2-228356364-GTT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228356364
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228356362
    reference: chr 2
allele count: 13962
allele frequency: 1.430386230918963e-1
allele num: 97610
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.261+22_261+23delTT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.261+22_261+23delTT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.261+22_261+23delTT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.261+22_261+23delTT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.261+22_261+23delTT
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 6.25e1
  variant carriers: 753
genotype depth: GenotypeDepth
  all individuals: 6240
  bin: 2.75e1
  variant carriers: 1598
genotype depth: GenotypeDepth
  all individuals: 7440
  bin: 3.25e1
  variant carriers: 2207
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 6.75e1
  variant carriers: 454
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 7.25e1
  variant carriers: 362
genotype depth: GenotypeDepth
  all individuals: 4348
  bin: 5.25e1
  variant carriers: 1394
genotype depth: GenotypeDepth
  all individuals: 4789
  bin: 2.25e1
  variant carriers: 1121
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.5e0
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 1.25e1
  variant carriers: 213
genotype depth: GenotypeDepth
  all individuals: 2929
  bin: 1.75e1
  variant carriers: 624
genotype depth: GenotypeDepth
  all individuals: 7844
  bin: 3.75e1
  variant carriers: 2270
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 5.75e1
  variant carriers: 1039
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 8.25e1
  variant carriers: 213
genotype depth: GenotypeDepth
  all individuals: 5836
  bin: 4.75e1
  variant carriers: 1731
genotype depth: GenotypeDepth
  all individuals: 7229
  bin: 4.25e1
  variant carriers: 2169
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.75e1
  variant carriers: 162
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 9.75e1
  variant carriers: 963
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 9.25e1
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 7.75e1
  variant carriers: 253
genotype quality: GenotypeQuality
  all individuals: 3061
  bin: 2.5e0
  variant carriers: 839
genotype quality: GenotypeQuality
  all individuals: 22889
  bin: 9.75e1
  variant carriers: 4070
genotype quality: GenotypeQuality
  all individuals: 1158
  bin: 8.75e1
  variant carriers: 429
genotype quality: GenotypeQuality
  all individuals: 2417
  bin: 2.75e1
  variant carriers: 879
genotype quality: GenotypeQuality
  all individuals: 2519
  bin: 2.25e1
  variant carriers: 916
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 5.75e1
  variant carriers: 649
genotype quality: GenotypeQuality
  all individuals: 2730
  bin: 1.75e1
  variant carriers: 975
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 7.25e1
  variant carriers: 543
genotype quality: GenotypeQuality
  all individuals: 2991
  bin: 7.5e0
  variant carriers: 943
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 5.25e1
  variant carriers: 727
genotype quality: GenotypeQuality
  all individuals: 2290
  bin: 3.25e1
  variant carriers: 885
genotype quality: GenotypeQuality
  all individuals: 2785
  bin: 1.25e1
  variant carriers: 924
genotype quality: GenotypeQuality
  all individuals: 1893
  bin: 4.25e1
  variant carriers: 765
genotype quality: GenotypeQuality
  all individuals: 1684
  bin: 6.25e1
  variant carriers: 603
genotype quality: GenotypeQuality
  all individuals: 2196
  bin: 3.75e1
  variant carriers: 826
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
reference allele: GTT
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

2-228356364-G-GTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228356364
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228356366
    reference: chr 2
allele count: 58
allele frequency: 5.942014137895708e-4
allele num: 97610
alternate allele: GTT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.261+22_261+23dupTT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.261+22_261+23dupTT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.261+22_261+23dupTT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.261+22_261+23dupTT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.261+22_261+23dupTT
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4348
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4789
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2929
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6240
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5836
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7844
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 7440
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7229
  bin: 4.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 2290
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1893
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3061
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2991
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2196
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1954
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1320
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2417
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2730
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2519
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1684
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1468
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1158
  bin: 8.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD

2-228356364-GTTT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228356364
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228356361
    reference: chr 2
allele count: 64
allele frequency: 6.556705255609057e-4
allele num: 97610
alternate allele: G
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4789
  bin: 2.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6240
  bin: 2.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4348
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2929
  bin: 1.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 7229
  bin: 4.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 7440
  bin: 3.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7844
  bin: 3.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5836
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3061
  bin: 2.5e0
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 1893
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2290
  bin: 3.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1320
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1468
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 5.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2785
  bin: 1.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2519
  bin: 2.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 2991
  bin: 7.5e0
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 1684
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2730
  bin: 1.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2196
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1158
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2417
  bin: 2.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22889
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 5.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1954
  bin: 4.75e1
  variant carriers: 4
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 1
  allele frequency: 1.421666192777936e-4
  allele num: 7034
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 40
  allele frequency: 7.386342652435647e-4
  allele num: 54154
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 11
  allele frequency: 1.217622315696259e-3
  allele num: 9034
  num of homozygotes: 0
population: African
  type: Population
  allele count: 2
  allele frequency: 2.465483234714004e-4
  allele num: 8112
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
reference allele: GTTT
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

2-228356364-GTTTT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228356364
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228356360
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 97610
alternate allele: G
canonical: false
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6240
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5836
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7844
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4789
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2929
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7229
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1684
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2417
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2519
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2730
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2785
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1468
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1954
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2991
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1158
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2290
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3061
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1299
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1893
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22889
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1320
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2196
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8112
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 54154
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7034
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 740
  num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
reference allele: GTTTT
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

2-228356366-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228356366
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228356366
    reference: chr 2
allele count: 1
allele frequency: 9.823182711198428e-4
allele num: 1018
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.261+10T>A
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.261+10T>A
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.261+10T>A
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.261+10T>A
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.261+10T>A
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11647
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum

2-228356377-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228356377
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228356377
    reference: chr 2
allele count: 1
allele frequency: 8.361204013377926e-6
allele num: 119600
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.261+21T>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.261+21T>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.261+21T>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.261+21T>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.261+21T>G
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 10897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6726
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4815
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3119
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11934
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4714
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2361
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13579
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17242
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4138
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3607
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1711
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum

2-228356379-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228356379
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228356379
    reference: chr 2
allele count: 4
allele frequency: 3.404429162340204e-5
allele num: 117494
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.261+23T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.261+23T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.261+23T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.261+23T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.261+23T>C
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8930
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6594
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3917
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1853
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2241
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3049
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13476
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6474
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16563
  bin: 9.75e1
  variant carriers: 4
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-228356382-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228356382
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228356382
    reference: chr 2
allele count: 4
allele frequency: 3.354522735277839e-5
allele num: 119242
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.261+26A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.261+26A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.261+26A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.261+26A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.261+26A>G
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4409
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12044
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6183
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2416
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2783
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8616
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3057
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3493
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2102
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2232
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3943
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4526
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: A
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/2-228356390-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228356390
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228356390
    reference: chr 2
allele count: 4
allele frequency: 3.368137420006736e-5
allele num: 118760
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.261+34A>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.261+34A>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.261+34A>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.261+34A>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.261+34A>C
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10827
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4374
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3076
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2765
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6026
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8134
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11125
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1453
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4338
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2210
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3047
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2432
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3858
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3219
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1111
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum

2-228356391-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228356391
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228356389
    reference: chr 2
allele count: 1
allele frequency: 8.435259384226064e-6
allele num: 118550
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.261+40_261+41delTT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.261+40_261+41delTT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.261+40_261+41delTT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.261+40_261+41delTT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.261+40_261+41delTT
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8106
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3093
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10913
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6014
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4369
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10719
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13228
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3189
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16443
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3040
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1515
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4315
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1228
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: CTT
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum

2-228356392-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228356392
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228356392
    reference: chr 2
allele count: 2
allele frequency: 1.685317513819604e-5
allele num: 118672
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.261+36T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.261+36T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.261+36T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.261+36T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.261+36T>C
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5999
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4361
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10585
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10690
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8063
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1574
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3192
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12967
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4314
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3851
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3039
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2211
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1057
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

2-228356397-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228356397
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228356397
    reference: chr 2
allele count: 3
allele frequency: 2.536354413256679e-5
allele num: 118280
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.261+41T>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.261+41T>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.261+41T>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.261+41T>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.261+41T>G
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5975
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7953
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3373
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3086
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9531
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4762
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9890
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4341
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3036
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2407
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3848
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3165
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16441
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4309
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1854
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11158
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1181
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2205
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: T
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ

2-228356397-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228356397
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228356396
    reference: chr 2
allele count: 2
allele frequency: 1.69090294217112e-5
allele num: 118280
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.261+42delG
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.261+42delG
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.261+42delG
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.261+42delG
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.261+42delG
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4341
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3086
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4762
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3373
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5975
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9890
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9531
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7953
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1181
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11158
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4309
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1854
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2205
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2407
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1852
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5694
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3165
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: TG
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

