.4:p.Leu452_Cys453insVal
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.192_193insTGT
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1730_1731insTGT
  hgvsp: ENSP00000311750.5:p.Leu577_Cys578insVal
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10649
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22424
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9448
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16598
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1691
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu585_Cys586insVal
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

4-517396-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517396
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517396
    reference: chr 4
allele count: 3
allele frequency: 2.471413978317461e-5
allele num: 121388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000511247
  gene symbol: PIGG
  hgvsc: ENST00000511247.1:n.88C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1496C>G
  hgvsp: ENSP00000424800.1:p.Ala499Gly
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*378C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.201C>G
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1763C>G
  hgvsp: ENSP00000415203.2:p.Ala588Gly
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1739C>G
  hgvsp: ENSP00000311750.5:p.Ala580Gly
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1364C>G
  hgvsp: ENSP00000372494.4:p.Ala455Gly
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22424
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10648
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9447
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1473
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7708
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala588Gly
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

4-517400-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517400
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517400
    reference: chr 4
allele count: 4
allele frequency: 3.295164346321773e-5
allele num: 121390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1500G>C
  hgvsp: ENST00000504346.1:c.1500G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*382G>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1767G>C
  hgvsp: ENST00000453061.2:c.1767G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1368G>C
  hgvsp: ENST00000383028.4:c.1368G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1743G>C
  hgvsp: ENST00000310340.5:c.1743G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.205G>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000511247
  gene symbol: PIGG
  hgvsc: ENST00000511247.1:n.92G>C
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8942
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10648
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9446
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32175
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7706
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1474
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu589Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/4-517405-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517405
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517405
    reference: chr 4
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1748A>C
  hgvsp: ENSP00000311750.5:p.Gln583Pro
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000511247
  gene symbol: PIGG
  hgvsc: ENST00000511247.1:n.97A>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*387A>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.210A>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1373A>C
  hgvsp: ENSP00000372494.4:p.Gln458Pro
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1505A>C
  hgvsp: ENSP00000424800.1:p.Gln502Pro
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1772A>C
  hgvsp: ENSP00000415203.2:p.Gln591Pro
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10647
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8943
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22424
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9445
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gln591Pro
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/4-517406-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517406
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517406
    reference: chr 4
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*388A>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1506A>C
  hgvsp: ENSP00000424800.1:p.Gln502His
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1374A>C
  hgvsp: ENSP00000372494.4:p.Gln458His
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1749A>C
  hgvsp: ENSP00000311750.5:p.Gln583His
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.211A>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000511247
  gene symbol: PIGG
  hgvsc: ENST00000511247.1:n.98A>C
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1773A>C
  hgvsp: ENSP00000415203.2:p.Gln591His
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10647
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8935
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22424
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9444
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7693
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1470
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32159
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gln591His
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP

4-517411-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517411
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517411
    reference: chr 4
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1754C>T
  hgvsp: ENSP00000311750.5:p.Thr585Ile
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*393C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1379C>T
  hgvsp: ENSP00000372494.4:p.Thr460Ile
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1778C>T
  hgvsp: ENSP00000415203.2:p.Thr593Ile
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.216C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000511247
  gene symbol: PIGG
  hgvsc: ENST00000511247.1:n.103C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1511C>T
  hgvsp: ENSP00000424800.1:p.Thr504Ile
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22423
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10645
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9443
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8939
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7698
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr593Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

4-517428-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517428
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517428
    reference: chr 4
allele count: 1
allele frequency: 8.240354664864776e-6
allele num: 121354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1771C>T
  hgvsp: ENST00000310340.5:c.1771C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1528C>T
  hgvsp: ENST00000504346.1:c.1528C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1795C>T
  hgvsp: ENST00000453061.2:c.1795C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000511247
  gene symbol: PIGG
  hgvsc: ENST00000511247.1:n.120C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.233C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*410C>T
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1396C>T
  hgvsp: ENST00000383028.4:c.1396C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10642
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8926
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9442
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7700
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1467
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1689
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu599Leu
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

4-517436-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517436
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517436
    reference: chr 4
allele count: 3
allele frequency: 2.47222863170386e-5
allele num: 121348
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1536T>A
  hgvsp: ENSP00000424800.1:p.Asp512Glu
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1803T>A
  hgvsp: ENSP00000415203.2:p.Asp601Glu
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.241T>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1779T>A
  hgvsp: ENSP00000311750.5:p.Asp593Glu
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*418T>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1404T>A
  hgvsp: ENSP00000372494.4:p.Asp468Glu
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000511247
  gene symbol: PIGG
  hgvsc: ENST00000511247.1:n.128T>A
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8922
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9443
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10644
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1688
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp601Glu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

