4-54256059-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54256059
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54256059
    reference: chr 4
allele count: 6
allele frequency: 4.952129415648729e-5
allele num: 121160
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1689+19G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.397+19G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.393+19G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.352+19G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.352+19G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.59-629G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.397+19G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.352+19G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000511376
  gene symbol: FIP1L1
  hgvsc: ENST00000511376.1:n.505+19G>A
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4451
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2918
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6861
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11944
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3604
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23127
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/4-54256075-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54256075
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54256075
    reference: chr 4
allele count: 4
allele frequency: 3.303055326176714e-5
allele num: 121100
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.397+35A>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.393+35A>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.352+35A>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.352+35A>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.352+35A>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.397+35A>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.59-613A>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1689+35A>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000511376
  gene symbol: FIP1L1
  hgvsc: ENST00000511376.1:n.505+35A>C
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10224
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4396
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6803
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13801
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11488
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20707
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1851
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12563
  bin: 9.75e1
  variant carriers: 4
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP

4-54256077-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54256077
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54256077
    reference: chr 4
allele count: 1
allele frequency: 8.261458643138033e-6
allele num: 121044
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1689+37T>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.59-611T>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.397+37T>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.352+37T>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.352+37T>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.393+37T>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.397+37T>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.352+37T>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000511376
  gene symbol: FIP1L1
  hgvsc: ENST00000511376.1:n.505+37T>A
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11386
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6792
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2692
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10064
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2375
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4418
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

4-54256081-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54256081
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54256081
    reference: chr 4
allele count: 1
allele frequency: 8.267195767195768e-6
allele num: 120960
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.352+41G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.397+41G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.352+41G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1689+41G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000511376
  gene symbol: FIP1L1
  hgvsc: ENST00000511376.1:n.505+41G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.352+41G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.393+41G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.397+41G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.59-607G>A
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3622
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6766
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11149
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2907
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10062
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12831
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3454
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3393
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18567
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

4-54256084-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54256084
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54256084
    reference: chr 4
allele count: 1
allele frequency: 8.274583788435442e-6
allele num: 120852
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.59-604C>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.397+44C>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000511376
  gene symbol: FIP1L1
  hgvsc: ENST00000511376.1:n.505+44C>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.397+44C>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.352+44C>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.393+44C>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.352+44C>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1689+44C>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.352+44C>G
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12095
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10962
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10793
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3822
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6734
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1111
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1844
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2371
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ

4-54256637-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54256637
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54256637
    reference: chr 4
allele count: 316
allele frequency: 2.617280678505168e-3
allele num: 120736
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.59-51G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.398-51G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.353-51G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1690-51G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.353-51G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.398-51G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.394-51G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000511376
  gene symbol: FIP1L1
  hgvsc: ENST00000511376.1:n.506-51G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.353-51G>A
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22801
  bin: 2.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 4075
  bin: 3.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 9428
  bin: 2.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 11202
  bin: 3.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 4.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 5.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 1.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 5.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 4.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10993
  bin: 9.75e1
  variant carriers: 314
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7861
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

4-54256640-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54256640
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54256640
    reference: chr 4
allele count: 12678
allele frequency: 1.049868331704732e-1
allele num: 120758
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.353-48T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.394-48T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1690-48T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.353-48T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.59-48T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.398-48T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.398-48T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000511376
  gene symbol: FIP1L1
  hgvsc: ENST00000511376.1:n.506-48T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.353-48T>C
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 1.25e1
  variant carriers: 238
genotype depth: GenotypeDepth
  all individuals: 3966
  bin: 3.75e1
  variant carriers: 1471
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.5e0
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 4.25e1
  variant carriers: 1365
genotype depth: GenotypeDepth
  all individuals: 9697
  bin: 2.25e1
  variant carriers: 968
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 5.25e1
  variant carriers: 730
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 1.75e1
  variant carriers: 600
genotype depth: GenotypeDepth
  all individuals: 11108
  bin: 3.25e1
  variant carriers: 1508
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 4.75e1
  variant carriers: 1064
genotype depth: GenotypeDepth
  all individuals: 22865
  bin: 2.75e1
  variant carriers: 1268
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 5.75e1
  variant carriers: 493
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 8.25e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.25e1
  variant carriers: 146
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 6.75e1
  variant carriers: 211
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 9.75e1
  variant carriers: 460
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.25e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.75e1
  variant carriers: 125
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 6.25e1
  variant carriers: 309
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 5.25e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 5.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 9.25e1
  variant carriers: 77
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 8.75e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 27569
  bin: 6.25e1
  variant carriers: 57
num of homozygotes: 1445
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

4-54256649-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54256649
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54256649
    reference: chr 4
allele count: 1
allele frequency: 8.27034090345204e-6
allele num: 120914
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.59-39G>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.394-39G>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.353-39G>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.353-39G>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1690-39G>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.398-39G>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.398-39G>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000511376
  gene symbol: FIP1L1
  hgvsc: ENST00000511376.1:n.506-39G>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.353-39G>C
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2949
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26641
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11868
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11664
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1625
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

4-54256650-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54256650
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54256650
    reference: chr 4
allele count: 3
allele frequency: 2.481800132362674e-5
allele num: 120880
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.59-38C>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.398-38C>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.353-38C>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.353-38C>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.394-38C>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1690-38C>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000511376
  gene symbol: FIP1L1
  hgvsc: ENST00000511376.1:n.506-38C>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.398-38C>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.353-38C>G
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26705
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11699
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11879
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2954
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8978
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

4-54256656-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54256656
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54256655
    reference: chr 4
allele count: 1
allele frequency: 8.265555775970376e-6
allele num: 120984
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.398-31delA
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.353-31delA
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.398-31delA
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.353-31delA
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.353-31delA
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.59-31delA
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.394-31delA
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1690-31delA
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000511376
  gene symbol: FIP1L1
  hgvsc: ENST00000511376.1:n.506-31delA
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26883
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12288
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11679
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: TA
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

4-54256658-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54256658
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54256658
    reference: chr 4
allele count: 1
allele frequency: 8.264599414866361e-6
allele num: 120998
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.398-30G>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.353-30G>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.353-30G>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.59-30G>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1690-30G>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.394-30G>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.398-30G>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.353-30G>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000511376
  gene symbol: FIP1L1
  hgvsc: ENST00000511376.1:n.506-30G>C
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12378
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26924
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11704
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5393
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2453
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/4-54256666-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54256666
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54256666
    reference: chr 4
allele count: 1
allele frequency: 8.258593066085262e-6
allele num: 121086
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.353-22A>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.353-22A>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.394-22A>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.59-22A>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.353-22A>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.398-22A>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1690-22A>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000511376
  gene symbol: FIP1L1
  hgvsc: ENST00000511376.1:n.506-22A>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.398-22A>C
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11734
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27181
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12546
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

4-54256668-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54256668
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54256668
    reference: chr 4
allele count: 1
allele frequency: 8.256820133430213e-6
allele num: 121112
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000511376
  gene symbol: FIP1L1
  hgvsc: ENST00000511376.1:n.506-20T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.353-20T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.398-20T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.59-20T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.353-20T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.398-20T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1690-20T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.394-20T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.353-20T>C
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12598
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27202
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37380
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD

4-54256672-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54256672
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54256672
    reference: chr 4
allele count: 1
allele frequency: 8.253685270473266e-6
allele num: 121158
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.59-16T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.353-16T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.353-16T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000511376
  gene symbol: FIP1L1
  hgvsc: ENST00000511376.1:n.506-16T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.394-16T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.398-16T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.398-16T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.353-16T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1690-16T>C
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27260
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11738
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12661
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9032
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP

4-54256679-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54256679
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54256679
    reference: chr 4
allele count: 1
allele frequency: 8.250280509537325e-6
allele num: 121208
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.353-9A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.353-9A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.398-9A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.353-9A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000511376
  gene symbol: FIP1L1
  hgvsc: ENST00000511376.1:n.506-9A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.394-9A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1690-9A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.59-9A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.398-9A>G
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11749
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27322
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12760
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2948
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2450
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2715
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

4-54256681-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54256681
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54256681
    reference: chr 4
allele count: 1
allele frequency: 8.249872126982032e-6
allele num: 121214
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.353-7A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1690-7A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.353-7A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.398-7A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.398-7A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.394-7A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000511376
  gene symbol: FIP1L1
  hgvsc: ENST00000511376.1:n.506-7A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.353-7A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.59-7A>G
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11752
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12782
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: c.398-7A>G
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD

4-54256684-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54256684
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54256684
    reference: chr 4
allele count: 1
allele frequency: 8.24715060946443e-6
allele num: 121254
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.353-4A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.394-4A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.398-4A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.59-4A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.353-4A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1690-4A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.353-4A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.398-4A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000511376
  gene symbol: FIP1L1
  hgvsc: ENST00000511376.1:n.506-4A>G
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12798
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27366
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1588
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2713
  bin: 7.75e1
  variant carriers: 0
hgvs: c.398-4A>G
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

4-54256688-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54256688
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54256688
    reference: chr 4
allele count: 3
allele frequency: 2.473614775725594e-5
allele num: 121280
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.398G>T
  hgvsp: ENSP00000336752.6:p.Gly133Val
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.353G>T
  hgvsp: ENSP00000425456.1:p.Gly118Val
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.353G>T
  hgvsp: ENSP00000351383.5:p.Gly118Val
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.398G>T
  hgvsp: ENSP00000423325.1:p.Gly133Val
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000511376
  gene symbol: FIP1L1
  hgvsc: ENST00000511376.1:n.506G>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.59G>T
  hgvsp: ENSP00000421241.1:p.Gly21Ter
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1690G>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.394G>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.353G>T
  hgvsp: ENSP00000302993.6:p.Gly118Val
  variant of: http://identifiers.org/hgnc/19124
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27406
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12794
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37907
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly21Ter
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

4-54256689-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54256689
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54256689
    reference: chr 4
allele count: 1
allele frequency: 8.244430886935875e-6
allele num: 121294
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.399G>A
  hgvsp: ENST00000337488.6:c.399G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000511376
  gene symbol: FIP1L1
  hgvsc: ENST00000511376.1:n.507G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.354G>A
  hgvsp: ENST00000507922.1:c.354G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.399G>A
  hgvsp: ENST00000507166.1:c.399G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.395G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.354G>A
  hgvsp: ENST00000358575.5:c.354G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.60G>A
  hgvsp: ENSP00000421241.1:p.Gly21Glu
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1691G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.354G>A
  hgvsp: ENST00000306932.6:c.354G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12797
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11771
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27410
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly21Glu
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/4-54256698-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54256698
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54256698
    reference: chr 4
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1700C>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.408C>A
  hgvsp: ENST00000507166.1:c.408C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.69C>A
  hgvsp: ENSP00000421241.1:p.Ser24Ter
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000511376
  gene symbol: FIP1L1
  hgvsc: ENST00000511376.1:n.516C>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.408C>A
  hgvsp: ENST00000337488.6:c.408C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.363C>A
  hgvsp: ENST00000507922.1:c.363C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.363C>A
  hgvsp: ENST00000306932.6:c.363C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.363C>A
  hgvsp: ENST00000358575.5:c.363C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.404C>A
  variant of: http://identifiers.org/hgnc/19124
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12808
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27447
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11772
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5386
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1589
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser24Ter
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

4-54256713-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54256713
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54256713
    reference: chr 4
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.423T>G
  hgvsp: ENST00000337488.6:c.423T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.419T>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.378T>G
  hgvsp: ENST00000306932.6:c.378T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.378T>G
  hgvsp: ENST00000358575.5:c.378T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000511376
  gene symbol: FIP1L1
  hgvsc: ENST00000511376.1:n.531T>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1715T>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.423T>G
  hgvsp: ENST00000507166.1:c.423T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*5T>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.378T>G
  hgvsp: ENST00000507922.1:c.378T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27466
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2711
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu141Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

4-54256724-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54256724
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54256724
    reference: chr 4
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.430G>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*16G>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.389G>C
  hgvsp: ENSP00000302993.6:p.Gly130Ala
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1726G>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.389G>C
  hgvsp: ENSP00000351383.5:p.Gly130Ala
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.389G>C
  hgvsp: ENSP00000425456.1:p.Gly130Ala
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.434G>C
  hgvsp: ENSP00000423325.1:p.Gly145Ala
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.434G>C
  hgvsp: ENSP00000336752.6:p.Gly145Ala
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000511376
  gene symbol: FIP1L1
  hgvsc: ENST00000511376.1:n.542G>C
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2944
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12847
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5384
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly145Ala
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum

4-54256726-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54256726
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54256726
    reference: chr 4
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.432A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1728A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.391A>G
  hgvsp: ENSP00000351383.5:p.Ser131Gly
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.391A>G
  hgvsp: ENSP00000302993.6:p.Ser131Gly
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.436A>G
  hgvsp: ENSP00000423325.1:p.Ser146Gly
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.436A>G
  hgvsp: ENSP00000336752.6:p.Ser146Gly
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000511376
  gene symbol: FIP1L1
  hgvsc: ENST00000511376.1:n.544A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.391A>G
  hgvsp: ENSP00000425456.1:p.Ser131Gly
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*18A>G
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11773
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27480
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2944
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12848
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2455
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1587
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser146Gly
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS

4-54256727-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54256727
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54256727
    reference: chr 4
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.437G>T
  hgvsp: ENSP00000336752.6:p.Ser146Ile
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.392G>T
  hgvsp: ENSP00000351383.5:p.Ser131Ile
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.392G>T
  hgvsp: ENSP00000302993.6:p.Ser131Ile
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.437G>T
  hgvsp: ENSP00000423325.1:p.Ser146Ile
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000511376
  gene symbol: FIP1L1
  hgvsc: ENST00000511376.1:n.545G>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.433G>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1729G>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.392G>T
  hgvsp: ENSP00000425456.1:p.Ser131Ile
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*19G>T
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12849
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2943
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38054
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser146Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

4-54256729-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54256729
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54256729
    reference: chr 4
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*21A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.435A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.439A>G
  hgvsp: ENSP00000423325.1:p.Ile147Val
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.394A>G
  hgvsp: ENSP00000425456.1:p.Ile132Val
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.439A>G
  hgvsp: ENSP00000336752.6:p.Ile147Val
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000511376
  gene symbol: FIP1L1
  hgvsc: ENST00000511376.1:n.547A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.394A>G
  hgvsp: ENSP00000302993.6:p.Ile132Val
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1731A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.394A>G
  hgvsp: ENSP00000351383.5:p.Ile132Val
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12847
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2943
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27485
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9072
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile147Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

4-54256742-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54256742
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54256742
    reference: chr 4
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1744C>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.448C>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.452C>T
  hgvsp: ENSP00000423325.1:p.Pro151Leu
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.407C>T
  hgvsp: ENSP00000425456.1:p.Pro136Leu
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.407C>T
  hgvsp: ENSP00000302993.6:p.Pro136Leu
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.407C>T
  hgvsp: ENSP00000351383.5:p.Pro136Leu
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000511376
  gene symbol: FIP1L1
  hgvsc: ENST00000511376.1:n.560C>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*34C>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.452C>T
  hgvsp: ENSP00000336752.6:p.Pro151Leu
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12839
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27491
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2707
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro151Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

4-54256745-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54256745
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54256745
    reference: chr 4
allele count: 2
allele frequency: 1.647473599235572e-5
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*37T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.410T>C
  hgvsp: ENSP00000425456.1:p.Leu137Pro
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.451T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.455T>C
  hgvsp: ENSP00000336752.6:p.Leu152Pro
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.410T>C
  hgvsp: ENSP00000302993.6:p.Leu137Pro
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.410T>C
  hgvsp: ENSP00000351383.5:p.Leu137Pro
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000511376
  gene symbol: FIP1L1
  hgvsc: ENST00000511376.1:n.563T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.455T>C
  hgvsp: ENSP00000423325.1:p.Leu152Pro
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1747T>C
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12841
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27488
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9071
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu152Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

4-54256752-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54256752
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54256752
    reference: chr 4
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.417G>A
  hgvsp: ENST00000358575.5:c.417G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.462G>A
  hgvsp: ENST00000337488.6:c.462G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*44G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.462G>A
  hgvsp: ENST00000507166.1:c.462G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1754G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000511376
  gene symbol: FIP1L1
  hgvsc: ENST00000511376.1:n.570G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.417G>A
  hgvsp: ENST00000507922.1:c.417G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.417G>A
  hgvsp: ENST00000306932.6:c.417G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.458G>A
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11771
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12841
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27483
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1587
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu154Glu
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff

4-54256775-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54256775
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54256775
    reference: chr 4
allele count: 1
allele frequency: 8.242935804015958e-6
allele num: 121316
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.440A>G
  hgvsp: ENSP00000302993.6:p.Asp147Gly
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.440A>G
  hgvsp: ENSP00000351383.5:p.Asp147Gly
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1777A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*67A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.485A>G
  hgvsp: ENSP00000336752.6:p.Asp162Gly
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.440A>G
  hgvsp: ENSP00000425456.1:p.Asp147Gly
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.481A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.485A>G
  hgvsp: ENSP00000423325.1:p.Asp162Gly
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27487
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12753
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11755
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2700
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2442
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37972
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp162Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum

http://identifiers.org/exac.variant/4-54256778-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54256778
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54256778
    reference: chr 4
allele count: 1
allele frequency: 8.244702778464837e-6
allele num: 121290
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*70A>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.443A>C
  hgvsp: ENSP00000425456.1:p.Lys148Thr
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.443A>C
  hgvsp: ENSP00000302993.6:p.Lys148Thr
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.484A>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.443A>C
  hgvsp: ENSP00000351383.5:p.Lys148Thr
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.488A>C
  hgvsp: ENSP00000336752.6:p.Lys163Thr
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1780A>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.488A>C
  hgvsp: ENSP00000423325.1:p.Lys163Thr
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11755
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1590
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9051
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5377
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2698
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys163Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

4-54256802-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54256802
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54256802
    reference: chr 4
allele count: 2
allele frequency: 1.671067143477825e-5
allele num: 119684
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.501+7T>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.460+7T>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.505+7T>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.505+7T>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1797+7T>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.460+7T>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.460+7T>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*87+7T>A
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11160
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2800
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26532
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11190
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 813
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2057
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1436
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 8.75e1
  variant carriers: 0
hgvs: c.505+7T>A
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP

4-54256810-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54256810
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54256810
    reference: chr 4
allele count: 5
allele frequency: 4.196109367394552e-5
allele num: 119158
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.460+15G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.460+15G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1797+15G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.460+15G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.505+15G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.501+15G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.505+15G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*87+15G>A
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3274
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25748
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10646
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10885
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2979
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1418
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/4-54256819-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54256819
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54256819
    reference: chr 4
allele count: 1
allele frequency: 8.46123906384851e-6
allele num: 118186
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.505+24A>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.460+24A>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1797+24A>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.460+24A>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.501+24A>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.505+24A>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.460+24A>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*87+24A>C
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6463
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9794
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23330
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2249
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2009
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30613
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: A
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

4-54256836-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54256836
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54256835
    reference: chr 4
allele count: 6
allele frequency: 5.170452586949778e-5
allele num: 116044
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.460+42delG
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.501+42delG
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.460+42delG
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1797+42delG
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.505+42delG
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.505+42delG
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*87+42delG
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.460+42delG
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5937
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6947
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12805
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14603
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10192
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 798
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3046
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14419
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6132
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6036
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4932
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: TG
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

4-54256841-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54256841
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54256841
    reference: chr 4
allele count: 2
allele frequency: 1.746511343591177e-5
allele num: 114514
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.505+46A>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*87+46A>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1797+46A>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.460+46A>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.501+46A>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.505+46A>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.460+46A>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.460+46A>T
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9828
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11595
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4710
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14370
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9421
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5548
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9793
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1283
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3106
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1894
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3385
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

4-54256844-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54256844
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54256844
    reference: chr 4
allele count: 300
allele frequency: 2.641077559644335e-3
allele num: 113590
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.501+49C>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.460+49C>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1797+49C>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.505+49C>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.505+49C>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*87+49C>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.460+49C>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.460+49C>G
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12613
  bin: 2.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 7.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9769
  bin: 1.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14288
  bin: 1.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 8693
  bin: 2.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4406
  bin: 3.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 3.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 7953
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3099
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5179
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1853
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1193
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 7.5e0
  variant carriers: 1
num of homozygotes: 2
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

4-54256846-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54256846
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54256846
    reference: chr 4
allele count: 1
allele frequency: 8.870438377064595e-6
allele num: 112734
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1797+51T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*87+51T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.505+51T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.460+51T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.460+51T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.501+51T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.460+51T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.505+51T>C
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9743
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4169
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8274
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13270
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3459
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5167
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6139
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5490
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1389
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6162
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2233
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

4-54256847-CAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54256847
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54256845
    reference: chr 4
allele count: 1
allele frequency: 8.899172376968941e-6
allele num: 112370
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.460+54_460+55delGA
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.460+54_460+55delGA
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.460+54_460+55delGA
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.501+54_501+55delGA
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*87+54_*87+55delGA
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1797+54_1797+55delGA
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.505+54_505+55delGA
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.505+54_505+55delGA
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8299
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14203
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9754
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2120
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4474
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3284
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3076
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1921
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3460
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: CAG
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

4-54257127-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54257127
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54257127
    reference: chr 4
allele count: 3
allele frequency: 2.610193676370787e-5
allele num: 114934
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.461-49A>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*88-49A>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.502-49A>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.461-49A>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.506-49A>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1798-49A>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.506-49A>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.461-49A>T
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8172
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5088
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6634
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10363
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5240
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3094
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11280
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3870
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1937
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2072
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3122
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4389
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1048
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD

4-54257131-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54257131
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54257131
    reference: chr 4
allele count: 20838
allele frequency: 1.809325345141964e-1
allele num: 115170
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.506-45A>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.461-45A>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1798-45A>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.506-45A>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.461-45A>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.502-45A>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.461-45A>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*88-45A>T
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8596
  bin: 3.25e1
  variant carriers: 2753
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 5.25e1
  variant carriers: 439
genotype depth: GenotypeDepth
  all individuals: 5558
  bin: 3.75e1
  variant carriers: 1956
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 5.75e1
  variant carriers: 340
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 7.5e0
  variant carriers: 570
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 6.25e1
  variant carriers: 231
genotype depth: GenotypeDepth
  all individuals: 5204
  bin: 1.75e1
  variant carriers: 2049
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 4.75e1
  variant carriers: 673
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 2.5e0
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 4836
  bin: 1.25e1
  variant carriers: 1448
genotype depth: GenotypeDepth
  all individuals: 10537
  bin: 2.75e1
  variant carriers: 3378
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 9.75e1
  variant carriers: 693
genotype depth: GenotypeDepth
  all individuals: 11417
  bin: 2.25e1
  variant carriers: 2942
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 6.75e1
  variant carriers: 201
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.25e1
  variant carriers: 149
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 120
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 125
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 9.25e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 3431
  bin: 4.25e1
  variant carriers: 1232
genotype quality: GenotypeQuality
  all individuals: 3108
  bin: 7.75e1
  variant carriers: 221
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 7.5e0
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 6427
  bin: 6.25e1
  variant carriers: 157
genotype quality: GenotypeQuality
  all individuals: 28216
  bin: 9.75e1
  variant carriers: 17343
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 5.75e1
  variant carriers: 99
genotype quality: GenotypeQuality
  all individuals: 3616
  bin: 6.75e1
  variant carriers: 175
genotype quality: GenotypeQuality
  all individuals: 1530
  bin: 2.25e1
  variant carriers: 81
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 2.75e1
  variant carriers: 66
num of homozygotes: 2024
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

4-54257134-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54257134
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54257134
    reference: chr 4
allele count: 1
allele frequency: 8.65516107254756e-6
allele num: 115538
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.506-42G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1798-42G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.506-42G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.502-42G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.461-42G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*88-42G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.461-42G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.461-42G>A
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5758
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3965
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4613
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2332
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8917
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10765
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12334
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4052
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5053
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1160
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4476
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1879
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

4-54257158-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54257158
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54257158
    reference: chr 4
allele count: 1
allele frequency: 8.559445347941453e-6
allele num: 116830
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.461-18G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1798-18G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.506-18G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.461-18G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*88-18G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.502-18G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.461-18G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.506-18G>A
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5852
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2013
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4774
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3084
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17570
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