2-228373308-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228373308
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228373308
    reference: chr 2
allele count: 1
allele frequency: 5.769674590353104e-5
allele num: 17332
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.262-11356A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.262-11356A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.-32A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.262-11356A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.262-11356A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.262-11356A>G
  variant of: http://identifiers.org/hgnc/5175
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3772
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

2-228373309-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228373309
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228373309
    reference: chr 2
allele count: 1
allele frequency: 5.771672630728385e-5
allele num: 17326
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.262-11355T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.262-11355T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.262-11355T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.262-11355T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.262-11355T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.-31T>C
  variant of: http://identifiers.org/hgnc/5175
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1296
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-228373363-CAAAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228373363
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228373359
    reference: chr 2
allele count: 1
allele frequency: 5.773672055427252e-5
allele num: 17320
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.25_27+1delAAAG
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.262-11300_262-11297delAAAG
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.262-11300_262-11297delAAAG
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.262-11300_262-11297delAAAG
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.262-11300_262-11297delAAAG
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.262-11300_262-11297delAAAG
  variant of: http://identifiers.org/hgnc/5175
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3637
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1444
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
hgvs: c.25_27+1delAAAG
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: CAAAG
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

2-228373365-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228373365
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228373365
    reference: chr 2
allele count: 1
allele frequency: 5.775672865888876e-5
allele num: 17314
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.26A>G
  hgvsp: ENSP00000405429.1:p.Lys9Arg
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.262-11299A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.262-11299A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.262-11299A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.262-11299A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.262-11299A>G
  variant of: http://identifiers.org/hgnc/5175
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1046
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3584
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Lys9Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

2-228373379-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228373379
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228373379
    reference: chr 2
allele count: 1
allele frequency: 5.79575750550597e-5
allele num: 17254
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.262-11285C>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.27+13C>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.262-11285C>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.262-11285C>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.262-11285C>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.262-11285C>G
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1441
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3157
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1322
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

2-228373379-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228373379
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228373379
    reference: chr 2
allele count: 7
allele frequency: 4.057030253854179e-4
allele num: 17254
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.262-11285C>T
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.262-11285C>T
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.27+13C>T
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.262-11285C>T
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.262-11285C>T
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.262-11285C>T
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1322
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3157
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

2-228373404-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228373404
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228373405
    reference: chr 2
allele count: 5636
allele frequency: 4.373738941486885e-1
allele num: 12886
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.262-11247dupT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.27+51dupT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.262-11247dupT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.262-11247dupT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.262-11247dupT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.262-11247dupT
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 1.25e1
  variant carriers: 434
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 3.25e1
  variant carriers: 1073
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.75e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 2.5e0
  variant carriers: 115
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 2.75e1
  variant carriers: 871
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 7.5e0
  variant carriers: 475
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 4.25e1
  variant carriers: 676
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.75e1
  variant carriers: 391
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 3.75e1
  variant carriers: 842
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.25e1
  variant carriers: 211
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 132
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 1.75e1
  variant carriers: 397
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 156
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 2.25e1
  variant carriers: 618
genotype quality: GenotypeQuality
  all individuals: 3725
  bin: 9.75e1
  variant carriers: 3438
genotype quality: GenotypeQuality
  all individuals: 1345
  bin: 2.5e0
  variant carriers: 199
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 2.25e1
  variant carriers: 213
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 4.25e1
  variant carriers: 172
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 9.25e1
  variant carriers: 108
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 8.25e1
  variant carriers: 122
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 7.5e0
  variant carriers: 245
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 1.25e1
  variant carriers: 289
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 5.75e1
  variant carriers: 164
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 7.75e1
  variant carriers: 140
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 6.25e1
  variant carriers: 143
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 1.75e1
  variant carriers: 244
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 5.25e1
  variant carriers: 145
num of homozygotes: 121
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum

2-228373404-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228373404
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228373403
    reference: chr 2
allele count: 696
allele frequency: 5.40121061617259e-2
allele num: 12886
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.27+51delT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.262-11247delT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.262-11247delT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.262-11247delT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.262-11247delT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.262-11247delT
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 7.5e0
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 3.25e1
  variant carriers: 133
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 2.75e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 3.75e1
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 1.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 1.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 4.25e1
  variant carriers: 112
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 2.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 7.5e0
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 2.25e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 6.25e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 1.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 1.75e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 5.25e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 3.75e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 5.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 3725
  bin: 9.75e1
  variant carriers: 237
genotype quality: GenotypeQuality
  all individuals: 1345
  bin: 2.5e0
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 8.25e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 4.25e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 2.75e1
  variant carriers: 34
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: AT
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

2-228373404-A-ATT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228373404
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228373406
    reference: chr 2
allele count: 458
allele frequency: 3.554244916964147e-2
allele num: 12886
alternate allele: ATT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.262-11248_262-11247dupTT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.27+50_27+51dupTT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.262-11248_262-11247dupTT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.262-11248_262-11247dupTT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.262-11248_262-11247dupTT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.262-11248_262-11247dupTT
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 1.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 2.75e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 7.5e0
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 4.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 1.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 3.25e1
  variant carriers: 120
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 3.75e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 2.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 5.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 3.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 2.25e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 8.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 1.25e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 3.75e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 7.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 4.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 4.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 2.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 5.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 1345
  bin: 2.5e0
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 7.5e0
  variant carriers: 34
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

2-228373404-A-ATTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228373404
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228373407
    reference: chr 2
allele count: 5
allele frequency: 3.880180040353872e-4
allele num: 12886
alternate allele: ATTT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.262-11249_262-11247dupTTT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.262-11249_262-11247dupTTT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.262-11249_262-11247dupTTT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.262-11249_262-11247dupTTT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.27+49_27+51dupTTT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.262-11249_262-11247dupTTT
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3725
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1345
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 6.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

2-228373407-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228373407
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228373408
    reference: chr 2
allele count: 1
allele frequency: 6.416837782340863e-5
allele num: 15584
alternate allele: TC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.262-11257_262-11256insC
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.27+41_27+42insC
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.262-11257_262-11256insC
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.262-11257_262-11256insC
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.262-11257_262-11256insC
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.262-11257_262-11256insC
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 971
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD

2-228384615-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228384615
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228384615
    reference: chr 2
allele count: 1
allele frequency: 1.080567081604426e-5
allele num: 92544
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.262-49T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.28-49T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.262-49T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.262-49T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.262-49T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.145-49T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.262-49T>C
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13617
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11718
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18368
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7241
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5587
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3468
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7408
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7905
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

2-228384631-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228384631
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228384632
    reference: chr 2
allele count: 3
allele frequency: 3.150664790270747e-5
allele num: 95218
alternate allele: AT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.262-30dupT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.262-30dupT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.28-30dupT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.262-30dupT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.262-30dupT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.262-30dupT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.145-30dupT
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22660
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13060
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11634
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3303
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1161
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2178
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3785
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4142
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ

2-228384637-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228384637
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228384637
    reference: chr 2
allele count: 1
allele frequency: 1.014733936761781e-5
allele num: 98548
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.262-27C>T
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.28-27C>T
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.262-27C>T
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.145-27C>T
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.262-27C>T
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.262-27C>T
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.262-27C>T
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30022
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10422
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8078
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4901
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2739
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3788
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2133
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

2-228384637-CAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228384637
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228384635
    reference: chr 2
allele count: 3
allele frequency: 3.044201810285343e-5
allele num: 98548
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.262-22_262-21delAT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.262-22_262-21delAT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.262-22_262-21delAT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.28-22_28-21delAT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.262-22_262-21delAT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.262-22_262-21delAT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.145-22_145-21delAT
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4901
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30022
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10422
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8078
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3280
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2739
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10279
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2474
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: CAT
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

2-228384641-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228384641
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228384641
    reference: chr 2
allele count: 114
allele frequency: 1.124349061069907e-3
allele num: 101392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.262-23T>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.262-23T>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.262-23T>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.262-23T>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.145-23T>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.262-23T>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.28-23T>G
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5416
  bin: 2.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 9270
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5927
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 3.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 33361
  bin: 2.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9253
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34314
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2642
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

2-228384641-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228384641
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228384640
    reference: chr 2
allele count: 8
allele frequency: 7.890168849613381e-5
allele num: 101392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.262-22delA
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.262-22delA
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.28-22delA
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.262-22delA
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.145-22delA
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.262-22delA
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.262-22delA
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5927
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5416
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33361
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9270
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1404
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2642
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: TA
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ

2-228384643-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228384643
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228384643
    reference: chr 2
allele count: 1
allele frequency: 9.748108866879825e-6
allele num: 102584
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.262-21T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.262-21T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.262-21T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.145-21T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.262-21T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.28-21T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.262-21T>C
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34271
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5911
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8576
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5204
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8608
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1274
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3273
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2434
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2701
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum

2-228384649-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228384649
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228384649
    reference: chr 2
allele count: 5
allele frequency: 4.622353702505316e-5
allele num: 108170
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.262-15T>A
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.28-15T>A
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.145-15T>A
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.262-15T>A
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.262-15T>A
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.262-15T>A
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.262-15T>A
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2887
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38968
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6575
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6229
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1090
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