4-517437-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 517437
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 517437
    reference: chr 4
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000424800
  ensembl transcript: ENST00000504346
  gene symbol: PIGG
  hgvsc: ENST00000504346.1:c.1537G>A
  hgvsp: ENSP00000424800.1:p.Asp513Asn
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000511247
  gene symbol: PIGG
  hgvsc: ENST00000511247.1:n.129G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000372494
  ensembl transcript: ENST00000383028
  gene symbol: PIGG
  hgvsc: ENST00000383028.4:c.1405G>A
  hgvsp: ENSP00000372494.4:p.Asp469Asn
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000415203
  ensembl transcript: ENST00000453061
  gene symbol: PIGG
  hgvsc: ENST00000453061.2:c.1804G>A
  hgvsp: ENSP00000415203.2:p.Asp602Asn
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000311750
  ensembl transcript: ENST00000310340
  gene symbol: PIGG
  hgvsc: ENST00000310340.5:c.1780G>A
  hgvsp: ENSP00000311750.5:p.Asp594Asn
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000174227
  ensembl protein: ENSP00000296306
  ensembl transcript: ENST00000296306
  gene symbol: PIGG
  hgvsc: ENST00000296306.7:c.*419G>A
  variant of: http://identifiers.org/hgnc/25985
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000174227
  ensembl transcript: ENST00000508562
  gene symbol: PIGG
  hgvsc: ENST00000508562.1:n.242G>A
  variant of: http://identifiers.org/hgnc/25985
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22403
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9441
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10645
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8920
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32133
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1688
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1465
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asp602Asn
num of homozygotes: 0
reference allele: G

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 54
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10886
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3099
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1392
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33217
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2890
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1219
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2727
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1129
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12260
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5732
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.482799525504152e-4
allele num: 6744
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3690
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4786
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41636
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.1e-3

DP
type: SiteQuality
SIO_000300: 8.56583e5

QD
type: SiteQuality
SIO_000300: 1.593e1

FS
type: SiteQuality
SIO_000300: 2.292e0

MQRankSum
type: SiteQuality
SIO_000300: 8.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.58e-1

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3151
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33741
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 7.25e1
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GenotypeQuality
all individuals: 1224
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 2.5e0
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4068
bin: 7.5e0
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9511
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 2727
bin: 3.25e1
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GenotypeQuality
all individuals: 247
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.571222873598683e-5
allele num: 38892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4320
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6374
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

QD
type: SiteQuality
SIO_000300: 1.348e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.95e-1

DP
type: SiteQuality
SIO_000300: 8.12098e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.19e-2

FS
type: SiteQuality
SIO_000300: 4.456e0

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

GenotypeDepth
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4072
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33158
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.702332469455757e-4
allele num: 5402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10768
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2810
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.483e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e0

FS
type: SiteQuality
SIO_000300: 4.615e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.73e-2

MQ
type: SiteQuality
SIO_000300: 5.928e1

DP
type: SiteQuality
SIO_000300: 7.12529e5

QD
type: SiteQuality
SIO_000300: 1.187e1

GenotypeDepth
all individuals: 726
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 240
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11494
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 1194
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 123
bin: 5.25e1
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GenotypeQuality
all individuals: 138
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GenotypeQuality
all individuals: 2232
bin: 1.25e1
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GenotypeQuality
all individuals: 700
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 4.75e1
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GenotypeQuality
all individuals: 737
bin: 9.75e1
variant carriers: 4

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2920
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.016287954956767e-4
allele num: 9946
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3182
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28974
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.37e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 3.233e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.159e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.76e-1

DP
type: SiteQuality
SIO_000300: 6.4479e5

GenotypeDepth
all individuals: 14
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14538
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 81
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variant carriers: 0

GenotypeQuality
all individuals: 390
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variant carriers: 0

GenotypeQuality
all individuals: 418
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variant carriers: 0

GenotypeQuality
all individuals: 2790
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variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 5.25e1
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GenotypeQuality
all individuals: 234
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GenotypeQuality
all individuals: 1332
bin: 3.75e1
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GenotypeQuality
all individuals: 4508
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
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GenotypeQuality
all individuals: 574
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GenotypeQuality
all individuals: 2220
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3173
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GenotypeQuality
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GenotypeQuality
all individuals: 616
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GenotypeQuality
all individuals: 137
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GenotypeQuality
all individuals: 24248
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variant carriers: 0

GenotypeQuality
all individuals: 183
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variant carriers: 0

GenotypeQuality
all individuals: 3101
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 4.163197335553705e-4
allele num: 2402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4150
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1996
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24928
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.83e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -5.91e-1

QD
type: SiteQuality
SIO_000300: 1.418e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.461e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.31e-1