4-54257161-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54257161
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54257161
    reference: chr 4
allele count: 3
allele frequency: 2.562875888463641e-5
allele num: 117056
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.506-15G>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1798-15G>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*88-15G>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.502-15G>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.461-15G>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.506-15G>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.461-15G>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.461-15G>T
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9823
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1834
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5851
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17325
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4427
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

4-54257168-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54257168
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54257168
    reference: chr 4
allele count: 3
allele frequency: 2.551410930244425e-5
allele num: 117582
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.502-8A>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.461-8A>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.461-8A>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.506-8A>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.506-8A>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*88-8A>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.461-8A>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1798-8A>T
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9911
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5874
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11779
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15188
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3133
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
hgvs: c.506-8A>T
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

4-54257174-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54257174
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54257174
    reference: chr 4
allele count: 1
allele frequency: 8.457088731774973e-6
allele num: 118244
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1798-2A>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*88-2A>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.506-2A>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.502-2A>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.461-2A>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.461-2A>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.461-2A>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.506-2A>T
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: splice acceptor
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18422
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5892
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3593
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11946
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1418
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5532
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17609
  bin: 9.75e1
  variant carriers: 1
hgvs: c.506-2A>T
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

4-54257192-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54257192
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54257192
    reference: chr 4
allele count: 10
allele frequency: 8.337641114575864e-5
allele num: 119938
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.477T>C
  hgvsp: ENST00000358575.5:c.477T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.522T>C
  hgvsp: ENST00000507166.1:c.522T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.477T>C
  hgvsp: ENST00000306932.6:c.477T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.518T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.522T>C
  hgvsp: ENST00000337488.6:c.522T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.477T>C
  hgvsp: ENST00000507922.1:c.477T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1814T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*104T>C
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12535
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3604
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5909
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10109
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17299
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2401
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3658
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp174Asp
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

4-54257212-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54257212
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54257212
    reference: chr 4
allele count: 1
allele frequency: 8.287063893262618e-6
allele num: 120670
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1834A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*124A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.497A>G
  hgvsp: ENSP00000351383.5:p.Asn166Ser
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.497A>G
  hgvsp: ENSP00000302993.6:p.Asn166Ser
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.497A>G
  hgvsp: ENSP00000425456.1:p.Asn166Ser
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.542A>G
  hgvsp: ENSP00000423325.1:p.Asn181Ser
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.542A>G
  hgvsp: ENSP00000336752.6:p.Asn181Ser
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.538A>G
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10158
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3616
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12756
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5924
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19698
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5702
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17644
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn181Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/4-54257221-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54257221
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54257221
    reference: chr 4
allele count: 5
allele frequency: 4.137839716640736e-5
allele num: 120836
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.551C>A
  hgvsp: ENSP00000336752.6:p.Thr184Asn
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.551C>A
  hgvsp: ENSP00000423325.1:p.Thr184Asn
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1843C>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.506C>A
  hgvsp: ENSP00000425456.1:p.Thr169Asn
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*133C>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.506C>A
  hgvsp: ENSP00000302993.6:p.Thr169Asn
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.547C>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.506C>A
  hgvsp: ENSP00000351383.5:p.Thr169Asn
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3616
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5933
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19734
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12793
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18147
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr184Asn
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

4-54257221-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54257221
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54257221
    reference: chr 4
allele count: 1
allele frequency: 8.275679433281473e-6
allele num: 120836
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.551C>T
  hgvsp: ENSP00000423325.1:p.Thr184Ile
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.551C>T
  hgvsp: ENSP00000336752.6:p.Thr184Ile
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.506C>T
  hgvsp: ENSP00000425456.1:p.Thr169Ile
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.506C>T
  hgvsp: ENSP00000302993.6:p.Thr169Ile
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*133C>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1843C>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.547C>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.506C>T
  hgvsp: ENSP00000351383.5:p.Thr169Ile
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19734
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12793
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5933
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3616
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3227
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4910
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr184Ile
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

4-54257229-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54257229
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54257229
    reference: chr 4
allele count: 1
allele frequency: 8.271298593879239e-6
allele num: 120900
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.514G>A
  hgvsp: ENSP00000351383.5:p.Ala172Thr
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.514G>A
  hgvsp: ENSP00000425456.1:p.Ala172Thr
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.559G>A
  hgvsp: ENSP00000423325.1:p.Ala187Thr
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.555G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.514G>A
  hgvsp: ENSP00000302993.6:p.Ala172Thr
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*141G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.559G>A
  hgvsp: ENSP00000336752.6:p.Ala187Thr
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1851G>A
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12799
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19750
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3623
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5943
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4919
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3678
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5735
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala187Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ

4-54257231-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54257231
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54257231
    reference: chr 4
allele count: 1
allele frequency: 8.272803984182399e-6
allele num: 120878
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1853T>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*143T>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.561T>G
  hgvsp: ENST00000337488.6:c.561T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.516T>G
  hgvsp: ENST00000306932.6:c.516T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.561T>G
  hgvsp: ENST00000507166.1:c.561T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.516T>G
  hgvsp: ENST00000507922.1:c.516T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.516T>G
  hgvsp: ENST00000358575.5:c.516T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.557T>G
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12807
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3625
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18169
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5733
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2411
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala187Ala
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum

4-54257236-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54257236
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54257236
    reference: chr 4
allele count: 1
allele frequency: 8.267195767195768e-6
allele num: 120960
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.521G>C
  hgvsp: ENSP00000425456.1:p.Cys174Ser
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.566G>C
  hgvsp: ENSP00000336752.6:p.Cys189Ser
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1858G>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.566G>C
  hgvsp: ENSP00000423325.1:p.Cys189Ser
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*148G>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.521G>C
  hgvsp: ENSP00000302993.6:p.Cys174Ser
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.562G>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.521G>C
  hgvsp: ENSP00000351383.5:p.Cys174Ser
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19760
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12802
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5946
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4919
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3232
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Cys189Ser
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

4-54257246-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54257246
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54257246
    reference: chr 4
allele count: 4
allele frequency: 3.305949055325058e-5
allele num: 120994
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.531A>G
  hgvsp: ENST00000306932.6:c.531A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.531A>G
  hgvsp: ENST00000507922.1:c.531A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.576A>G
  hgvsp: ENST00000507166.1:c.576A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*158A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.572A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1868A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.576A>G
  hgvsp: ENST00000337488.6:c.576A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.531A>G
  hgvsp: ENST00000358575.5:c.531A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3627
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19745
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10190
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18191
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5736
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3679
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln192Gln
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

4-54257252-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54257252
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54257252
    reference: chr 4
allele count: 1
allele frequency: 8.264599414866361e-6
allele num: 120998
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*164G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.537G>A
  hgvsp: ENST00000507922.1:c.537G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1874G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.582G>A
  hgvsp: ENST00000507166.1:c.582G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.537G>A
  hgvsp: ENST00000358575.5:c.537G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.582G>A
  hgvsp: ENST00000337488.6:c.582G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.537G>A
  hgvsp: ENST00000306932.6:c.537G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.578G>A
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12818
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3627
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5948
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4553
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5734
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17670
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg194Arg
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

4-54257258-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54257258
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54257258
    reference: chr 4
allele count: 1
allele frequency: 8.264462809917356e-6
allele num: 121000
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.588A>G
  hgvsp: ENST00000337488.6:c.588A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*170A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.543A>G
  hgvsp: ENST00000306932.6:c.543A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.584A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.588A>G
  hgvsp: ENST00000507166.1:c.588A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.543A>G
  hgvsp: ENST00000507922.1:c.543A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1880A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.543A>G
  hgvsp: ENST00000358575.5:c.543A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12822
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10189
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5946
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19700
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4556
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18158
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3235
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17674
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg196Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD

4-54257261-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54257261
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54257261
    reference: chr 4
allele count: 1
allele frequency: 8.265692417053776e-6
allele num: 120982
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*173G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.546G>A
  hgvsp: ENSP00000302993.6:p.Met182Ile
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.591G>A
  hgvsp: ENSP00000423325.1:p.Met197Ile
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.591G>A
  hgvsp: ENSP00000336752.6:p.Met197Ile
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1883G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.546G>A
  hgvsp: ENSP00000351383.5:p.Met182Ile
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.587G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.546G>A
  hgvsp: ENSP00000425456.1:p.Met182Ile
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10192
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19676
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3233
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2419
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18132
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Met197Ile
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum

4-54257265-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54257265
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54257265
    reference: chr 4
allele count: 1
allele frequency: 8.266102367411717e-6
allele num: 120976
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.595C>T
  hgvsp: ENSP00000336752.6:p.Leu199Phe
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*177C>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.595C>T
  hgvsp: ENSP00000423325.1:p.Leu199Phe
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.550C>T
  hgvsp: ENSP00000302993.6:p.Leu184Phe
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.550C>T
  hgvsp: ENSP00000351383.5:p.Leu184Phe
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1887C>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.591C>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.550C>T
  hgvsp: ENSP00000425456.1:p.Leu184Phe
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5948
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19651
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12834
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5731
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4921
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2419
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu199Phe
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

4-54257288-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54257288
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54257288
    reference: chr 4
allele count: 1
allele frequency: 8.301648707433296e-6
allele num: 120458
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.573T>C
  hgvsp: ENST00000358575.5:c.573T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.614T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1910T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.573T>C
  hgvsp: ENST00000306932.6:c.573T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*200T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.618T>C
  hgvsp: ENST00000337488.6:c.618T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.618T>C
  hgvsp: ENST00000507166.1:c.618T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.573T>C
  hgvsp: ENST00000507922.1:c.573T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5943
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12763
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3683
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5677
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser206Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

4-54257295-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54257295
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54257295
    reference: chr 4
allele count: 1
allele frequency: 8.319744417451495e-6
allele num: 120196
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.625A>G
  hgvsp: ENSP00000423325.1:p.Asn209Asp
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.625A>G
  hgvsp: ENSP00000336752.6:p.Asn209Asp
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.621A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*207A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.580A>G
  hgvsp: ENSP00000351383.5:p.Asn194Asp
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.580A>G
  hgvsp: ENSP00000425456.1:p.Asn194Asp
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1917A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.580A>G
  hgvsp: ENSP00000302993.6:p.Asn194Asp
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12731
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10176
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5943
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4551
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16926
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5662
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3222
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn209Asp
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff

4-54257305-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54257305
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54257305
    reference: chr 4
allele count: 3
allele frequency: 2.509200401472064e-5
allele num: 119560
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.635C>G
  hgvsp: ENSP00000336752.6:p.Thr212Arg
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.631C>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1927C>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.590C>G
  hgvsp: ENSP00000351383.5:p.Thr197Arg
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*217C>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.590C>G
  hgvsp: ENSP00000302993.6:p.Thr197Arg
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.590C>G
  hgvsp: ENSP00000425456.1:p.Thr197Arg
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.635C>G
  hgvsp: ENSP00000423325.1:p.Thr212Arg
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10158
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17669
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12483
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5947
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1638
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5573
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15744
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3685
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr212Arg
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff

4-54257305-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54257305
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54257305
    reference: chr 4
allele count: 2
allele frequency: 1.672800267648043e-5
allele num: 119560
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.590C>T
  hgvsp: ENSP00000302993.6:p.Thr197Met
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1927C>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.635C>T
  hgvsp: ENSP00000423325.1:p.Thr212Met
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.590C>T
  hgvsp: ENSP00000351383.5:p.Thr197Met
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.635C>T
  hgvsp: ENSP00000336752.6:p.Thr212Met
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*217C>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.631C>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.590C>T
  hgvsp: ENSP00000425456.1:p.Thr197Met
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17669
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10158
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5947
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12483
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr212Met
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

4-54257306-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54257306
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54257306
    reference: chr 4
allele count: 2
allele frequency: 1.673500125512509e-5
allele num: 119510
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.632G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.636G>A
  hgvsp: ENST00000337488.6:c.636G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*218G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1928G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.591G>A
  hgvsp: ENST00000507922.1:c.591G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.591G>A
  hgvsp: ENST00000306932.6:c.591G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.591G>A
  hgvsp: ENST00000358575.5:c.591G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.636G>A
  hgvsp: ENST00000507166.1:c.636G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5940
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17605
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12444
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4903
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
hgvs: c.636G>A
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum

4-54257307-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54257307
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54257307
    reference: chr 4
allele count: 1
allele frequency: 8.370442294170824e-6
allele num: 119468
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.591+1G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*218+1G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1928+1G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.632+1G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.591+1G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.591+1G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.636+1G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.636+1G>A
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5940
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2417
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4902
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3204
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17682
  bin: 9.75e1
  variant carriers: 1
hgvs: c.636+1G>A
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

4-54257320-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54257320
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54257320
    reference: chr 4
allele count: 17
allele frequency: 1.433994095318431e-4
allele num: 118550
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.591+14A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*218+14A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.636+14A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.636+14A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.632+14A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.591+14A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1928+14A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.591+14A>G
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10067
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5937
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2417
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3196
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17691
  bin: 9.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

4-54257322-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54257322
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54257322
    reference: chr 4
allele count: 1
allele frequency: 8.43810648890389e-6
allele num: 118510
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.636+16T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*218+16T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.636+16T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.632+16T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.591+16T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1928+16T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.591+16T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.591+16T>C
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2552
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5936
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11977
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10061
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4544
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17692
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5478
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

4-54257324-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54257324
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54257324
    reference: chr 4
allele count: 1
allele frequency: 8.45522955948254e-6
allele num: 118270
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.591+18C>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1928+18C>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.591+18C>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*218+18C>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.636+18C>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.632+18C>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.636+18C>T
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.591+18C>T
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11924
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3631
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5934
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16123
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2615
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10054
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2474
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3193
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13711
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2417
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

4-54257325-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54257325
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54257325
    reference: chr 4
allele count: 1
allele frequency: 8.45522955948254e-6
allele num: 118270
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1928+19G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.591+19G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.632+19G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*218+19G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.636+19G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.636+19G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.591+19G>A
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.591+19G>A
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5934
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10044
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11875
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3633
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4541
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2517
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13702
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3685
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

4-54257327-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54257327
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54257327
    reference: chr 4
allele count: 1
allele frequency: 8.457804015765346e-6
allele num: 118234
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.636+21A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.632+21A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.636+21A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.591+21A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1928+21A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*218+21A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.591+21A>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.591+21A>G
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15989
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11816
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5934
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10035
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13512
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4886
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3194
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5466
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

4-54257329-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54257329
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54257329
    reference: chr 4
allele count: 1
allele frequency: 8.463960456376747e-6
allele num: 118148
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.632+23T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.591+23T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.591+23T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.591+23T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.636+23T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*218+23T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.636+23T>C
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1928+23T>C
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5935
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10030
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15847
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2829
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4886
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13311
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2417
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4542
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

4-54257332-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 54257332
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 54257332
    reference: chr 4
allele count: 3
allele frequency: 2.543191875349689e-5
allele num: 117962
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000425456
  ensembl transcript: ENST00000507922
  gene symbol: FIP1L1
  hgvsc: ENST00000507922.1:c.591+26C>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000336752
  ensembl transcript: ENST00000337488
  gene symbol: FIP1L1
  hgvsc: ENST00000337488.6:c.636+26C>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000351383
  ensembl transcript: ENST00000358575
  gene symbol: FIP1L1
  hgvsc: ENST00000358575.5:c.591+26C>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000302993
  ensembl transcript: ENST00000306932
  gene symbol: FIP1L1
  hgvsc: ENST00000306932.6:c.591+26C>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000423325
  ensembl transcript: ENST00000507166
  gene symbol: FIP1L1
  hgvsc: ENST00000507166.1:c.636+26C>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl protein: ENSP00000421241
  ensembl transcript: ENST00000514543
  gene symbol: FIP1L1
  hgvsc: ENST00000514543.1:c.*218+26C>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000513975
  gene symbol: FIP1L1
  hgvsc: ENST00000513975.1:n.632+26C>G
  variant of: http://identifiers.org/hgnc/19124
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000145216
  ensembl transcript: ENST00000505125
  gene symbol: FIP1L1
  hgvsc: ENST00000505125.1:n.1928+26C>G
  variant of: http://identifiers.org/hgnc/19124
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3631
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15739
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11739
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5932
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10027
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3687
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2416
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4540
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum

4-54257334-T-A
type: Variant
location: Region
allele count: 1
allele frequency: 8.485218748939348e-6
allele num: 117852
alternate allele: A
canonical: true
consequence: intron
filter: PASS
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 129
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2389
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3437
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8173
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12572
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1863
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4522
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.504233979941145e-5
allele num: 66604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.646922631680494e-5
allele num: 10366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.729804532087874e-4
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.19409e6