2-228384654-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228384654
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228384654
    reference: chr 2
allele count: 1
allele frequency: 8.785647765809773e-6
allele num: 113822
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.145-10C>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.262-10C>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.28-10C>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.262-10C>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.262-10C>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.262-10C>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.262-10C>G
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7396
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42816
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3509
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45652
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD

2-228384669-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228384669
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228384669
    reference: chr 2
allele count: 4
allele frequency: 3.352329869259135e-5
allele num: 119320
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.267T>C
  hgvsp: ENST00000409979.2:c.267T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.33T>C
  hgvsp: ENST00000456594.1:c.33T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.267T>C
  hgvsp: ENST00000310078.8:c.267T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.267T>C
  hgvsp: ENST00000409315.1:c.267T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.267T>C
  hgvsp: ENST00000373671.3:c.267T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.150T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.267T>C
  hgvsp: ENST00000409171.1:c.267T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8507
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45415
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49339
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3296
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Cys89Cys
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP

2-228384692-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228384692
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228384692
    reference: chr 2
allele count: 1
allele frequency: 8.313519445321983e-6
allele num: 120286
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.290T>G
  hgvsp: ENSP00000362775.3:p.Phe97Cys
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.290T>G
  hgvsp: ENSP00000312059.7:p.Phe97Cys
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.290T>G
  hgvsp: ENSP00000387154.1:p.Phe97Cys
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.56T>G
  hgvsp: ENSP00000405429.1:p.Phe19Cys
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.290T>G
  hgvsp: ENSP00000387282.2:p.Phe97Cys
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.173T>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.290T>G
  hgvsp: ENSP00000387218.1:p.Phe97Cys
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45677
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1880
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8788
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49952
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3298
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Phe97Cys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: T
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

2-228384698-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228384698
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228384698
    reference: chr 2
allele count: 1
allele frequency: 8.308960382876895e-6
allele num: 120352
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.62A>G
  hgvsp: ENSP00000405429.1:p.Asp21Gly
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.296A>G
  hgvsp: ENSP00000387154.1:p.Asp99Gly
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.296A>G
  hgvsp: ENSP00000312059.7:p.Asp99Gly
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.296A>G
  hgvsp: ENSP00000387282.2:p.Asp99Gly
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.296A>G
  hgvsp: ENSP00000362775.3:p.Asp99Gly
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.296A>G
  hgvsp: ENSP00000387218.1:p.Asp99Gly
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.179A>G
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45635
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8831
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49916
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp99Gly
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

2-228384703-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228384703
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228384703
    reference: chr 2
allele count: 1
allele frequency: 8.30675172780436e-6
allele num: 120384
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.301T>G
  hgvsp: ENSP00000387218.1:p.Ser101Ala
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.301T>G
  hgvsp: ENSP00000362775.3:p.Ser101Ala
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.301T>G
  hgvsp: ENSP00000387154.1:p.Ser101Ala
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.301T>G
  hgvsp: ENSP00000387282.2:p.Ser101Ala
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.184T>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.301T>G
  hgvsp: ENSP00000312059.7:p.Ser101Ala
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.67T>G
  hgvsp: ENSP00000405429.1:p.Ser23Ala
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8858
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45604
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3646
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49916
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser101Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

2-228384711-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228384711
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228384711
    reference: chr 2
allele count: 1
allele frequency: 8.304682179812978e-6
allele num: 120414
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.309A>T
  hgvsp: ENST00000310078.8:c.309A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.309A>T
  hgvsp: ENST00000409979.2:c.309A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.309A>T
  hgvsp: ENST00000373671.3:c.309A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.192A>T
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.75A>T
  hgvsp: ENST00000456594.1:c.75A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.309A>T
  hgvsp: ENST00000409315.1:c.309A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.309A>T
  hgvsp: ENST00000409171.1:c.309A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3303
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala103Ala
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

2-228384724-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228384724
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228384724
    reference: chr 2
allele count: 1
allele frequency: 8.306613725848521e-6
allele num: 120386
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.322A>G
  hgvsp: ENSP00000387282.2:p.Arg108Gly
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.322A>G
  hgvsp: ENSP00000387154.1:p.Arg108Gly
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.322A>G
  hgvsp: ENSP00000312059.7:p.Arg108Gly
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.322A>G
  hgvsp: ENSP00000362775.3:p.Arg108Gly
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.88A>G
  hgvsp: ENSP00000405429.1:p.Arg30Gly
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.322A>G
  hgvsp: ENSP00000387218.1:p.Arg108Gly
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.205A>G
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45297
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8966
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg108Gly
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

2-228384729-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228384729
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228384729
    reference: chr 2
allele count: 1
allele frequency: 8.307993951780402e-6
allele num: 120366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.93T>A
  hgvsp: ENSP00000405429.1:p.Asp31Glu
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.327T>A
  hgvsp: ENSP00000387282.2:p.Asp109Glu
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.327T>A
  hgvsp: ENSP00000387154.1:p.Asp109Glu
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.327T>A
  hgvsp: ENSP00000387218.1:p.Asp109Glu
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.210T>A
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.327T>A
  hgvsp: ENSP00000362775.3:p.Asp109Glu
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.327T>A
  hgvsp: ENSP00000312059.7:p.Asp109Glu
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8996
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45227
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp109Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

2-228384735-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228384735
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228384735
    reference: chr 2
allele count: 4688
allele frequency: 3.895629051022104e-2
allele num: 120340
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.333A>G
  hgvsp: ENST00000310078.8:c.333A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.333A>G
  hgvsp: ENST00000409315.1:c.333A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.333A>G
  hgvsp: ENST00000409979.2:c.333A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.99A>G
  hgvsp: ENST00000456594.1:c.99A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.333A>G
  hgvsp: ENST00000373671.3:c.333A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.333A>G
  hgvsp: ENST00000409171.1:c.333A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.216A>G
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 4.25e1
  variant carriers: 298
genotype depth: GenotypeDepth
  all individuals: 41855
  bin: 2.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 3.25e1
  variant carriers: 209
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 9.75e1
  variant carriers: 634
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 401
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.25e1
  variant carriers: 255
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 5.25e1
  variant carriers: 395
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8480
  bin: 2.75e1
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 6.25e1
  variant carriers: 358
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 6.75e1
  variant carriers: 358
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 4.75e1
  variant carriers: 426
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 8.75e1
  variant carriers: 147
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 132
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 3.75e1
  variant carriers: 287
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.75e1
  variant carriers: 239
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.25e1
  variant carriers: 205
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3146
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 46383
  bin: 6.25e1
  variant carriers: 1
hgvs: p.Gln111Gln
num of homozygotes: 111
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

2-228384743-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228384743
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228384743
    reference: chr 2
allele count: 1
allele frequency: 8.318913882603488e-6
allele num: 120208
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.341A>G
  hgvsp: ENSP00000387154.1:p.Lys114Arg
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.341A>G
  hgvsp: ENSP00000387218.1:p.Lys114Arg
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.107A>G
  hgvsp: ENSP00000405429.1:p.Lys36Arg
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.341A>G
  hgvsp: ENSP00000312059.7:p.Lys114Arg
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.341A>G
  hgvsp: ENSP00000362775.3:p.Lys114Arg
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.341A>G
  hgvsp: ENSP00000387282.2:p.Lys114Arg
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.224A>G
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10558
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3739
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Lys114Arg
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

2-228384748-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228384748
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228384748
    reference: chr 2
allele count: 1
allele frequency: 8.324592511196577e-6
allele num: 120126
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.346T>A
  hgvsp: ENSP00000387282.2:p.Phe116Ile
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.346T>A
  hgvsp: ENSP00000387154.1:p.Phe116Ile
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.346T>A
  hgvsp: ENSP00000362775.3:p.Phe116Ile
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.346T>A
  hgvsp: ENSP00000387218.1:p.Phe116Ile
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.112T>A
  hgvsp: ENSP00000405429.1:p.Phe38Ile
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.346T>A
  hgvsp: ENSP00000312059.7:p.Phe116Ile
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.229T>A
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42245
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3717
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Phe116Ile
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