DP
type: SiteQuality
SIO_000300: 5.97222e5

GenotypeDepth
all individuals: 245
bin: 4.25e1
variant carriers: 100

GenotypeQuality
all individuals: 2107
bin: 1.75e1
variant carriers: 344

GenotypeQuality
all individuals: 494
bin: 6.75e1
variant carriers: 119

GenotypeQuality
all individuals: 2844
bin: 2.5e0
variant carriers: 39

GenotypeQuality
all individuals: 364
bin: 4.75e1
variant carriers: 293

GenotypeQuality
all individuals: 413
bin: 5.25e1
variant carriers: 339

GenotypeQuality
all individuals: 546
bin: 8.75e1
variant carriers: 493

GenotypeQuality
all individuals: 529
bin: 9.25e1
variant carriers: 442

GenotypeQuality
all individuals: 1871
bin: 6.25e1
variant carriers: 94

GenotypeQuality
all individuals: 7108
bin: 9.75e1
variant carriers: 6785

GenotypeQuality
all individuals: 667
bin: 3.75e1
variant carriers: 134

GenotypeQuality
all individuals: 448
bin: 7.75e1
variant carriers: 309

GenotypeQuality
all individuals: 14029
bin: 7.5e0
variant carriers: 124

GenotypeQuality
all individuals: 2308
bin: 1.25e1
variant carriers: 173

GenotypeQuality
all individuals: 1588
bin: 3.25e1
variant carriers: 171

GenotypeQuality
all individuals: 271
bin: 4.25e1
variant carriers: 152

GenotypeQuality
all individuals: 20558
bin: 2.25e1
variant carriers: 402

GenotypeQuality
all individuals: 258
bin: 5.75e1
variant carriers: 225

GenotypeQuality
all individuals: 2071
bin: 2.75e1
variant carriers: 185

GenotypeQuality
all individuals: 551
bin: 8.25e1
variant carriers: 445

GenotypeQuality
all individuals: 322
bin: 7.25e1
variant carriers: 203

African
type: Population
allele count: 1391
allele frequency: 3.444774640911342e-1
allele num: 4038
num of homozygotes: 201

South Asian
type: Population
allele count: 1215
allele frequency: 1.357845328565042e-1
allele num: 8948
num of homozygotes: 72

European (Finnish)
type: Population
allele count: 336
allele frequency: 1.879194630872483e-1
allele num: 1788
num of homozygotes: 20

Latino
type: Population
allele count: 224
allele frequency: 1.017257039055404e-1
allele num: 2202
num of homozygotes: 6

Other
type: Population
allele count: 56
allele frequency: 1.530054644808743e-1
allele num: 366
num of homozygotes: 7

East Asian
type: Population
allele count: 597
allele frequency: 2.63459841129744e-1
allele num: 2266
num of homozygotes: 56

European (Non-Finnish)
type: Population
allele count: 3645
allele frequency: 1.56666380125505e-1
allele num: 23266
num of homozygotes: 159

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.93e-2

DP
type: SiteQuality
SIO_000300: 5.76348e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

QD
type: SiteQuality
SIO_000300: 1.721e1

VQSLOD
type: SiteQuality
SIO_000300: 6.03e0

GenotypeDepth
all individuals: 97
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1588
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2308
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GenotypeQuality
all individuals: 2107
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2844
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GenotypeQuality
all individuals: 413
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GenotypeQuality
all individuals: 14029
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variant carriers: 0

GenotypeQuality
all individuals: 546
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variant carriers: 0

GenotypeQuality
all individuals: 667
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GenotypeQuality
all individuals: 364
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GenotypeQuality
all individuals: 322
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GenotypeQuality
all individuals: 20558
bin: 2.25e1
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GenotypeQuality
all individuals: 258
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GenotypeQuality
all individuals: 1871
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GenotypeQuality
all individuals: 551
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GenotypeQuality
all individuals: 7108
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 529
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GenotypeQuality
all individuals: 271
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2071
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2202
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4038
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.117568171658471e-4
allele num: 8948
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2266
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.298117424568039e-5
allele num: 23266
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1788
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.03e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e0

QD
type: SiteQuality
SIO_000300: 1.721e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.93e-2

DP
type: SiteQuality
SIO_000300: 5.76348e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeDepth
all individuals: 205
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2445
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GenotypeQuality
all individuals: 191
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GenotypeQuality
all individuals: 469
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variant carriers: 3

GenotypeQuality
all individuals: 19294
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3325
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GenotypeQuality
all individuals: 1967
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GenotypeQuality
all individuals: 467
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GenotypeQuality
all individuals: 97
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GenotypeQuality
all individuals: 3456
bin: 1.75e1
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GenotypeQuality
all individuals: 1880
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GenotypeQuality
all individuals: 122
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GenotypeQuality
all individuals: 181
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GenotypeQuality
all individuals: 146
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GenotypeQuality
all individuals: 171
bin: 7.25e1
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GenotypeQuality
all individuals: 67
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23200
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8118
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3032
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.59846547314578e-4
allele num: 18768
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 304
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.81e-1

QD
type: SiteQuality
SIO_000300: 2.427e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.122e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.007e0

DP
type: SiteQuality
SIO_000300: 5.10022e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.98e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1384
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 272
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1424
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7648
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

FS
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VQSLOD
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BaseQRankSum
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SIO_000300: -7.27e-1

ReadPosRankSum
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DP
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InbreedingCoeff
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SIO_000300: -4.06e-2

ClippingRankSum
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SIO_000300: 7.42e-1

MQ
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SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.565e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1080
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 6.108735491753207e-5
allele num: 16370
num of homozygotes: 0

