1-38189073-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38189073
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38189073
    reference: chr 1
allele count: 2
allele frequency: 1.683020011107932e-5
allele num: 118834
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.572-29T>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1773-29T>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.258-29T>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.273-29T>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.258-29T>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.194-29T>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.447-29T>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1773-29T>C
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13154
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19719
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4072
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3488
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5578
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4847
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8890
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2840
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1520
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

1-38189074-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38189074
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38189074
    reference: chr 1
allele count: 1
allele frequency: 8.420201748033883e-6
allele num: 118762
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1773-30C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.273-30C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.258-30C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.258-30C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1773-30C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.194-30C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.572-30C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.447-30C>T
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19393
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13040
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6928
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3913
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3118
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1634
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1520
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

1-38189081-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38189081
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38189081
    reference: chr 1
allele count: 44
allele frequency: 3.7243947858473e-4
allele num: 118140
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.273-37G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.572-37G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1773-37G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1773-37G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.194-37G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.258-37G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.258-37G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.447-37G>A
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2698
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5221
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8033
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11210
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4717
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16606
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 7080
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7441
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19927
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 1
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

1-38189085-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38189085
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38189085
    reference: chr 1
allele count: 1
allele frequency: 8.495454931611589e-6
allele num: 117710
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.258-41G>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.273-41G>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.194-41G>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.258-41G>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.572-41G>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.447-41G>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1773-41G>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1773-41G>C
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9247
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5043
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4702
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10241
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14704
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2668
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2761
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17113
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3324
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3675
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6742
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1499
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

1-38189086-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38189086
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38189086
    reference: chr 1
allele count: 43
allele frequency: 3.659387605739281e-4
allele num: 117506
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.447-42G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.258-42G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1773-42G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.258-42G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.572-42G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1773-42G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.194-42G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.273-42G>A
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10122
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2669
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4729
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5012
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8974
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14675
  bin: 2.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 9214
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3473
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2545
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3663
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2408
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1981
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

1-38189087-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38189087
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38189087
    reference: chr 1
allele count: 5
allele frequency: 4.254377754709596e-5
allele num: 117526
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1773-43C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.572-43C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.447-43C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.273-43C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.258-43C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1773-43C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.258-43C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.194-43C>T
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9211
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4782
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2654
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14700
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4978
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9166
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9887
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3378
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3865
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4840
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3656
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2040
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD

1-38189087-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38189087
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38189087
    reference: chr 1
allele count: 1
allele frequency: 8.508755509419192e-6
allele num: 117526
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.258-43C>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.447-43C>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.194-43C>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.273-43C>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1773-43C>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1773-43C>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.572-43C>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.258-43C>A
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4782
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4978
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2654
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9211
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9166
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9887
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14700
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3865
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1981
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2040
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3378
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/1-38189091-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38189091
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38189091
    reference: chr 1
allele count: 1
allele frequency: 8.527911855503062e-6
allele num: 117262
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.258-47G>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1773-47G>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.194-47G>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.572-47G>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.273-47G>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1773-47G>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.258-47G>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.447-47G>T
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11755
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12871
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4800
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9070
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2637
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4935
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2526
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1485
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3393
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4829
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2548
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

1-38189094-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38189094
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38189094
    reference: chr 1
allele count: 1
allele frequency: 8.543649505322693e-6
allele num: 117046
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.194-50G>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.447-50G>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.258-50G>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.258-50G>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1773-50G>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.572-50G>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.273-50G>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1773-50G>C
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8974
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12516
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9033
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12367
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4908
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4806
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4741
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4509
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12655
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3356
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2580
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

1-38189095-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38189095
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38189095
    reference: chr 1
allele count: 2
allele frequency: 1.710483553700631e-5
allele num: 116926
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.258-51G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.447-51G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.572-51G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1773-51G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1773-51G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.273-51G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.258-51G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.194-51G>A
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12498
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4905
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4805
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12465
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8901
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9027
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2513
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3646
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11454
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6084
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5074
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

1-38192724-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192724
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192724
    reference: chr 1
allele count: 19
allele frequency: 1.695762379065367e-4
allele num: 112044
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.446+50G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.193+50G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.571+50G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1772+50G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.272+50G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.257+50G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1772+50G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.257+50G>A
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7729
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 19958
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16276
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4593
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2908
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1108
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28652
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/1-38192726-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192726
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192726
    reference: chr 1
allele count: 3
allele frequency: 2.680438162291596e-5
allele num: 111922
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.257+48G>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1772+48G>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1772+48G>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.571+48G>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.193+48G>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.272+48G>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.446+48G>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.257+48G>T
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16946
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6906
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20150
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3336
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4547
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2848
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1314
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

1-38192726-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192726
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192726
    reference: chr 1
allele count: 66
allele frequency: 5.896963957041511e-4
allele num: 111922
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.272+48G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.571+48G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.193+48G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1772+48G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.257+48G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1772+48G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.257+48G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.446+48G>A
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4547
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20150
  bin: 2.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16946
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3336
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6906
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5126
  bin: 3.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 5910
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1453
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2276
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1314
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum

1-38192727-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192727
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192727
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 112102
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.446+47C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.257+47C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.571+47C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.193+47C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1772+47C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.272+47C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.257+47C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1772+47C>T
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 20330
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17731
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4508
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3335
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6011
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1959
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3148
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5954
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

1-38192729-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192729
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192729
    reference: chr 1
allele count: 1
allele frequency: 8.899805984229543e-6
allele num: 112362
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.257+45C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.272+45C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1772+45C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.446+45C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.257+45C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.193+45C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1772+45C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.571+45C>T
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4460
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5296
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5089
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1916
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2167
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-38192759-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192759
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192759
    reference: chr 1
allele count: 12
allele frequency: 1.050788091068301e-4
allele num: 114200
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.446+15C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.257+15C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.193+15C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.257+15C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.571+15C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1772+15C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.272+15C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1772+15C>T
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22892
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5374
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2976
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42332
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3246
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
reference allele: G
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

1-38192759-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192759
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192759
    reference: chr 1
allele count: 3
allele frequency: 2.626970227670753e-5
allele num: 114200
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.272+15C>G
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.571+15C>G
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.257+15C>G
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1772+15C>G
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.446+15C>G
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1772+15C>G
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.193+15C>G
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.257+15C>G
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22892
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5374
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2976
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1416
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1053
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

1-38192773-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192773
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192773
    reference: chr 1
allele count: 1
allele frequency: 8.615639108109039e-6
allele num: 116068
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.193+1G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.257+1G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1772+1G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1772+1G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.571+1G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.446+1G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.272+1G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.257+1G>A
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24714
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5434
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2394
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6301
  bin: 6.75e1
  variant carriers: 0
hgvs: c.1772+1G>A
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

1-38192776-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192776
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192776
    reference: chr 1
allele count: 1
allele frequency: 8.580892069539549e-6
allele num: 116538
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.255G>A
  hgvsp: ENST00000330210.7:c.255G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.255G>A
  hgvsp: ENST00000540011.1:c.255G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.569G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1770G>A
  hgvsp: ENST00000373048.4:c.1770G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.270G>A
  hgvsp: ENST00000534097.1:c.270G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1770G>A
  hgvsp: ENST00000427468.2:c.1770G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.444G>A
  hgvsp: ENST00000437645.1:c.444G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.191G>A
  hgvsp: ENST00000432874.3:c.191G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23750
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24981
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1455
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 8.75e1
  variant carriers: 0
hgvs: c.1770G>A
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

1-38192784-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192784
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192784
    reference: chr 1
allele count: 1
allele frequency: 8.508321138073035e-6
allele num: 117532
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.436A>G
  hgvsp: ENSP00000432693.1:p.Ile146Val
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1762A>G
  hgvsp: ENSP00000397746.2:p.Ile588Val
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.247A>G
  hgvsp: ENSP00000330379.7:p.Ile83Val
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.183A>G
  hgvsp: ENSP00000436425.1:p.Ile62Val
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.561A>G
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.262A>G
  hgvsp: ENSP00000431389.1:p.Ile88Val
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.247A>G
  hgvsp: ENSP00000441822.1:p.Ile83Val
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1762A>G
  hgvsp: ENSP00000362139.4:p.Ile588Val
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5475
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25688
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24002
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1098
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ile588Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/1-38192793-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192793
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192793
    reference: chr 1
allele count: 1
allele frequency: 8.457231778894133e-6
allele num: 118242
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1753G>T
  hgvsp: ENSP00000397746.2:p.Val585Leu
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1753G>T
  hgvsp: ENSP00000362139.4:p.Val585Leu
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.427G>T
  hgvsp: ENSP00000432693.1:p.Val143Leu
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.253G>T
  hgvsp: ENSP00000431389.1:p.Val85Leu
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.238G>T
  hgvsp: ENSP00000330379.7:p.Val80Leu
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.552G>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.174G>T
  hgvsp: ENSP00000436425.1:p.Val59Leu
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.238G>T
  hgvsp: ENSP00000441822.1:p.Val80Leu
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5536
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val585Leu
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

1-38192796-TCATCACGGA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192796
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192787
    reference: chr 1
allele count: 2
allele frequency: 1.688903901368012e-5
allele num: 118420
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.415_423delTCCGTGATG
  hgvsp: ENSP00000432693.1:p.Met141_Val143del
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.226_234delTCCGTGATG
  hgvsp: ENSP00000441822.1:p.Met78_Val80del
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsp: ENSP00000362139.4:p.Met583_Val585del
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.241_249delTCCGTGATG
  hgvsp: ENSP00000431389.1:p.Met83_Val85del
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.540_548delTCCGTGATG
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.226_234delTCCGTGATG
  hgvsp: ENSP00000330379.7:p.Met78_Val80del
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsp: ENSP00000397746.2:p.Met583_Val585del
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.162_170delTCCGTGATG
  hgvsp: ENSP00000436425.1:p.Met57_Val59del
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25956
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5538
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24392
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1498
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Met583_Val585del
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: TCATCACGGA
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