2-228384753-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228384753
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228384753
    reference: chr 2
allele count: 3
allele frequency: 2.500125006250312e-5
allele num: 119994
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.351A>G
  hgvsp: ENST00000310078.8:c.351A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.351A>G
  hgvsp: ENST00000409171.1:c.351A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.351A>G
  hgvsp: ENST00000409979.2:c.351A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.117A>G
  hgvsp: ENST00000456594.1:c.117A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.234A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.351A>G
  hgvsp: ENST00000409315.1:c.351A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.351A>G
  hgvsp: ENST00000373671.3:c.351A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10536
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3422
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 901
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu117Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/2-228384755-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228384755
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228384755
    reference: chr 2
allele count: 1
allele frequency: 8.339588024351597e-6
allele num: 119910
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.353A>C
  hgvsp: ENSP00000312059.7:p.Gln118Pro
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.353A>C
  hgvsp: ENSP00000387218.1:p.Gln118Pro
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.353A>C
  hgvsp: ENSP00000387282.2:p.Gln118Pro
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.119A>C
  hgvsp: ENSP00000405429.1:p.Gln40Pro
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.236A>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.353A>C
  hgvsp: ENSP00000362775.3:p.Gln118Pro
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.353A>C
  hgvsp: ENSP00000387154.1:p.Gln118Pro
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41887
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1046
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48620
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gln118Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

2-228384767-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228384767
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228384767
    reference: chr 2
allele count: 2
allele frequency: 1.679656006449879e-5
allele num: 119072
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.365A>G
  hgvsp: ENSP00000387282.2:p.Glu122Gly
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.248A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.131A>G
  hgvsp: ENSP00000405429.1:p.Glu44Gly
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.365A>G
  hgvsp: ENSP00000387154.1:p.Glu122Gly
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.365A>G
  hgvsp: ENSP00000362775.3:p.Glu122Gly
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.365A>G
  hgvsp: ENSP00000312059.7:p.Glu122Gly
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.365A>G
  hgvsp: ENSP00000387218.1:p.Glu122Gly
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10368
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40698
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3513
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1947
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu122Gly
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

2-228384795-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228384795
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228384795
    reference: chr 2
allele count: 1
allele frequency: 8.775778850372971e-6
allele num: 113950
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.260+16G>A
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.377+16G>A
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.143+16G>A
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.377+16G>A
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.377+16G>A
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.377+16G>A
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.377+16G>A
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9797
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29240
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2107
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8508
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1875
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3432
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2922
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2434
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

2-228384795-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228384795
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228384795
    reference: chr 2
allele count: 11
allele frequency: 9.653356735410268e-5
allele num: 113950
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.377+16G>T
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.377+16G>T
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.377+16G>T
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.377+16G>T
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.143+16G>T
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.377+16G>T
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.260+16G>T
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8508
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9797
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2107
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29240
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3117
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1875
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8128
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-228384802-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228384802
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228384802
    reference: chr 2
allele count: 1
allele frequency: 8.88083693007229e-6
allele num: 112602
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.377+23G>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.377+23G>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.377+23G>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.260+23G>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.143+23G>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.377+23G>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.377+23G>C
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5829
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7754
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12632
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4603
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27298
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9493
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3024
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/2-228384810-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228384810
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228384810
    reference: chr 2
allele count: 1
allele frequency: 8.985694773919919e-6
allele num: 111288
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.377+31C>A
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.377+31C>A
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.260+31C>A
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.143+31C>A
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.377+31C>A
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.377+31C>A
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.377+31C>A
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9331
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19696
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6623
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14565
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10135
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4020
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1251
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

2-228384815-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228384815
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228384815
    reference: chr 2
allele count: 2
allele frequency: 1.818214876634121e-5
allele num: 109998
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.377+36C>T
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.377+36C>T
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.143+36C>T
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.260+36C>T
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.377+36C>T
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.377+36C>T
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.377+36C>T
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12027
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4338
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14806
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6077
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16879
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6903
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1770
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2323
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10153
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1079
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4271
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum

http://identifiers.org/exac.variant/2-228384818-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228384818
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228384818
    reference: chr 2
allele count: 1
allele frequency: 9.121590805436469e-6
allele num: 109630
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.377+39A>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.143+39A>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.377+39A>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.377+39A>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.377+39A>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.377+39A>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.260+39A>C
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4664
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15611
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13727
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5437
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14728
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4405
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16302
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6145
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2297
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/2-228384821-CACA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228384821
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228384818
    reference: chr 2
allele count: 1
allele frequency: 9.237875288683602e-6
allele num: 108250
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.260+43_260+45delACA
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.377+43_377+45delACA
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.377+43_377+45delACA
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.377+43_377+45delACA
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.143+43_143+45delACA
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.377+43_377+45delACA
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.377+43_377+45delACA
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14955
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5073
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14894
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14395
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4851
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1085
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4472
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7393
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9429
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
reference allele: CACA
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/2-228384824-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228384824
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228384824
    reference: chr 2
allele count: 1
allele frequency: 9.386674676629058e-6
allele num: 106534
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.377+45A>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.377+45A>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.377+45A>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.260+45A>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.143+45A>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.377+45A>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.377+45A>C
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14773
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15083
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4546
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5483
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14227
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1900
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1486
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3510
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7334
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

2-228384824-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228384824
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228384824
    reference: chr 2
allele count: 89
allele frequency: 8.354140462199861e-4
allele num: 106534
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.377+45A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.260+45A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.377+45A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.377+45A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.377+45A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.377+45A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.143+45A>G
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15083
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4546
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 5483
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14773
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 14227
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 8831
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11129
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4466
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1341
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6692
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1486
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

2-228384824-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228384824
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228384824
    reference: chr 2
allele count: 1
allele frequency: 9.386674676629058e-6
allele num: 106534
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.377+45A>T
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.377+45A>T
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.260+45A>T
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.377+45A>T
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.143+45A>T
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.377+45A>T
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.377+45A>T
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5483
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15083
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4546
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14773
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2992
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4122
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6692
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8831
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4466
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7334
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1900
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ

2-228384826-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228384826
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228384826
    reference: chr 2
allele count: 1
allele frequency: 9.387732111676462e-6
allele num: 106522
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.377+47A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.377+47A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.377+47A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.377+47A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.143+47A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.377+47A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.260+47A>G
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5593
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4478
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14679
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14218
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15176
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8839
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1382
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7372
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2049
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1499
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3023
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4485
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

2-228384827-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228384827
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228384827
    reference: chr 2
allele count: 4
allele frequency: 3.771023455765895e-5
allele num: 106072
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.377+48T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.143+48T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.377+48T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.260+48T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.377+48T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.377+48T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.377+48T>C
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4437
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15214
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14147
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5690
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14652
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1085
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3434
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2138
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3057
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8556
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 9.25e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

2-228384828-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228384828
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228384828
    reference: chr 2
allele count: 1
allele frequency: 9.575058886612153e-6
allele num: 104438
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.143+49T>A
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.377+49T>A
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.377+49T>A
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.260+49T>A
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.377+49T>A
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.377+49T>A
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.377+49T>A
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13944
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5963
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15004
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14591
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7370
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4355
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6742
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7734
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1555
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4666
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1295
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3728
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

2-228384830-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228384830
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228384830
    reference: chr 2
allele count: 2
allele frequency: 1.906105255132189e-5
allele num: 104926
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.377+51A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.377+51A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.377+51A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.260+51A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.377+51A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.143+51A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.377+51A>G
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14030
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14501
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5981
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2716
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3587
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7451
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4655
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3432
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4356
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1273
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

2-228388434-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228388434
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228388434
    reference: chr 2
allele count: 1
allele frequency: 8.636473555117974e-6
allele num: 115788
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.378-45A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.378-45A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.378-45A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.378-45A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.261-45A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.378-45A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.144-45A>G
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18203
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8275
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8093
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9720
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1139
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3097
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5871
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2491
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3415
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2516
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7427
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3961
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/2-228388438-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228388438
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228388438
    reference: chr 2
allele count: 1
allele frequency: 8.622324923692425e-6
allele num: 115978
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.261-41C>A
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.378-41C>A
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.144-41C>A
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.378-41C>A
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.378-41C>A
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.378-41C>A
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.378-41C>A
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6956
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4075
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22663
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3383
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1739
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1388
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21058
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2579
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3125
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2929
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

2-228388438-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228388438
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228388438
    reference: chr 2
allele count: 2
allele frequency: 1.724464984738485e-5
allele num: 115978
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.378-41C>T
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.378-41C>T
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.144-41C>T
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.378-41C>T
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.261-41C>T
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.378-41C>T
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.378-41C>T
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6956
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22663
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4075
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5319
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1154
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6389
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2929
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1739
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3125
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2905
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2602
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/2-228388441-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228388441
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228388441
    reference: chr 2
allele count: 1
allele frequency: 8.594166279929183e-6
allele num: 116358
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.378-38A>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.378-38A>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.261-38A>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.144-38A>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.378-38A>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.378-38A>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.378-38A>C
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11042
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24994
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5502
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5541
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3048
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7454
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1998
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1480
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2721
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-228388442-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228388442
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228388443
    reference: chr 2
allele count: 1
allele frequency: 8.594609460946094e-6
allele num: 116352
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.378-36dupA
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.378-36dupA
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.144-36dupA
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.378-36dupA
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.378-36dupA
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.261-36dupA
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.378-36dupA
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2519
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5655
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11347
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5015
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1485
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7457
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6712
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1756
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