East Asian
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South Asian
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ClippingRankSum
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FS
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QD
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MQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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SIO_000300: 3.4e-2

BaseQRankSum
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SIO_000300: -7.31e-1

DP
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SIO_000300: 4.7459e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 1080
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
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InbreedingCoeff
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MQRankSum
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FS
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ReadPosRankSum
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BaseQRankSum
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MQ
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QD
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ClippingRankSum
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VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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Other
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European (Non-Finnish)
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allele num: 14998
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FS
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VQSLOD
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DP
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InbreedingCoeff
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MQRankSum
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QD
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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East Asian
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Other
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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InbreedingCoeff
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QD
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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DP
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ReadPosRankSum
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FS
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MQRankSum
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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Other
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East Asian
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South Asian
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African
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European (Finnish)
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DP
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FS
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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MQ
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MQRankSum
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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East Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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African
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European (Non-Finnish)
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ClippingRankSum
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FS
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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VQSLOD
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QD
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MQ
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DP
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InbreedingCoeff
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5532
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7599
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.938360147315371e-4
allele num: 10318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.36e-2

DP
type: SiteQuality
SIO_000300: 4.13242e5

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.133e0

QD
type: SiteQuality
SIO_000300: 1.332e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 550
bin: 8.25e1
variant carriers: 66

GenotypeQuality
all individuals: 27523
bin: 6.25e1
variant carriers: 70

GenotypeQuality
all individuals: 7281
bin: 6.75e1
variant carriers: 30

GenotypeQuality
all individuals: 1105
bin: 2.25e1
variant carriers: 43

GenotypeQuality
all individuals: 1411
bin: 7.75e1
variant carriers: 53

GenotypeQuality
all individuals: 15490
bin: 9.75e1
variant carriers: 15028

GenotypeQuality
all individuals: 178
bin: 9.25e1
variant carriers: 45

European (Non-Finnish)
type: Population
allele count: 7768
allele frequency: 1.219083490269931e-1
allele num: 63720
num of homozygotes: 433

South Asian
type: Population
allele count: 1499
allele frequency: 1.579224610198061e-1
allele num: 9492
num of homozygotes: 117

Other
type: Population
allele count: 101
allele frequency: 1.278481012658228e-1
allele num: 790
num of homozygotes: 10

Latino
type: Population
allele count: 1033
allele frequency: 8.998257839721255e-2
allele num: 11480
num of homozygotes: 49

East Asian
type: Population
allele count: 1803
allele frequency: 2.11768851303735e-1
allele num: 8514
num of homozygotes: 209

African
type: Population
allele count: 3537
allele frequency: 3.504756242568371e-1
allele num: 10092
num of homozygotes: 643

European (Finnish)
type: Population
allele count: 918
allele frequency: 1.387964922890838e-1
allele num: 6614
num of homozygotes: 60

MQ
type: SiteQuality
SIO_000300: 5.974e1

DP
type: SiteQuality
SIO_000300: 4.078903e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.976e0

QD
type: SiteQuality
SIO_000300: 1.561e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.94e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.95e0

MQRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

GenotypeQuality
all individuals: 829
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14511
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1418
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 142
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10082
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.741856819369448e-4
allele num: 11482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.568676664365941e-5
allele num: 63748
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

QD
type: SiteQuality
SIO_000300: 1.375e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.453924e6

VQSLOD
type: SiteQuality
SIO_000300: 2.61e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

MQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.923e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

GenotypeQuality
all individuals: 389
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1620
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2029
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10088
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.136959658698789e-5
allele num: 63756
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.172332942555686e-4
allele num: 8530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

DP
type: SiteQuality
SIO_000300: 3.454962e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.89e0

MQ
type: SiteQuality
SIO_000300: 5.946e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.86e-1

FS
type: SiteQuality
SIO_000300: 3.453e0

VQSLOD
type: SiteQuality
SIO_000300: 7.8e-2

QD
type: SiteQuality
SIO_000300: 1.784e1

GenotypeQuality
all individuals: 2202
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.567840456555141e-5
allele num: 63782
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10090
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9524
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.27e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.421e0

QD
type: SiteQuality
SIO_000300: 1.897e1

DP
type: SiteQuality
SIO_000300: 3.455703e6

BaseQRankSum
type: SiteQuality
SIO_000300: 9.720000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.511e0

FS
type: SiteQuality
SIO_000300: 2.2593e1

GenotypeQuality
all individuals: 455
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2340
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1625
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28057
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.134894510799712e-5
allele num: 63798
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10086
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.266e0

VQSLOD
type: SiteQuality
SIO_000300: 3.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.119999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-1

QD
type: SiteQuality
SIO_000300: 1.596e1

DP
type: SiteQuality
SIO_000300: 3.45656e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

GenotypeQuality
all individuals: 75
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28289
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14505
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 176
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1627
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 4
allele frequency: 3.483106931382794e-4
allele num: 11484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10102
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.039068994181214e-4
allele num: 9624
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.133421069123268e-5
allele num: 63828
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