VQSLOD
type: SiteQuality
SIO_000300: 5.5e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.785e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.41e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

MQRankSum
type: SiteQuality
SIO_000300: 1.36e-1

QD
type: SiteQuality
SIO_000300: 1.344e1

GenotypeQuality
all individuals: 334
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 887
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2376
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3395
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4436
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7763
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3517
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 861
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.009073701288946e-5
allele num: 66566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.46e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.386e1

DP
type: SiteQuality
SIO_000300: 2.164987e6

GenotypeQuality
all individuals: 217
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19989
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12561
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1000
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3399
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7668
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1049
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1851
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3500
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.650646593321752e-5
allele num: 10362
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16432
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.4e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.201e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.159501e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.89e-1

GenotypeQuality
all individuals: 12558
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2374
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1848
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7512
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4388
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1469
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.397e0

MQRankSum
type: SiteQuality
SIO_000300: 2.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.462e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

QD
type: SiteQuality
SIO_000300: 2.42e1

DP
type: SiteQuality
SIO_000300: 2.148438e6

GenotypeQuality
all individuals: 3363
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16621
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3413
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1844
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1749
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 970
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1416
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4344
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7287
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12553
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504438092372499e-5
allele num: 66470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16354
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.71e0

VQSLOD
type: SiteQuality
SIO_000300: 2.25e0

MQRankSum
type: SiteQuality
SIO_000300: 6.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.24e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.138525e6

QD
type: SiteQuality
SIO_000300: 1.367e1

MQ
type: SiteQuality
SIO_000300: 5.939e1

GenotypeQuality
all individuals: 1186
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2466
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 937
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 947
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2135
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 25
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1425
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3054
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 709
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26892
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 266
allele frequency: 4.002648368845552e-3
allele num: 66456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.535833081342606e-4
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.950458357714063e-4
allele num: 10254
num of homozygotes: 0

Latino
type: Population
allele count: 27
allele frequency: 2.34009360374415e-3
allele num: 11538
num of homozygotes: 1

South Asian
type: Population
allele count: 16
allele frequency: 9.777560498655585e-4
allele num: 16364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.207505518763797e-3
allele num: 906
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.850000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.003423e6

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.79e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.94e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.35e-1

QD
type: SiteQuality
SIO_000300: 1.443e1

GenotypeQuality
all individuals: 198
bin: 2.75e1
variant carriers: 8

GenotypeQuality
all individuals: 2459
bin: 7.75e1
variant carriers: 68

GenotypeQuality
all individuals: 329
bin: 4.25e1
variant carriers: 16

GenotypeQuality
all individuals: 660
bin: 4.75e1
variant carriers: 27

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 5

GenotypeQuality
all individuals: 15126
bin: 9.75e1
variant carriers: 10658

GenotypeQuality
all individuals: 7404
bin: 6.75e1
variant carriers: 65

GenotypeQuality
all individuals: 44
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 49
bin: 1.75e1
variant carriers: 7

GenotypeQuality
all individuals: 392
bin: 3.75e1
variant carriers: 18

GenotypeQuality
all individuals: 2128
bin: 7.25e1
variant carriers: 53

GenotypeQuality
all individuals: 314
bin: 3.25e1
variant carriers: 12

GenotypeQuality
all individuals: 233
bin: 2.25e1
variant carriers: 8

GenotypeQuality
all individuals: 1509
bin: 8.25e1
variant carriers: 90

European (Finnish)
type: Population
allele count: 52
allele frequency: 7.866868381240545e-3
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2604
allele frequency: 3.918382087396172e-2
allele num: 66456
num of homozygotes: 50

Latino
type: Population
allele count: 546
allele frequency: 4.733009708737864e-2
allele num: 11536
num of homozygotes: 16

Other
type: Population
allele count: 95
allele frequency: 1.048565121412803e-1
allele num: 906
num of homozygotes: 10

East Asian
type: Population
allele count: 1493
allele frequency: 1.740904850746269e-1
allele num: 8576
num of homozygotes: 125

African
type: Population
allele count: 3323
allele frequency: 3.237529228371006e-1
allele num: 10264
num of homozygotes: 554

South Asian
type: Population
allele count: 4565
allele frequency: 2.781840341255332e-1
allele num: 16410
num of homozygotes: 690

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.5e0

QD
type: SiteQuality
SIO_000300: 1.779e1

DP
type: SiteQuality
SIO_000300: 2.016318e6

MQRankSum
type: SiteQuality
SIO_000300: 4.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.319e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2753
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2475
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35643
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9024
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5394
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 394
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 854
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160362032954282e-4
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.887836e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.13e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.13e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.66e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

QD
type: SiteQuality
SIO_000300: 1.232e1

GenotypeQuality
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35786
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2450
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5394
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2729
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1607
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.510871199591014e-5
allele num: 66506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.88954e6

QD
type: SiteQuality
SIO_000300: 1.242e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.919999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.870000000000001e-1

FS
type: SiteQuality
SIO_000300: 7.252e0

MQRankSum
type: SiteQuality
SIO_000300: -1.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.46e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.49e-1

GenotypeQuality
all individuals: 36598
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5395
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2455
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.158480074142725e-4
allele num: 8632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.022e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.68e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.04e-1

FS
type: SiteQuality
SIO_000300: 3.571e0

QD
type: SiteQuality
SIO_000300: 1.476e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.29e0

VQSLOD
type: SiteQuality
SIO_000300: 2.15e0

DP
type: SiteQuality
SIO_000300: 1.893238e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.33e-1

GenotypeQuality
all individuals: 238
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2717
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36787
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8982
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502403846153846e-5
allele num: 66560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.895008e6

VQSLOD
type: SiteQuality
SIO_000300: -3.098e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.327e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-2

QD
type: SiteQuality
SIO_000300: 2.953e1

GenotypeQuality
all individuals: 845
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2443
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 56
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 124
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GenotypeQuality
all individuals: 5392
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2703
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.079766536964981e-5
allele num: 16448
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66612
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.928e1

MQRankSum
type: SiteQuality
SIO_000300: 3.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.31e-2

FS
type: SiteQuality
SIO_000300: 9.661e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.751e0

QD
type: SiteQuality
SIO_000300: 1.068e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.47e-1

DP
type: SiteQuality
SIO_000300: 1.900308e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.391e-1

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2445
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 83
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variant carriers: 0

GenotypeQuality
all individuals: 584
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variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
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variant carriers: 0

GenotypeQuality
all individuals: 2707
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9039
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1591
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5392
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66620
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.078288353999514e-5
allele num: 16452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.61e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.143e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.09e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.90074e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.19e0

QD
type: SiteQuality
SIO_000300: 1.046e1

GenotypeQuality
all individuals: 82
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2448
bin: 7.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 150
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
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GenotypeQuality
all individuals: 1589
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2711
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37530
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500645277469312e-5
allele num: 66638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e0

VQSLOD
type: SiteQuality
SIO_000300: 1.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.915e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.251e1

MQRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

FS
type: SiteQuality
SIO_000300: 7.02e-1

DP
type: SiteQuality
SIO_000300: 1.90251e6

GenotypeQuality
all individuals: 5391
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 115
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variant carriers: 0

GenotypeQuality
all individuals: 9049
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.066488716330988e-5
allele num: 16484
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.11e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.32e0

MQRankSum
type: SiteQuality
SIO_000300: 8.77e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.497e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.1e-1

DP
type: SiteQuality
SIO_000300: 1.904487e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.89e0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 12
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1587
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66660
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.904926e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.13e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.531e-1

FS
type: SiteQuality
SIO_000300: 9.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.4e-1