2-228388443-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228388443
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228388444
    reference: chr 2
allele count: 18
allele frequency: 1.682683318999364e-4
allele num: 106972
alternate allele: AT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.378-27dupT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.378-27dupT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.378-27dupT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.261-27dupT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.144-27dupT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.378-27dupT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.378-27dupT
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8009
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13117
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3846
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20101
  bin: 2.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2484
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2266
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7097
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 901
  bin: 1.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1645
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2684
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2942
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1282
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

2-228388443-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228388443
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228388443
    reference: chr 2
allele count: 2
allele frequency: 1.869648132221516e-5
allele num: 106972
alternate allele: T
canonical: false
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 20101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3846
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8009
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13117
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2978
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2368
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1336
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2942
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7097
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 16550
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 901
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1282
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2833
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2684
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5218
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2098
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1645
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1443
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2484
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2266
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 59218
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 13148
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7714
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 9322
  num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD

2-228388443-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228388443
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228388442
    reference: chr 2
allele count: 141
allele frequency: 1.318101933216169e-3
allele num: 106972
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.378-27delT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.378-27delT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.378-27delT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.378-27delT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.378-27delT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.261-27delT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.144-27delT
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 1.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3846
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20101
  bin: 2.25e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8009
  bin: 3.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13117
  bin: 2.75e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1336
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 7.5e0
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 2098
  bin: 2.75e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 1.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 2684
  bin: 3.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 7097
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2978
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1443
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2942
  bin: 2.5e0
  variant carriers: 8
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
reference allele: AT
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

2-228388458-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228388458
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228388458
    reference: chr 2
allele count: 23
allele frequency: 1.920507682030728e-4
allele num: 119760
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.144-21A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.378-21A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.378-21A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.261-21A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.378-21A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.378-21A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.378-21A>G
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3872
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 14064
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24331
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 9124
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7934
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2337
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3585
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 798
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25058
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

2-228388460-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228388460
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228388460
    reference: chr 2
allele count: 1
allele frequency: 8.330278897737497e-6
allele num: 120044
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.261-19T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.378-19T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.378-19T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.144-19T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.378-19T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.378-19T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.378-19T>C
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9191
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14199
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24476
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8956
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4876
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4120
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1882
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

2-228388461-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228388461
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228388462
    reference: chr 2
allele count: 3
allele frequency: 2.497169874142639e-5
allele num: 120136
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.378-12dupT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.144-12dupT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.378-12dupT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.378-12dupT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.378-12dupT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.261-12dupT
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.378-12dupT
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9251
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24482
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25478
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3604
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4870
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4125
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

2-228388465-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228388465
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228388465
    reference: chr 2
allele count: 1
allele frequency: 8.306613725848521e-6
allele num: 120386
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.378-14T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.261-14T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.378-14T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.144-14T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.378-14T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.378-14T>C
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.378-14T>C
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3899
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14316
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24662
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25761
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3630
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8007
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

2-228388468-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 228388468
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 228388468
    reference: chr 2
allele count: 1
allele frequency: 8.290636555074699e-6
allele num: 120618
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000362775
  ensembl transcript: ENST00000373671
  gene symbol: AGFG1
  hgvsc: ENST00000373671.3:c.378-11A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl transcript: ENST00000486932
  gene symbol: AGFG1
  hgvsc: ENST00000486932.1:n.261-11A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000312059
  ensembl transcript: ENST00000310078
  gene symbol: AGFG1
  hgvsc: ENST00000310078.8:c.378-11A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387282
  ensembl transcript: ENST00000409979
  gene symbol: AGFG1
  hgvsc: ENST00000409979.2:c.378-11A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000405429
  ensembl transcript: ENST00000456594
  gene symbol: AGFG1
  hgvsc: ENST00000456594.1:c.144-11A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387218
  ensembl transcript: ENST00000409171
  gene symbol: AGFG1
  hgvsc: ENST00000409171.1:c.378-11A>G
  variant of: http://identifiers.org/hgnc/5175
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173744
  ensembl protein: ENSP00000387154
  ensembl transcript: ENST00000409315
  gene symbol: AGFG1
  hgvsc: ENST00000409315.1:c.378-11A>G
  variant of: http://identifiers.org/hgnc/5175
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 1320
bin: 7.75e1
variant carriers: 501

GenotypeQuality
all individuals: 1468
bin: 6.75e1
variant carriers: 586

GenotypeQuality
all individuals: 1299
bin: 8.25e1
variant carriers: 450

GenotypeQuality
all individuals: 1043
bin: 9.25e1
variant carriers: 397

GenotypeQuality
all individuals: 1954
bin: 4.75e1
variant carriers: 770

European (Finnish)
type: Population
allele count: 725
allele frequency: 1.328325393917186e-1
allele num: 5458
num of homozygotes: 0

Other
type: Population
allele count: 109
allele frequency: 1.472972972972973e-1
allele num: 740
num of homozygotes: 0

Latino
type: Population
allele count: 1628
allele frequency: 1.802081027230463e-1
allele num: 9034
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7598
allele frequency: 1.403035786830151e-1
allele num: 54154
num of homozygotes: 0

East Asian
type: Population
allele count: 1046
allele frequency: 1.487062837645721e-1
allele num: 7034
num of homozygotes: 0

South Asian
type: Population
allele count: 1637
allele frequency: 1.251720446551461e-1
allele num: 13078
num of homozygotes: 0

African
type: Population
allele count: 1219
allele frequency: 1.502712031558185e-1
allele num: 8112
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.878e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

DP
type: SiteQuality
SIO_000300: 2.646494e6

VQSLOD
type: SiteQuality
SIO_000300: 2.37e0

QD
type: SiteQuality
SIO_000300: 1.146e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.041e0

GenotypeQuality
all individuals: 2785
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1299
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1841
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1043
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 22889
bin: 9.75e1
variant carriers: 26

African
type: Population
allele count: 32
allele frequency: 3.944773175542407e-3
allele num: 8112
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.82321455880104e-4
allele num: 13078
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 740
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.264998578333807e-4
allele num: 7034
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.585219928352476e-4
allele num: 54154
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5458
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 4.427717511622758e-4
allele num: 9034
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

DP
type: SiteQuality
SIO_000300: 2.646494e6

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.878e-1

QD
type: SiteQuality
SIO_000300: 1.146e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.041e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.37e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5458
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 7.64642911760208e-4
allele num: 13078
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 740
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.646494e6

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.878e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.041e0

QD
type: SiteQuality
SIO_000300: 1.146e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9034
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13078
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5458
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.37e0

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

QD
type: SiteQuality
SIO_000300: 1.146e1

DP
type: SiteQuality
SIO_000300: 2.646494e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.878e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.041e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

GenotypeQuality
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5625e-3
allele num: 640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.67e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.738e0

VQSLOD
type: SiteQuality
SIO_000300: 3.29e0

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.008e-1

MQ
type: SiteQuality
SIO_000300: 5.924e1

QD
type: SiteQuality
SIO_000300: 6.92e0

DP
type: SiteQuality
SIO_000300: 7.33755e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.842e0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16260
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.517865274278255e-5
allele num: 65882
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9874
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.146e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

QD
type: SiteQuality
SIO_000300: 5.98e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.786e0

VQSLOD
type: SiteQuality
SIO_000300: -3.762e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.399e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

DP
type: SiteQuality
SIO_000300: 2.477791e6

MQRankSum
type: SiteQuality
SIO_000300: -1.815e0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64616
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 15874
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Other
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allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
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allele count: 4
allele frequency: 3.506926179203928e-4
allele num: 11406
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9698
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.913e1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
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SIO_000300: 2.465644e6

VQSLOD
type: SiteQuality
SIO_000300: 5.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.254e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.977e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.98e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
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allele count: 4
allele frequency: 4.689331770222743e-4
allele num: 8530
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65692
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.572e1

DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.6357e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.821e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.66e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.107e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
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allele count: 4
allele frequency: 4.721435316336166e-4
allele num: 8472
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9756
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65408
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.298e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.92e0

VQSLOD
type: SiteQuality
SIO_000300: -1.542e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

MQRankSum
type: SiteQuality
SIO_000300: -9.77e-1

DP
type: SiteQuality
SIO_000300: 2.35822e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 1.0184e1

MQ
type: SiteQuality
SIO_000300: 6.074e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16044
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65334
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9732
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.686587908269631e-5
allele num: 11512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.708e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.53e-1

QD
type: SiteQuality
SIO_000300: 7.27e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.37e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

DP
type: SiteQuality
SIO_000300: 2.353014e6

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65384
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8464
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.24285359184688e-4
allele num: 16092
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9726
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.35e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.42e-1

MQ
type: SiteQuality
SIO_000300: 5.882e1

VQSLOD
type: SiteQuality
SIO_000300: -2.149e-1

DP
type: SiteQuality
SIO_000300: 2.34687e6

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.812e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.601791630874954e-5
allele num: 65192
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16012
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East Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.322725e6