MQ
type: SiteQuality
SIO_000300: 5.969e1

QD
type: SiteQuality
SIO_000300: 1.324e1

FS
type: SiteQuality
SIO_000300: 2.47e0

MQRankSum
type: SiteQuality
SIO_000300: -1.82e-1

DP
type: SiteQuality
SIO_000300: 3.461092e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.33e-1

GenotypeQuality
all individuals: 7422
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1630
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14502
bin: 9.75e1
variant carriers: 21

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.096113494722996e-4
allele num: 63862
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.256281407035176e-3
allele num: 796
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10104
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9706
num of homozygotes: 0

East Asian
type: Population
allele count: 13
allele frequency: 1.522961574507966e-3
allele num: 8536
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.6e-2

MQ
type: SiteQuality
SIO_000300: 5.962e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.2e0

DP
type: SiteQuality
SIO_000300: 3.462577e6

QD
type: SiteQuality
SIO_000300: 1.229e1

GenotypeQuality
all individuals: 538
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14495
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 28644
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1642
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7443
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10152
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.873617693522907e-5
allele num: 10128
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.12217053295451e-5
allele num: 64058
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.99e0

FS
type: SiteQuality
SIO_000300: 6.25e-1

QD
type: SiteQuality
SIO_000300: 1.389e1

DP
type: SiteQuality
SIO_000300: 3.470166e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

MQ
type: SiteQuality
SIO_000300: 5.923e1

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.16e-1

GenotypeQuality
all individuals: 7449
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1642
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28736
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10130
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64090
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.697164724299878e-5
allele num: 11498
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.839e0

FS
type: SiteQuality
SIO_000300: 3.296e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

DP
type: SiteQuality
SIO_000300: 3.471212e6

VQSLOD
type: SiteQuality
SIO_000300: 2.68e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.55e-1

QD
type: SiteQuality
SIO_000300: 1.071e1

GenotypeQuality
all individuals: 84
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1645
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14493
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 175
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3800
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10150
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10712
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.738525730180807e-4
allele num: 11504
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.99e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

QD
type: SiteQuality
SIO_000300: 1.318e1

DP
type: SiteQuality
SIO_000300: 3.477448e6

GenotypeQuality
all individuals: 3800
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14493
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1423
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10150
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.498950314905528e-4
allele num: 8574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10712
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64260
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.99e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.25e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

MQRankSum
type: SiteQuality
SIO_000300: 7.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.63e-1

DP
type: SiteQuality
SIO_000300: 3.477448e6

QD
type: SiteQuality
SIO_000300: 1.318e1

GenotypeQuality
all individuals: 435
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7463
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10152
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64294
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10766
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.3e-3

QD
type: SiteQuality
SIO_000300: 1.309e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.154e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

MQRankSum
type: SiteQuality
SIO_000300: 1.47e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.193e0

DP
type: SiteQuality
SIO_000300: 3.477456e6

GenotypeQuality
all individuals: 1646
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1420
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29022
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10148
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.692628650904033e-5
allele num: 11504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10922
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64372
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.088e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

FS
type: SiteQuality
SIO_000300: 1.163e0

DP
type: SiteQuality
SIO_000300: 3.479243e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.04e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

MQRankSum
type: SiteQuality
SIO_000300: -4.12e-1

QD
type: SiteQuality
SIO_000300: 1.343e1

GenotypeQuality
all individuals: 1648
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 264
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14493
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1423
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.823182711198428e-5
allele num: 10180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.956e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

QD
type: SiteQuality
SIO_000300: 1.158e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.73e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.46e-1

FS
type: SiteQuality
SIO_000300: 4.629e0

DP
type: SiteQuality
SIO_000300: 3.485067e6

GenotypeQuality
all individuals: 88
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 542
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variant carriers: 0

GenotypeQuality
all individuals: 3577
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variant carriers: 0

GenotypeQuality
all individuals: 29238
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14493
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 177
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7468
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.549858962834382e-5
allele num: 64522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10180
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

QD
type: SiteQuality
SIO_000300: 1.158e1

DP
type: SiteQuality
SIO_000300: 3.485067e6

MQ
type: SiteQuality
SIO_000300: 5.956e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.73e-1

FS
type: SiteQuality
SIO_000300: 4.629e0

MQRankSum
type: SiteQuality
SIO_000300: 8.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

GenotypeQuality
all individuals: 177
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1433
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variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1657
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variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7489
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29425
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variant carriers: 0

GenotypeQuality
all individuals: 178
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variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.090234857849197e-5
allele num: 64720
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11794
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.820000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.931e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.185e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

DP
type: SiteQuality
SIO_000300: 3.492134e6

QD
type: SiteQuality
SIO_000300: 1.039e1

GenotypeQuality
all individuals: 14492
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 542
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7504
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.782821365681862e-5
allele num: 10222
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12002
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.630773030377871e-5
allele num: 64784
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.19e-1

FS
type: SiteQuality
SIO_000300: 5.46e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.54e-1

DP
type: SiteQuality
SIO_000300: 3.49395e6

VQSLOD
type: SiteQuality
SIO_000300: 7.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