MQ
type: SiteQuality
SIO_000300: 5.852e1

MQRankSum
type: SiteQuality
SIO_000300: 2.91e-1

QD
type: SiteQuality
SIO_000300: 1.628e1

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 9.25e1
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
all individuals: 3
bin: 1.25e1
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GenotypeQuality
all individuals: 9
bin: 4.25e1
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GenotypeQuality
all individuals: 94
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GenotypeQuality
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GenotypeQuality
all individuals: 31
bin: 3.25e1
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GenotypeQuality
all individuals: 13
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Latino
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allele num: 11574
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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Other
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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FS
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MQ
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DP
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VQSLOD
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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East Asian
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allele num: 8654
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Other
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InbreedingCoeff
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ReadPosRankSum
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FS
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BaseQRankSum
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VQSLOD
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MQ
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ClippingRankSum
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MQRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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East Asian
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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Other
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European (Non-Finnish)
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FS
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VQSLOD
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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East Asian
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allele frequency: 0.0e0
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Latino
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South Asian
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allele count: 1
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Other
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MQRankSum
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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QD
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FS
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BaseQRankSum
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DP
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InbreedingCoeff
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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East Asian
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Other
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African
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Latino
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European (Non-Finnish)
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QD
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MQRankSum
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VQSLOD
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ClippingRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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MQ
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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African
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European (Finnish)
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Other
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European (Non-Finnish)
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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DP
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MQ
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VQSLOD
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InbreedingCoeff
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QD
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FS
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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Other
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East Asian
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MQRankSum
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ReadPosRankSum
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DP
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BaseQRankSum
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InbreedingCoeff
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MQ
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ClippingRankSum
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VQSLOD
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QD
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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East Asian
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African
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South Asian
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VQSLOD
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ClippingRankSum
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DP
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QD
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MQRankSum
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FS
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MQ
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

ReadPosRankSum
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SIO_000300: 9.46e-1

FS
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QD
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ClippingRankSum
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MQRankSum
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DP
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InbreedingCoeff
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SIO_000300: 3.0e-4

VQSLOD
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

MQ
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DP
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InbreedingCoeff
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MQRankSum
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VQSLOD
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QD
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FS
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
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allele frequency: 2.997332374186974e-5
allele num: 66726
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQ
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ClippingRankSum
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QD
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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FS
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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MQRankSum
type: SiteQuality
SIO_000300: 8.3e-2

MQ
type: SiteQuality
SIO_000300: 5.955e1

FS
type: SiteQuality
SIO_000300: 7.07e-1

DP
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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QD
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
type: Population
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.906582e6

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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FS
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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East Asian
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South Asian
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African
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Other
type: Population
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MQ
type: SiteQuality
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InbreedingCoeff
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FS
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MQRankSum
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QD
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DP
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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African
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European (Non-Finnish)
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East Asian
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Latino
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Other
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QD
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InbreedingCoeff
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ReadPosRankSum
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MQ
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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FS
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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European (Finnish)
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Other
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African
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Latino
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South Asian
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MQ
type: SiteQuality
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VQSLOD
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QD
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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South Asian
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African
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Other
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FS
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DP
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MQ
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

GenotypeQuality
all individuals: 302
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1613
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5354
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1054
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5947
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1311
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8096
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.144654088050314e-4
allele num: 15900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.138952164009112e-3
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

DP
type: SiteQuality
SIO_000300: 1.553156e6

MQRankSum
type: SiteQuality
SIO_000300: 1.09e-1

MQ
type: SiteQuality
SIO_000300: 6.011e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.264e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.81e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.57e0

QD
type: SiteQuality
SIO_000300: 1.588e1

GenotypeQuality
all individuals: 596
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3589
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6104
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variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7896
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11200
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15748
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.189284005740711e-5
allele num: 62710
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.513122e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

QD
type: SiteQuality
SIO_000300: 1.192e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.6e-1

GenotypeQuality
all individuals: 697
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3411
bin: 4.25e1
variant carriers: 2

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 296

GenotypeQuality
all individuals: 4230
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1269
bin: 8.25e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7810
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.40861317610869e-5
allele num: 15604
num of homozygotes: 0

African
type: Population
allele count: 274
allele frequency: 2.891515407344871e-2
allele num: 9476
num of homozygotes: 2

Latino
type: Population
allele count: 19
allele frequency: 1.707097933513028e-3
allele num: 11130
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.141552511415525e-3
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.040912161075552e-5
allele num: 62182
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.18e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.36e0

DP
type: SiteQuality
SIO_000300: 1.504806e6

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.575e1

GenotypeQuality
all individuals: 582
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1889
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variant carriers: 0

GenotypeQuality
all individuals: 4488
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variant carriers: 0

GenotypeQuality
all individuals: 3315
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.42756138321121e-5
allele num: 15558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7724
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.498524e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

VQSLOD
type: SiteQuality
SIO_000300: -1.826e0

MQRankSum
type: SiteQuality
SIO_000300: -1.408e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.36e0

QD
type: SiteQuality
SIO_000300: 8.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.932e0

GenotypeQuality
all individuals: 639
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6117
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6150
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 787
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1376
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variant carriers: 0

GenotypeQuality
all individuals: 515
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variant carriers: 0

GenotypeQuality
all individuals: 6704
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5346
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11042
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7708
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.542257865515114e-4
allele num: 6484
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.42e0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.498422e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

QD
type: SiteQuality
SIO_000300: 1.998e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 9.4e-2

GenotypeQuality
all individuals: 272
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
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variant carriers: 0

GenotypeQuality
all individuals: 2793
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 16368
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2208
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variant carriers: 0

GenotypeQuality
all individuals: 2772
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variant carriers: 0

GenotypeQuality
all individuals: 7208
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variant carriers: 0

GenotypeQuality
all individuals: 700
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variant carriers: 0

GenotypeQuality
all individuals: 1924
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variant carriers: 0

GenotypeQuality
all individuals: 5028
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1327
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2639
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11406
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.081347576006573e-4
allele num: 9736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

VQSLOD
type: SiteQuality
SIO_000300: 2.62e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.883619e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

QD
type: SiteQuality
SIO_000300: 1.233e1

GenotypeQuality
all individuals: 2084
bin: 7.25e1
variant carriers: 148

GenotypeQuality
all individuals: 1445
bin: 3.25e1
variant carriers: 89

GenotypeQuality
all individuals: 326
bin: 1.75e1
variant carriers: 45

GenotypeQuality
all individuals: 1683
bin: 4.75e1
variant carriers: 148

GenotypeQuality
all individuals: 985
bin: 4.25e1
variant carriers: 85

GenotypeQuality
all individuals: 315
bin: 2.5e0
variant carriers: 13

GenotypeQuality
all individuals: 2272
bin: 9.25e1
variant carriers: 157

GenotypeQuality
all individuals: 230
bin: 1.25e1
variant carriers: 36

GenotypeQuality
all individuals: 1553
bin: 3.75e1
variant carriers: 103

GenotypeQuality
all individuals: 1073
bin: 5.25e1
variant carriers: 129

GenotypeQuality
all individuals: 2846
bin: 8.25e1
variant carriers: 231

GenotypeQuality
all individuals: 1441
bin: 8.75e1
variant carriers: 119

Latino
type: Population
allele count: 3190
allele frequency: 2.811563546624361e-1
allele num: 11346
num of homozygotes: 462

European (Non-Finnish)
type: Population
allele count: 9613
allele frequency: 1.490896119606687e-1
allele num: 64478
num of homozygotes: 751

Other
type: Population
allele count: 149
allele frequency: 1.765402843601896e-1
allele num: 844
num of homozygotes: 10

European (Finnish)
type: Population
allele count: 1368
allele frequency: 2.082825822168088e-1
allele num: 6568
num of homozygotes: 136

East Asian
type: Population
allele count: 1770
allele frequency: 2.093683463449255e-1
allele num: 8454
num of homozygotes: 193

African
type: Population
allele count: 1559
allele frequency: 1.598974358974359e-1
allele num: 9750
num of homozygotes: 108

South Asian
type: Population
allele count: 3189
allele frequency: 2.322651128914785e-1
allele num: 13730
num of homozygotes: 364

QD
type: SiteQuality
SIO_000300: 1.61e1

VQSLOD
type: SiteQuality
SIO_000300: 6.81e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.92e-1

DP
type: SiteQuality
SIO_000300: 1.944093e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.41e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.357e0

GenotypeQuality
all individuals: 92
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1866
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2168
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17377
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2917
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9194
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 344
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variant carriers: 0

GenotypeQuality
all individuals: 3326
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variant carriers: 0

GenotypeQuality
all individuals: 1776
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2011
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9758
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13744
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.546216408448527e-5
allele num: 64674
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.619e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.219e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.17e0

DP
type: SiteQuality
SIO_000300: 1.89225e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -4.092e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.79e-1