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 1.249063202598052e-4
allele num: 16012
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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DP
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5958
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European (Finnish)
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Other
type: Population
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allele frequency: 0.0e0
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Latino
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African
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allele frequency: 9.45179584120983e-4
allele num: 1058
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East Asian
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South Asian
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.11e-2

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
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QD
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
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East Asian
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African
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Other
type: Population
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allele frequency: 0.0e0
allele num: 212
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 5956
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South Asian
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allele frequency: 1.305483028720627e-4
allele num: 7660
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Latino
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allele num: 308
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MQRankSum
type: SiteQuality
SIO_000300: 1.3e-1

DP
type: SiteQuality
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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South Asian
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
type: Population
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allele frequency: 0.0e0
allele num: 298
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Other
type: Population
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allele frequency: 4.672897196261682e-3
allele num: 214
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ClippingRankSum
type: SiteQuality
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MQRankSum
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MQ
type: SiteQuality
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DP
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 1.331e0

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

QD
type: SiteQuality
SIO_000300: 1.28e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.95e-1

GenotypeQuality
all individuals: 370
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 751
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1443
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 298
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1040
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.677852348993289e-4
allele num: 5960
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7658
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1664
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.613e0

VQSLOD
type: SiteQuality
SIO_000300: -2.303e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

QD
type: SiteQuality
SIO_000300: 1.958e1

DP
type: SiteQuality
SIO_000300: 3.9147e5

FS
type: SiteQuality
SIO_000300: 1.331e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

MQ
type: SiteQuality
SIO_000300: 6.072e1

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 4.672897196261682e-3
allele num: 214
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1658
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1022
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5932
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.17e-2

DP
type: SiteQuality
SIO_000300: 3.86243e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.568e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.860000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.239e1

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1441
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.371544167228591e-4
allele num: 5932
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 480
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1022
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 3.01568154402895e-3
allele num: 1658
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.860000000000001e-1

FS
type: SiteQuality
SIO_000300: 5.97e-1

QD
type: SiteQuality
SIO_000300: 1.239e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.17e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.568e0

MQRankSum
type: SiteQuality
SIO_000300: 2.61e-1

DP
type: SiteQuality
SIO_000300: 3.86243e5

GenotypeQuality
all individuals: 177
bin: 7.25e1
variant carriers: 140

GenotypeQuality
all individuals: 220
bin: 4.75e1
variant carriers: 170

GenotypeQuality
all individuals: 263
bin: 2.75e1
variant carriers: 205

GenotypeQuality
all individuals: 280
bin: 3.75e1
variant carriers: 213

GenotypeQuality
all individuals: 212
bin: 3.25e1
variant carriers: 164

GenotypeQuality
all individuals: 149
bin: 8.75e1
variant carriers: 117

GenotypeQuality
all individuals: 185
bin: 6.75e1
variant carriers: 154

Other
type: Population
allele count: 71
allele frequency: 4.034090909090909e-1
allele num: 176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1585
allele frequency: 4.121164846593864e-1
allele num: 3846
num of homozygotes: 29

East Asian
type: Population
allele count: 92
allele frequency: 4.181818181818182e-1
allele num: 220
num of homozygotes: 3

Latino
type: Population
allele count: 58
allele frequency: 4.461538461538462e-1
allele num: 130
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 623
allele frequency: 4.540816326530612e-1
allele num: 1372
num of homozygotes: 46

South Asian
type: Population
allele count: 3011
allele frequency: 4.526458208057727e-1
allele num: 6652
num of homozygotes: 36

African
type: Population
allele count: 196
allele frequency: 4.0e-1
allele num: 490
num of homozygotes: 7

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.1e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.3e-2

DP
type: SiteQuality
SIO_000300: 2.84247e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.069e-1

QD
type: SiteQuality
SIO_000300: 8.82e0

MQ
type: SiteQuality
SIO_000300: 6.024e1

VQSLOD
type: SiteQuality
SIO_000300: 3.69e0

MQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

GenotypeQuality
all individuals: 149
bin: 8.75e1
variant carriers: 25

GenotypeQuality
all individuals: 135
bin: 9.25e1
variant carriers: 25

GenotypeQuality
all individuals: 212
bin: 3.25e1
variant carriers: 28

GenotypeQuality
all individuals: 166
bin: 7.75e1
variant carriers: 23

GenotypeQuality
all individuals: 177
bin: 7.25e1
variant carriers: 26

GenotypeQuality
all individuals: 220
bin: 4.75e1
variant carriers: 37

GenotypeQuality
all individuals: 185
bin: 6.75e1
variant carriers: 27

European (Non-Finnish)
type: Population
allele count: 284
allele frequency: 7.384295371814872e-2
allele num: 3846
num of homozygotes: 0

African
type: Population
allele count: 48
allele frequency: 9.795918367346938e-2
allele num: 490
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 4.615384615384616e-2
allele num: 130
num of homozygotes: 0

South Asian
type: Population
allele count: 298
allele frequency: 4.479855682501503e-2
allele num: 6652
num of homozygotes: 0

East Asian
type: Population
allele count: 20
allele frequency: 9.090909090909091e-2
allele num: 220
num of homozygotes: 0

Other
type: Population
allele count: 14
allele frequency: 7.954545454545454e-2
allele num: 176
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 26
allele frequency: 1.895043731778426e-2
allele num: 1372
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.069e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.69e0

QD
type: SiteQuality
SIO_000300: 8.82e0

MQ
type: SiteQuality
SIO_000300: 6.024e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.1e-1

DP
type: SiteQuality
SIO_000300: 2.84247e5

GenotypeQuality
all individuals: 183
bin: 6.25e1
variant carriers: 18

GenotypeQuality
all individuals: 306
bin: 1.75e1
variant carriers: 44

GenotypeQuality
all individuals: 166
bin: 7.75e1
variant carriers: 19

GenotypeQuality
all individuals: 135
bin: 9.25e1
variant carriers: 7

GenotypeQuality
all individuals: 160
bin: 8.25e1
variant carriers: 9

GenotypeQuality
all individuals: 3725
bin: 9.75e1
variant carriers: 160

GenotypeQuality
all individuals: 185
bin: 6.75e1
variant carriers: 19

Other
type: Population
allele count: 6
allele frequency: 3.409090909090909e-2
allele num: 176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 124
allele frequency: 3.224128965158606e-2
allele num: 3846
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 18
allele frequency: 1.311953352769679e-2
allele num: 1372
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 1.428571428571429e-2
allele num: 490
num of homozygotes: 0

South Asian
type: Population
allele count: 295
allele frequency: 4.434756464221287e-2
allele num: 6652
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 2.727272727272727e-2
allele num: 220
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.538461538461539e-2
allele num: 130
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.069e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.3e-2

QD
type: SiteQuality
SIO_000300: 8.82e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.69e0

MQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.1e-1

MQ
type: SiteQuality
SIO_000300: 6.024e1

DP
type: SiteQuality
SIO_000300: 2.84247e5

GenotypeQuality
all individuals: 160
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 194
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 149
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 205
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 135
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.600104004160167e-4
allele num: 3846
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 3.006614552014432e-4
allele num: 6652
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.040816326530612e-3
allele num: 490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1372
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 5.681818181818182e-3
allele num: 176
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.069e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.69e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.024e1

QD
type: SiteQuality
SIO_000300: 8.82e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.3e-2

DP
type: SiteQuality
SIO_000300: 2.84247e5

GenotypeQuality
all individuals: 285
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2983
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 530
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4974
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 340
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.321353065539112e-4
allele num: 7568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.068e0

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

DP
type: SiteQuality
SIO_000300: 3.70687e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.196e0

MQ
type: SiteQuality
SIO_000300: 6.014e1

VQSLOD
type: SiteQuality
SIO_000300: 3.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.52e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.293e1

GenotypeQuality
all individuals: 8343
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2945
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 828
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1546
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3267
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 564
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3760
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4439
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5966
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13100
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10028
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5990
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.023062917256727e-5
allele num: 49430
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7104
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6106
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.016e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

MQRankSum
type: SiteQuality
SIO_000300: -2.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.149999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.063489e6

QD
type: SiteQuality
SIO_000300: 1.342e1

GenotypeQuality
all individuals: 588
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6036
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1013
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22293
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3274
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1258
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11159
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6044
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50984
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 4.061738424045491e-4
allele num: 7386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6318
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.96e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.88e-1

FS
type: SiteQuality
SIO_000300: 8.75e-1

DP
type: SiteQuality
SIO_000300: 1.192328e6

QD
type: SiteQuality
SIO_000300: 9.76e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 199
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2474
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10279
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30441
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3280
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 308
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6126
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53114
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10534
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.523925632429137e-4
allele num: 6562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7612
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.475e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.52e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.053e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