QD
type: SiteQuality
SIO_000300: 9.35e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1659
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160900859066636e-4
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10222
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12002
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 9.35e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.48e-1

DP
type: SiteQuality
SIO_000300: 3.49395e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.35e-1

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64914
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.952362358453729e-4
allele num: 10244
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12344
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.07e-1

DP
type: SiteQuality
SIO_000300: 3.497845e6

VQSLOD
type: SiteQuality
SIO_000300: 2.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.494e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.6e-2

QD
type: SiteQuality
SIO_000300: 1.135e1

FS
type: SiteQuality
SIO_000300: 5.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.955e1

MQRankSum
type: SiteQuality
SIO_000300: -8.9e-2

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 115
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GenotypeQuality
all individuals: 371
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.538745614574998e-5
allele num: 64988
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.94e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.091e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.906e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 3.499606e6

VQSLOD
type: SiteQuality
SIO_000300: -1.253e0

FS
type: SiteQuality
SIO_000300: 4.094e0

MQRankSum
type: SiteQuality
SIO_000300: -6.99e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.92e0

GenotypeQuality
all individuals: 235
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1682
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1457
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 8.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

African
type: Population
allele count: 82
allele frequency: 7.973551147413457e-3
allele num: 10284
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531159087429184e-5
allele num: 65310
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.73190162798753e-4
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 29
allele frequency: 2.175217521752175e-3
allele num: 13332
num of homozygotes: 1

MQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

DP
type: SiteQuality
SIO_000300: 3.521974e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.54e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.585e0

FS
type: SiteQuality
SIO_000300: 5.22e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-1

QD
type: SiteQuality
SIO_000300: 1.219e1

GenotypeQuality
all individuals: 116
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7651
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1690
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65428
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.471020888496617e-4
allele num: 13596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.29e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 2.764e0

DP
type: SiteQuality
SIO_000300: 3.509388e6

QD
type: SiteQuality
SIO_000300: 9.56e0

VQSLOD
type: SiteQuality
SIO_000300: 5.92e-1

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31473
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1464
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14200
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65640
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.29e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.258e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.62e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.93e-1

FS
type: SiteQuality
SIO_000300: 5.23e-1

DP
type: SiteQuality
SIO_000300: 3.517971e6

GenotypeQuality
all individuals: 1470
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1522
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14493
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 561
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31708
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.081800212863008e-5
allele num: 65770
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.667440061871617e-5
allele num: 10344
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e-1

QD
type: SiteQuality
SIO_000300: 8.859999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: 4.91e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.273e0

MQRankSum
type: SiteQuality
SIO_000300: 4.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

DP
type: SiteQuality
SIO_000300: 3.524437e6

GenotypeQuality
all individuals: 1470
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1707
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14493
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 85
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65770
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.857769853243725e-5
allele num: 14582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.273e0

VQSLOD
type: SiteQuality
SIO_000300: 4.91e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

MQ
type: SiteQuality
SIO_000300: 5.957e1

MQRankSum
type: SiteQuality
SIO_000300: 4.3e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.859999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.63e-1

DP
type: SiteQuality
SIO_000300: 3.524437e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e-1

GenotypeQuality
all individuals: 63
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7825
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32454
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1510
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 7.5e0
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512721991952319e-5
allele num: 66106
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.83e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

VQSLOD
type: SiteQuality
SIO_000300: 7.92e-1

MQ
type: SiteQuality
SIO_000300: 5.988e1

QD
type: SiteQuality
SIO_000300: 1.228e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.122e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.79e-1

DP
type: SiteQuality
SIO_000300: 3.535172e6

GenotypeQuality
all individuals: 82
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14490
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 624
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7872
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15792
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.01559060341968e-5
allele num: 66322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.66e-1

MQ
type: SiteQuality
SIO_000300: 5.841e1

QD
type: SiteQuality
SIO_000300: 1.786e1

FS
type: SiteQuality
SIO_000300: 5.49e-1

DP
type: SiteQuality
SIO_000300: 3.544264e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.1e-2

GenotypeQuality
all individuals: 7947
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1761
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.148548942449582e-5
allele num: 16264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.45e0

MQRankSum
type: SiteQuality
SIO_000300: 2.38e0

DP
type: SiteQuality
SIO_000300: 3.552131e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

FS
type: SiteQuality
SIO_000300: 6.322e0

VQSLOD
type: SiteQuality
SIO_000300: -1.946e0

QD
type: SiteQuality
SIO_000300: 1.582e1

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14491
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33407
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503126503126503e-5
allele num: 66528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16286
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.492e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.44e0

MQRankSum
type: SiteQuality
SIO_000300: -1.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.11e-1

QD
type: SiteQuality
SIO_000300: 1.471e1

DP
type: SiteQuality
SIO_000300: 3.552525e6

GenotypeQuality
all individuals: 58
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1772
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14490
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7955
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1566
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.103515625e-5
allele num: 16384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.386e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.85e0

MQ
type: SiteQuality
SIO_000300: 5.935e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.669e0