GenotypeQuality
all individuals: 4407
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
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variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14209
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variant carriers: 0

GenotypeQuality
all individuals: 5393
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variant carriers: 0

GenotypeQuality
all individuals: 3602
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2355
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 982
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9810
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.998880179171333e-5
allele num: 14288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

FS
type: SiteQuality
SIO_000300: 1.809e0

MQRankSum
type: SiteQuality
SIO_000300: 4.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.974e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.53e-1

DP
type: SiteQuality
SIO_000300: 1.954391e6

QD
type: SiteQuality
SIO_000300: 9.710000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: 9.409999999999999e-1

GenotypeQuality
all individuals: 856
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1938
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.59150876978175e-5
allele num: 65338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9816
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.648e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.57e0

QD
type: SiteQuality
SIO_000300: 1.343e1

VQSLOD
type: SiteQuality
SIO_000300: 6.72e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

DP
type: SiteQuality
SIO_000300: 1.960224e6

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.053435114503817e-5
allele num: 65500
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.803646754660499e-5
allele num: 14698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9836
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.611e0

FS
type: SiteQuality
SIO_000300: 7.428e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -8.079e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.253e0

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-2

QD
type: SiteQuality
SIO_000300: 8.24e0

DP
type: SiteQuality
SIO_000300: 1.972285e6

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15076
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521745746720638e-5
allele num: 65714
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.911e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 6.379e0

QD
type: SiteQuality
SIO_000300: 4.51e0

VQSLOD
type: SiteQuality
SIO_000300: -2.753e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

DP
type: SiteQuality
SIO_000300: 1.982952e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9956
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.211951795254069e-4
allele num: 16098
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66230
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.008696e6

MQRankSum
type: SiteQuality
SIO_000300: -2.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.15e0

QD
type: SiteQuality
SIO_000300: 1.486e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.79e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3672
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504890895410083e-5
allele num: 66450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10082
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.28e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.24e-2

FS
type: SiteQuality
SIO_000300: 2.62e0

DP
type: SiteQuality
SIO_000300: 2.019378e6

MQRankSum
type: SiteQuality
SIO_000300: -8.090000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.062e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.24e0

VQSLOD
type: SiteQuality
SIO_000300: 3.76e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.51653638003608e-5
allele num: 66520
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.022012e6

QD
type: SiteQuality
SIO_000300: 1.28e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.52e0

FS
type: SiteQuality
SIO_000300: 1.769e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.74e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.81e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.3e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503307276007216e-5
allele num: 66520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.022012e6

FS
type: SiteQuality
SIO_000300: 1.769e0

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

MQRankSum
type: SiteQuality
SIO_000300: -7.81e-1

MQ
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SIO_000300: 5.957e1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.52e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.74e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66550
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.068697657482704e-5
allele num: 16478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.057e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

DP
type: SiteQuality
SIO_000300: 2.023193e6

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 7.57e-1

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.169e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.25e-1

QD
type: SiteQuality
SIO_000300: 9.960000000000001e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 223
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GenotypeQuality
all individuals: 3230
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10138
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503081316699233e-5
allele num: 66530
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.308e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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QD
type: SiteQuality
SIO_000300: 1.385e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 1.0848e1

DP
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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European (Finnish)
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East Asian
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Latino
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European (Non-Finnish)
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South Asian
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MQ
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FS
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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African
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Other
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European (Non-Finnish)
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European (Finnish)
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MQRankSum
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BaseQRankSum
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DP
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VQSLOD
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ReadPosRankSum
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FS
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MQ
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InbreedingCoeff
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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Latino
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East Asian
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European (Finnish)
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European (Non-Finnish)
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BaseQRankSum
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MQ
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MQRankSum
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InbreedingCoeff
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DP
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FS
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VQSLOD
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QD
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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European (Finnish)
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Latino
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African
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South Asian
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MQRankSum
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VQSLOD
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MQ
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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South Asian
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European (Finnish)
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Latino
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East Asian
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ReadPosRankSum
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QD
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InbreedingCoeff
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DP
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MQ
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ClippingRankSum
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BaseQRankSum
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FS
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VQSLOD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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African
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Latino
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South Asian
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European (Finnish)
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MQ
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DP
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ReadPosRankSum
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FS
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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African
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East Asian
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Latino
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European (Non-Finnish)
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FS
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DP
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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QD
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ReadPosRankSum
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BaseQRankSum
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MQ
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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East Asian
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European (Non-Finnish)
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European (Finnish)
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VQSLOD
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ReadPosRankSum
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MQ
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QD
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MQRankSum
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BaseQRankSum
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FS
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DP
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InbreedingCoeff
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European (Finnish)
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Latino
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South Asian
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African
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European (Non-Finnish)
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East Asian
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QD
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ReadPosRankSum
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FS
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DP
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ClippingRankSum
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SIO_000300: -1.167e0

MQRankSum
type: SiteQuality
SIO_000300: 5.15e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

VQSLOD
type: SiteQuality
SIO_000300: 3.89e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.7e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10036
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.409434687860531e-5
allele num: 15602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.510300247689241e-5
allele num: 66212
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.999858e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.89e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.167e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.7e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

MQ
type: SiteQuality
SIO_000300: 5.958e1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.425083526085839e-5
allele num: 15564
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510345869204048e-5
allele num: 66210
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10026
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.64e0

QD
type: SiteQuality
SIO_000300: 6.51e0

VQSLOD
type: SiteQuality
SIO_000300: -6.011e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.179e0

DP
type: SiteQuality
SIO_000300: 1.99848e6

FS
type: SiteQuality
SIO_000300: 2.027e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

MQRankSum
type: SiteQuality
SIO_000300: -5.2e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.982032341784787e-5
allele num: 10018
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66194
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.981e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

QD
type: SiteQuality
SIO_000300: 9.949999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 5.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.37e-1

DP
type: SiteQuality
SIO_000300: 1.997096e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.044e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14970
num of homozygotes: 0

African
type: Population
allele count: 16
allele frequency: 1.60481444332999e-3
allele num: 9970
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65924
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.978344e6

QD
type: SiteQuality
SIO_000300: 1.418e1

VQSLOD
type: SiteQuality
SIO_000300: 6.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.04e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.91e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.43e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9968
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14940
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517128379403465e-5
allele num: 65914
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

DP
type: SiteQuality
SIO_000300: 1.977838e6

MQRankSum
type: SiteQuality
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FS
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SIO_000300: 0.0e0

BaseQRankSum
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VQSLOD
type: SiteQuality
SIO_000300: -4.333e-1

QD
type: SiteQuality
SIO_000300: 1.231e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9946
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518649009840846e-5
allele num: 65848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14798
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.512e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.01e-1

DP
type: SiteQuality
SIO_000300: 1.976061e6

VQSLOD
type: SiteQuality
SIO_000300: 2.11e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.25e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.58e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.66e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65840
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159017153453871e-4
allele num: 8628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14820
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9936
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

DP
type: SiteQuality
SIO_000300: 1.974781e6

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.939e1

VQSLOD
type: SiteQuality
SIO_000300: 7.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.02e-1

QD
type: SiteQuality
SIO_000300: 1.555e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2529
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65834
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9922
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.158748551564311e-4
allele num: 8630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.972561e6

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.783e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.386e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 101
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GenotypeQuality
all individuals: 3195
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9916
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519433555170632e-5
allele num: 65814
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.632e0

DP
type: SiteQuality
SIO_000300: 1.970643e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

MQ
type: SiteQuality
SIO_000300: 5.844e1

FS
type: SiteQuality
SIO_000300: 3.103e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.96e-1

QD
type: SiteQuality
SIO_000300: 1.121e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.37e-1

GenotypeQuality
all individuals: 105
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2518
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4886
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3197
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5443
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17693
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 13228
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.520450053215752e-5
allele num: 65770
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.1441647597254e-3
allele num: 874
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9900
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

DP
type: SiteQuality
SIO_000300: 1.968998e6

FS
type: SiteQuality
SIO_000300: 1.106e0

QD
type: SiteQuality
SIO_000300: 1.187e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.418e0

VQSLOD
type: SiteQuality
SIO_000300: 1.42e0

MQ
type: SiteQuality
SIO_000300: 5.9e1

MQRankSum
type: SiteQuality
SIO_000300: 7.75e-1