DP
type: SiteQuality
SIO_000300: 1.281665e6

VQSLOD
type: SiteQuality
SIO_000300: 1.7e0

GenotypeQuality
all individuals: 665
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 420
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variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6126
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.64822833904432e-5
allele num: 53114
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13790
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.475e1

MQRankSum
type: SiteQuality
SIO_000300: 5.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.37e-1

FS
type: SiteQuality
SIO_000300: 7.053e0

DP
type: SiteQuality
SIO_000300: 1.281665e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.7e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.35e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 112

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1404
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.542588354945334e-4
allele num: 7866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 92
allele frequency: 1.676934854726404e-3
allele num: 54862
num of homozygotes: 0

Latino
type: Population
allele count: 19
allele frequency: 1.772057451967916e-3
allele num: 10722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.610305958132045e-4
allele num: 6210
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6844
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14070
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.83e-1

QD
type: SiteQuality
SIO_000300: 1.565e1

VQSLOD
type: SiteQuality
SIO_000300: 3.71e0

MQRankSum
type: SiteQuality
SIO_000300: 2.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.329021e6

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 7

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 34314
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variant carriers: 0

GenotypeQuality
all individuals: 429
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.275928693813569e-4
allele num: 54862
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6844
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.107320540156361e-5
allele num: 14070
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10722
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7866
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6210
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e-1

DP
type: SiteQuality
SIO_000300: 1.329021e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.12e0

VQSLOD
type: SiteQuality
SIO_000300: 3.71e0

FS
type: SiteQuality
SIO_000300: 9.83e-1

QD
type: SiteQuality
SIO_000300: 1.565e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 443
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1915
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variant carriers: 0

GenotypeQuality
all individuals: 427
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GenotypeQuality
all individuals: 732
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 723
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GenotypeQuality
all individuals: 206
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7996
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6250
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10770
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.045230379033395e-5
allele num: 14194
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7000
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55548
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.38e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.34e-1

DP
type: SiteQuality
SIO_000300: 1.350941e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.454e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

GenotypeQuality
all individuals: 781
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 271
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variant carriers: 0

GenotypeQuality
all individuals: 291
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GenotypeQuality
all individuals: 3281
bin: 9.75e1
variant carriers: 5

GenotypeQuality
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GenotypeQuality
all individuals: 41050
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variant carriers: 0

GenotypeQuality
all individuals: 2983
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variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11036
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.478312476684641e-5
allele num: 58974
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.128e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.86e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

FS
type: SiteQuality
SIO_000300: 1.26e0

DP
type: SiteQuality
SIO_000300: 1.417946e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.4e0

QD
type: SiteQuality
SIO_000300: 1.25e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 268
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GenotypeQuality
all individuals: 530
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9144
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.87941751021133e-5
allele num: 11262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8094
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.093e0

MQRankSum
type: SiteQuality
SIO_000300: 7.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.97e0

VQSLOD
type: SiteQuality
SIO_000300: -1.041e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.528e0

MQ
type: SiteQuality
SIO_000300: 5.869e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e0

DP
type: SiteQuality
SIO_000300: 1.48302e6

QD
type: SiteQuality
SIO_000300: 1.45e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 898
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GenotypeQuality
all individuals: 73
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9720
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.678362573099415e-4
allele num: 8550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16224
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65866
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.01e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.79e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.76e-1

FS
type: SiteQuality
SIO_000300: 6.05e-1

DP
type: SiteQuality
SIO_000300: 1.54054e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 924
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66418
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.013993104846887e-4
allele num: 9862
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16354
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 9.93e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

MQRankSum
type: SiteQuality
SIO_000300: -5.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 1.551602e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.01e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.0e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 36
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3654
bin: 6.75e1
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GenotypeQuality
all individuals: 920
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504981488727689e-5
allele num: 66446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16368
num of homozygotes: 0

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.957e1

DP
type: SiteQuality
SIO_000300: 1.552387e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.161e0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3300
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 917
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 931
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9876
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.105751618024179e-5
allele num: 16378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66466
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.720000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.85e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQRankSum
type: SiteQuality
SIO_000300: -1.661e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.7e0

DP
type: SiteQuality
SIO_000300: 1.552806e6

QD
type: SiteQuality
SIO_000300: 1.335e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.416e0

GenotypeQuality
all individuals: 42
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3649
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49934
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16144018583043e-4
allele num: 8610
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.76e-1

DP
type: SiteQuality
SIO_000300: 1.553518e6

QD
type: SiteQuality
SIO_000300: 1.391e1

MQ
type: SiteQuality
SIO_000300: 5.907e1

MQRankSum
type: SiteQuality
SIO_000300: 4.11e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.169e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 9.04e-1

GenotypeQuality
all individuals: 49660
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3642
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 929
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3308
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 68
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504936190705514e-5
allele num: 66448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.01e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

DP
type: SiteQuality
SIO_000300: 1.553486e6

QD
type: SiteQuality
SIO_000300: 1.136e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.204e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.12e-1

MQ
type: SiteQuality
SIO_000300: 5.914e1

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3645
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49626
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3309
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505343971097396e-5
allele num: 66430
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.358e-1

MQ
type: SiteQuality
SIO_000300: 5.948e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.192e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.54e0

MQRankSum
type: SiteQuality
SIO_000300: -3.14e-1

DP
type: SiteQuality
SIO_000300: 1.553318e6

QD
type: SiteQuality
SIO_000300: 1.772e1

FS
type: SiteQuality
SIO_000300: 4.139e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.439e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 471
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 788
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 79
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 9.25e1
variant carriers: 5

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7577
bin: 9.75e1
variant carriers: 4564

GenotypeQuality
all individuals: 744
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 195
bin: 8.75e1
variant carriers: 4

Latino
type: Population
allele count: 180
allele frequency: 1.561957653592503e-2
allele num: 11524
num of homozygotes: 2

East Asian
type: Population
allele count: 423
allele frequency: 4.915175458982105e-2
allele num: 8606
num of homozygotes: 8

European (Non-Finnish)
type: Population
allele count: 2230
allele frequency: 3.35893959933725e-2
allele num: 66390
num of homozygotes: 41

Other
type: Population
allele count: 31
allele frequency: 3.436807095343681e-2
allele num: 902
num of homozygotes: 1

South Asian
type: Population
allele count: 966
allele frequency: 5.888089723271973e-2
allele num: 16406
num of homozygotes: 34

African
type: Population
allele count: 789
allele frequency: 7.960048426150121e-2
allele num: 9912
num of homozygotes: 24

European (Finnish)
type: Population
allele count: 69
allele frequency: 1.045454545454545e-2
allele num: 6600
num of homozygotes: 1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.15e-2

MQ
type: SiteQuality
SIO_000300: 5.965e1

DP
type: SiteQuality
SIO_000300: 1.747046e6

QD
type: SiteQuality
SIO_000300: 1.405e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.41e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.57e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.46e0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 946
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3422
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 49099
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50779530170984e-5
allele num: 66322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.400000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.860000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.367e0

FS
type: SiteQuality
SIO_000300: 2.098e0

QD
type: SiteQuality
SIO_000300: 1.3e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.912e1

DP
type: SiteQuality
SIO_000300: 1.575895e6

GenotypeQuality
all individuals: 342
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3423
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 791
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 48957
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variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 936
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509115054931788e-5
allele num: 66264
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 5.124e0

DP
type: SiteQuality
SIO_000300: 1.574405e6

VQSLOD
type: SiteQuality
SIO_000300: 9.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.412e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.06e-1

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3695
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 953
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48749
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 935
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9864
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.533502584096473e-5
allele num: 66174
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.590000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.572017e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.44e0

MQRankSum
type: SiteQuality
SIO_000300: -1.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.68e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

QD
type: SiteQuality
SIO_000300: 1.362e1

GenotypeQuality
all individuals: 97
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3423
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 564
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3692
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 936
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66124
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.1020258725897e-5
allele num: 16388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.6e0

VQSLOD
type: SiteQuality
SIO_000300: 7.19e-1

FS
type: SiteQuality
SIO_000300: 2.94e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.124e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.620000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.557e1

DP
type: SiteQuality
SIO_000300: 1.57022e6

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47183
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3425
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 893
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.049431281066081e-5
allele num: 65586
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16340
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 902
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.5545e6

QD
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FS
type: SiteQuality
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BaseQRankSum
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MQRankSum
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SIO_000300: -4.7e-2

InbreedingCoeff
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SIO_000300: 5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.97e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
allele num: 15942
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.606890345802802e-5
allele num: 62232
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6494
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African
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allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.232e0

VQSLOD
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DP
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.675e0

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
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SIO_000300: 1.421e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 9360
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 7958
num of homozygotes: 0

European (Finnish)
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allele frequency: 1.231906375115491e-3
allele num: 6494
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 15942
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11088
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.213780691605605e-5
allele num: 62232
num of homozygotes: 0

Other
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allele frequency: 1.141552511415525e-3
allele num: 876
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.410339e6