FS
type: SiteQuality
SIO_000300: 8.438000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.235e0

DP
type: SiteQuality
SIO_000300: 3.55495e6

GenotypeQuality
all individuals: 14489
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 598
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.004266057802079e-5
allele num: 66572
num of homozygotes: 0

Other
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South Asian
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allele frequency: 0.0e0
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East Asian
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InbreedingCoeff
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VQSLOD
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MQRankSum
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QD
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FS
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BaseQRankSum
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ReadPosRankSum
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SIO_000300: 7.86e-1

MQ
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SIO_000300: 5.984e1

ClippingRankSum
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele num: 906
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East Asian
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South Asian
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allele frequency: 2.435460301997078e-4
allele num: 16424
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Latino
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allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

African
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allele frequency: 1.924187030979411e-4
allele num: 10394
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European (Non-Finnish)
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allele frequency: 1.50177209106746e-5
allele num: 66588
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.966e1

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
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DP
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BaseQRankSum
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VQSLOD
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FS
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QD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.06e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 6.085686465433301e-5
allele num: 16432
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.501366243281386e-5
allele num: 66606
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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East Asian
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allele frequency: 1.156871818602499e-4
allele num: 8644
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
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VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

DP
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FS
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SIO_000300: 3.788e0

MQRankSum
type: SiteQuality
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QD
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MQ
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 6.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e-2

BaseQRankSum
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SIO_000300: 4.01e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 7.503902029055108e-5
allele num: 66632
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African
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allele frequency: 0.0e0
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Other
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Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.070908207867897e-5
allele num: 16472
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InbreedingCoeff
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 6.25e-1

BaseQRankSum
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ClippingRankSum
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DP
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MQ
type: SiteQuality
SIO_000300: 5.974e1

MQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

ReadPosRankSum
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SIO_000300: 1.47e0

QD
type: SiteQuality
SIO_000300: 1.315e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.00048007681229e-5
allele num: 66656
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.973e1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.457e1

DP
type: SiteQuality
SIO_000300: 3.556753e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.57e-1

FS
type: SiteQuality
SIO_000300: 1.256e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 1.156604210039325e-4
allele num: 8646
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South Asian
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66654
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Latino
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allele num: 11576
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Other
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African
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.7e-2

BaseQRankSum
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DP
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VQSLOD
type: SiteQuality
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FS
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MQ
type: SiteQuality
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MQRankSum
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QD
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ReadPosRankSum
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InbreedingCoeff
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SIO_000300: 1.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 1
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allele num: 6614
num of homozygotes: 0

South Asian
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African
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allele frequency: 3.845414343395501e-4
allele num: 10402
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Latino
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Other
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East Asian
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allele num: 8648
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European (Non-Finnish)
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allele frequency: 0.0e0
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InbreedingCoeff
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ClippingRankSum
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MQ
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VQSLOD
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MQRankSum
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FS
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DP
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BaseQRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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East Asian
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South Asian
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allele num: 16512
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European (Finnish)
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allele frequency: 3.023888720895071e-4
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European (Non-Finnish)
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allele frequency: 2.549107812265707e-4
allele num: 66690
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African
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FS
type: SiteQuality
SIO_000300: 6.2e-1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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MQRankSum
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DP
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MQ
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BaseQRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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African
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Other
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South Asian
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East Asian
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European (Finnish)
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VQSLOD
type: SiteQuality
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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DP
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QD
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InbreedingCoeff
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FS
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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Other
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South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
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European (Finnish)
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African
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European (Non-Finnish)
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allele num: 66706
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FS
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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SIO_000300: 1.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.58e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

VQSLOD
type: SiteQuality
SIO_000300: 2.71e0

QD
type: SiteQuality
SIO_000300: 1.404e1

DP
type: SiteQuality
SIO_000300: 3.554806e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.15e0

GenotypeQuality
all individuals: 1815
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
all individuals: 14493
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.71e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e0

FS
type: SiteQuality
SIO_000300: 1.214e0

DP
type: SiteQuality
SIO_000300: 3.554806e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.58e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.9e-2

QD
type: SiteQuality
SIO_000300: 1.404e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.98e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.15e0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 620
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e0

FS
type: SiteQuality
SIO_000300: 1.214e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.15e0

DP
type: SiteQuality
SIO_000300: 3.554806e6

MQRankSum
type: SiteQuality
SIO_000300: -2.9e-2

MQ
type: SiteQuality
SIO_000300: 5.98e1

VQSLOD
type: SiteQuality
SIO_000300: 2.71e0

QD
type: SiteQuality
SIO_000300: 1.404e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.58e-1

GenotypeQuality
all individuals: 211
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 620
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.67e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 3.554559e6

FS
type: SiteQuality
SIO_000300: 1.1839e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.44e0

VQSLOD
type: SiteQuality
SIO_000300: -2.22e0

QD
type: SiteQuality
SIO_000300: 1.35e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.86e-1

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
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GenotypeQuality
all individuals: 8049
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
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variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.25e1
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GenotypeQuality
all individuals: 622
bin: 8.25e1
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GenotypeQuality
all individuals: 33638
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.763e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.96e-1

QD
type: SiteQuality
SIO_000300: 1.596e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -8.919e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.345e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

DP
type: SiteQuality
SIO_000300: 3.55466e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.23e-1

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 17083
bin: 9.75e1
variant carriers: 16714

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 1660
bin: 7.25e1
variant carriers: 4

GenotypeQuality
all individuals: 139
bin: 9.25e1
variant carriers: 5

GenotypeQuality
all individuals: 32044
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 499
bin: 8.25e1
variant carriers: 5

South Asian
type: Population
allele count: 2623
allele frequency: 1.588541666666667e-1
allele num: 16512
num of homozygotes: 213

African
type: Population
allele count: 3644
allele frequency: 3.503172466833301e-1
allele num: 10402
num of homozygotes: 666

East Asian
type: Population
allele count: 1829
allele frequency: 2.11591855622397e-1
allele num: 8644
num of homozygotes: 211

Other
type: Population
allele count: 118
allele frequency: 1.299559471365639e-1
allele num: 908
num of homozygotes: 12

European (Non-Finnish)
type: Population
allele count: 8237
allele frequency: 1.234562350119904e-1
allele num: 66720
num of homozygotes: 468

European (Finnish)
type: Population
allele count: 923
allele frequency: 1.395524644693075e-1
allele num: 6614
num of homozygotes: 60

Latino
type: Population
allele count: 1045
allele frequency: 9.027297857636489e-2
allele num: 11576
num of homozygotes: 50

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.46e-2

FS
type: SiteQuality
SIO_000300: 5.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.19e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.98e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.677e0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

QD
type: SiteQuality
SIO_000300: 1.565e1

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 3.773502e6

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1474
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 32167
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variant carriers: 0

GenotypeQuality
all individuals: 213
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variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1690
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.981e1

DP
type: SiteQuality
SIO_000300: 2.928788e6

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

FS
type: SiteQuality
SIO_000300: 2.001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.098e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-2

QD
type: SiteQuality
SIO_000300: 8.73e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.3e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7708
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 1473
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GenotypeQuality
all individuals: 213
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 585
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 195
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variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.8e-1

FS
type: SiteQuality
SIO_000300: 2.45e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

MQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

DP
type: SiteQuality
SIO_000300: 2.928873e6

VQSLOD
type: SiteQuality
SIO_000300: 3.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

QD
type: SiteQuality
SIO_000300: 1.742e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.01e-1

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 32172
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 1691
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GenotypeQuality
all individuals: 16596
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 586
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variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.468208092485549e-4
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.928742e6

MQ
type: SiteQuality
SIO_000300: 5.946e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 3.332e0

QD
type: SiteQuality
SIO_000300: 1.673e1

MQRankSum
type: SiteQuality
SIO_000300: -6.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.146e0

VQSLOD
type: SiteQuality
SIO_000300: -1.046e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-1

GenotypeQuality
all individuals: 194
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16596
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 585
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 1691
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variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.994844433786943e-5
allele num: 66724
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.49e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.46e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

DP
type: SiteQuality
SIO_000300: 2.928579e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

QD
type: SiteQuality
SIO_000300: 1.537e1

GenotypeQuality
all individuals: 194
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 584
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GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 1471
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GenotypeQuality
all individuals: 1692
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GenotypeQuality
all individuals: 7699
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GenotypeQuality
all individuals: 9
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.376e1

FS
type: SiteQuality
SIO_000300: 4.245e0

VQSLOD
type: SiteQuality
SIO_000300: 8.169999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.42e-1

InbreedingCoeff
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SIO_000300: 0.0e0

DP
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SIO_000300: 2.928401e6

MQ
type: SiteQuality
SIO_000300: 5.976e1

ClippingRankSum
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SIO_000300: 1.18e0

BaseQRankSum
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SIO_000300: 7.18e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

MQRankSum
type: SiteQuality
SIO_000300: 8.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.978e1

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.128e0

VQSLOD
type: SiteQuality
SIO_000300: 8.48e-1

QD
type: SiteQuality
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DP
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SIO_000300: 2.928258e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10404
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South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.444e0

VQSLOD
type: SiteQuality
SIO_000300: 8.100000000000001e-1

InbreedingCoeff
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DP
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SIO_000300: 2.928109e6

MQ
type: SiteQuality
SIO_000300: 5.945e1

BaseQRankSum
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QD
type: SiteQuality
SIO_000300: 1.19e1

MQRankSum
type: SiteQuality
SIO_000300: 5.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.69e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66692
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.306e1

VQSLOD
type: SiteQuality
SIO_000300: 2.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.912e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.283e0

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.58e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

DP
type: SiteQuality
SIO_000300: 2.92762e6

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
allele num: 8648
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 1.816860465116279e-4
allele num: 16512
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.07e-1

MQ
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DP
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SIO_000300: 2.927687e6

BaseQRankSum
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QD
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -2.75e-2

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0