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.232e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.82e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 9256
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61364
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6472
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Other
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allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 10992
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South Asian
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allele frequency: 6.309944472488642e-5
allele num: 15848
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East Asian
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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MQRankSum
type: SiteQuality
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FS
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ReadPosRankSum
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.284e0

DP
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SIO_000300: 1.357625e6

QD
type: SiteQuality
SIO_000300: 8.94e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7638
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.650764303872693e-5
allele num: 60578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6444
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South Asian
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10890
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9116
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.941e1

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -7.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.557e0

VQSLOD
type: SiteQuality
SIO_000300: -1.222e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

DP
type: SiteQuality
SIO_000300: 1.306564e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8984
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6404
num of homozygotes: 0

East Asian
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allele frequency: 2.667377967457989e-4
allele num: 7498
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 59776
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15666
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10814
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.279614e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
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MQ
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ReadPosRankSum
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ClippingRankSum
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SIO_000300: -7.55e-1

QD
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

MQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.332977872567315e-4
allele num: 7502
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8944
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 59476
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15648
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6418
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 850
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
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FS
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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MQ
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InbreedingCoeff
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DP
type: SiteQuality
SIO_000300: 1.262974e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6372
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.705786026200873e-5
allele num: 58624
num of homozygotes: 0

East Asian
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South Asian
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allele frequency: 0.0e0
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African
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MQ
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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QD
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BaseQRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Latino
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Other
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.737861040631191e-5
allele num: 57542
num of homozygotes: 0

FS
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VQSLOD
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DP
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MQRankSum
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QD
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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allele num: 15378
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African
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allele frequency: 1.151808339092375e-4
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European (Finnish)
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East Asian
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Other
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allele num: 836
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European (Non-Finnish)
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allele frequency: 3.475722081262382e-4
allele num: 57542
num of homozygotes: 0

ReadPosRankSum
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MQ
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InbreedingCoeff
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BaseQRankSum
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DP
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FS
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MQRankSum
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VQSLOD
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6344
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8682
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 9.552923194497516e-5
allele num: 10468
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 57542
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.48e-1

BaseQRankSum
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SIO_000300: 2.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.69e-1

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.24548e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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QD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6344
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.737257218303742e-5
allele num: 57562
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15390
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10482
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Other
type: Population
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allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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MQ
type: SiteQuality
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VQSLOD
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DP
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SIO_000300: 1.243351e6

BaseQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.38e0

QD
type: SiteQuality
SIO_000300: 3.48e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10446
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 57262
num of homozygotes: 0

African
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allele count: 4
allele frequency: 4.634994206257242e-4
allele num: 8630
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6324
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

FS
type: SiteQuality
SIO_000300: 3.013e0

ReadPosRankSum
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InbreedingCoeff
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QD
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VQSLOD
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SIO_000300: 1.31e0

MQRankSum
type: SiteQuality
SIO_000300: -4.66e-1

DP
type: SiteQuality
SIO_000300: 1.242607e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.34e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6292
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.177301624676242e-4
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 56172
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -4.9e-3

DP
type: SiteQuality
SIO_000300: 1.242525e6

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
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BaseQRankSum
type: SiteQuality
SIO_000300: 4.75e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

QD
type: SiteQuality
SIO_000300: 7.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6300
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.541201883919402e-5
allele num: 56478
num of homozygotes: 0

South Asian
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allele count: 0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.308e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.79e-1

DP
type: SiteQuality
SIO_000300: 1.242049e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.78e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.567692983006208e-5
allele num: 63788
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8186
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9624
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.76e-1

VQSLOD
type: SiteQuality
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MQRankSum
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.564e1

DP
type: SiteQuality
SIO_000300: 1.559709e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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East Asian
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South Asian
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allele frequency: 6.430868167202572e-5
allele num: 15550
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Other
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num of homozygotes: 0

FS
type: SiteQuality
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QD
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -8.3e-1

MQ
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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num of homozygotes: 0

South Asian
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allele frequency: 1.286173633440514e-4
allele num: 15550
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8212
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63924
num of homozygotes: 0

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
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MQRankSum
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FS
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DP
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BaseQRankSum
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ClippingRankSum
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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num of homozygotes: 0

European (Finnish)
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allele count: 0
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Latino
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allele num: 11288
num of homozygotes: 0

East Asian
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South Asian
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African
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Other
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
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QD
type: SiteQuality
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BaseQRankSum
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FS
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 64126
num of homozygotes: 0

South Asian
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
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allele frequency: 8.854258898530193e-5
allele num: 11294
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Other
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African
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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DP
type: SiteQuality
SIO_000300: 1.64024e6

QD
type: SiteQuality
SIO_000300: 1.375e1

VQSLOD
type: SiteQuality
SIO_000300: 4.85e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.157e0

MQ
type: SiteQuality
SIO_000300: 6.065e1

GenotypeQuality
all individuals: 929
bin: 7.5e0
variant carriers: 8

GenotypeQuality
all individuals: 2978
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1649
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2098
bin: 2.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1336
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1443
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 16550
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2833
bin: 2.25e1
variant carriers: 3

GenotypeQuality
all individuals: 2368
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5218
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.234567901234568e-3
allele num: 810
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6366
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 3.04228780042592e-4
allele num: 13148
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7714
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 2.195278462629606e-4
allele num: 59218
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.965e0

DP
type: SiteQuality
SIO_000300: 1.737222e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

QD
type: SiteQuality
SIO_000300: 5.600000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.204e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e-1

Latino
type: Population
allele count: 2
allele frequency: 1.924187030979411e-4
allele num: 10394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6366
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

DP
type: SiteQuality
SIO_000300: 1.737222e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.43e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.204e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.965e0

QD
type: SiteQuality
SIO_000300: 5.600000000000001e-1

GenotypeQuality
all individuals: 2484
bin: 3.75e1
variant carriers: 15

GenotypeQuality
all individuals: 2266
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5218
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2833
bin: 2.25e1
variant carriers: 20

GenotypeQuality
all individuals: 1282
bin: 5.75e1
variant carriers: 6

GenotypeQuality
all individuals: 901
bin: 1.25e1
variant carriers: 33

GenotypeQuality
all individuals: 1649
bin: 4.25e1
variant carriers: 17

GenotypeQuality
all individuals: 1645
bin: 4.75e1
variant carriers: 9

GenotypeQuality
all individuals: 16550
bin: 6.25e1
variant carriers: 8

GenotypeQuality
all individuals: 2368
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.570845114671693e-4
allele num: 6366
num of homozygotes: 0

South Asian
type: Population
allele count: 34
allele frequency: 2.585944630362032e-3
allele num: 13148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 77
allele frequency: 1.30028032017292e-3
allele num: 59218
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 1.037075447238787e-3
allele num: 7714
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 6.436387041407423e-4
allele num: 9322
num of homozygotes: 0

Latino
type: Population
allele count: 15
allele frequency: 1.443140273234558e-3
allele num: 10394
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.204e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.965e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e-1

QD
type: SiteQuality
SIO_000300: 5.600000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

DP
type: SiteQuality
SIO_000300: 1.737222e6

GenotypeQuality
all individuals: 4846
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4105
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1875
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8954
bin: 9.75e1
variant carriers: 23

GenotypeQuality
all individuals: 95
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.118900593292166e-4
allele num: 66072
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.742160278745645e-4
allele num: 11480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.691853310361801e-4
allele num: 16252
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9936
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.169864295741694e-4
allele num: 8548
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.28e0

FS
type: SiteQuality
SIO_000300: 9.15e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.32e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.48e-1

DP
type: SiteQuality
SIO_000300: 1.810575e6

VQSLOD
type: SiteQuality
SIO_000300: 3.59e0

QD
type: SiteQuality
SIO_000300: 1.44e1

GenotypeQuality
all individuals: 59
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7989
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2352
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3607
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25437
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16304
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9974
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510209012927389e-5
allele num: 66216
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.403e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.815776e6

MQRankSum
type: SiteQuality
SIO_000300: 6.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e0

VQSLOD
type: SiteQuality
SIO_000300: -1.86e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.941e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.254e0

GenotypeQuality
all individuals: 73
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8958
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1881
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2351
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7966
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.0e-4
allele num: 10000
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509570678099149e-5
allele num: 66244
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.165501165501166e-4
allele num: 8580
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.53e-1

QD
type: SiteQuality
SIO_000300: 1.105e1

MQRankSum
type: SiteQuality
SIO_000300: -1.8e-1

FS
type: SiteQuality
SIO_000300: 2.613e0

DP
type: SiteQuality
SIO_000300: 1.818711e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.56e0

GenotypeQuality
all individuals: 503
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8963
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4143
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2362
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4893
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1897
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50665943470138e-5
allele num: 66372
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10020
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.935e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.822738e6

FS
type: SiteQuality
SIO_000300: 4.07e0

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.24e-1

QD
type: SiteQuality
SIO_000300: 1.165e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.47e0