1-38192802-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192802
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192802
    reference: chr 1
allele count: 5
allele frequency: 4.214430209035738e-5
allele num: 118640
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.244G>A
  hgvsp: ENSP00000431389.1:p.Val82Met
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.229G>A
  hgvsp: ENSP00000330379.7:p.Val77Met
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1744G>A
  hgvsp: ENSP00000397746.2:p.Val582Met
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.229G>A
  hgvsp: ENSP00000441822.1:p.Val77Met
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.418G>A
  hgvsp: ENSP00000432693.1:p.Val140Met
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.165G>A
  hgvsp: ENSP00000436425.1:p.Val56Met
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1744G>A
  hgvsp: ENSP00000362139.4:p.Val582Met
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.543G>A
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24518
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26006
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5549
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6440
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val582Met
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

1-38192802-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192802
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192801
    reference: chr 1
allele count: 1
allele frequency: 8.428860418071477e-6
allele num: 118640
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.243delC
  hgvsp: ENSP00000431389.1:p.Val82Ter
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1743delC
  hgvsp: ENSP00000397746.2:p.Val582Ter
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.228delC
  hgvsp: ENSP00000330379.7:p.Val77Ter
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1743delC
  hgvsp: ENSP00000362139.4:p.Val582Ter
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.542delC
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.164delC
  hgvsp: ENSP00000436425.1:p.Val56Ter
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.228delC
  hgvsp: ENSP00000441822.1:p.Val77Ter
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.417delC
  hgvsp: ENSP00000432693.1:p.Val140Ter
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24518
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46320
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val582Ter
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: CG
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD

1-38192803-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192803
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192803
    reference: chr 1
allele count: 240
allele frequency: 2.021529286905544e-3
allele num: 118722
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1743C>T
  hgvsp: ENST00000427468.2:c.1743C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.542C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.228C>T
  hgvsp: ENST00000330210.7:c.228C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.164C>T
  hgvsp: ENST00000432874.3:c.164C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.243C>T
  hgvsp: ENST00000534097.1:c.243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1743C>T
  hgvsp: ENST00000373048.4:c.1743C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.228C>T
  hgvsp: ENST00000540011.1:c.228C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.417C>T
  hgvsp: ENST00000437645.1:c.417C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 4.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 3.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 24490
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 5514
  bin: 3.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 25959
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 4.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1112
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser581Ser
num of homozygotes: 1
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

1-38192807-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192807
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192807
    reference: chr 1
allele count: 1
allele frequency: 8.412409987213136e-6
allele num: 118872
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.239G>A
  hgvsp: ENSP00000431389.1:p.Gly80Asp
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.224G>A
  hgvsp: ENSP00000330379.7:p.Gly75Asp
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.413G>A
  hgvsp: ENSP00000432693.1:p.Gly138Asp
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.538G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1739G>A
  hgvsp: ENSP00000362139.4:p.Gly580Asp
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1739G>A
  hgvsp: ENSP00000397746.2:p.Gly580Asp
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.224G>A
  hgvsp: ENSP00000441822.1:p.Gly75Asp
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.160G>A
  hgvsp: ENSP00000436425.1:p.Gly54Asp
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26073
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5547
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6461
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly580Asp
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/1-38192808-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192808
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192808
    reference: chr 1
allele count: 1
allele frequency: 8.410570404884859e-6
allele num: 118898
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.223G>T
  hgvsp: ENSP00000330379.7:p.Gly75Cys
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1738G>T
  hgvsp: ENSP00000362139.4:p.Gly580Cys
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.223G>T
  hgvsp: ENSP00000441822.1:p.Gly75Cys
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1738G>T
  hgvsp: ENSP00000397746.2:p.Gly580Cys
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.159G>T
  hgvsp: ENSP00000436425.1:p.Gly54Cys
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.238G>T
  hgvsp: ENSP00000431389.1:p.Gly80Cys
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.537G>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.412G>T
  hgvsp: ENSP00000432693.1:p.Gly138Cys
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5542
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1495
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6464
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly580Cys
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

1-38192809-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192809
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192809
    reference: chr 1
allele count: 1
allele frequency: 8.409721638213775e-6
allele num: 118910
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.222G>A
  hgvsp: ENST00000330210.7:c.222G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.237G>A
  hgvsp: ENST00000534097.1:c.237G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1737G>A
  hgvsp: ENST00000373048.4:c.1737G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.411G>A
  hgvsp: ENST00000437645.1:c.411G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1737G>A
  hgvsp: ENST00000427468.2:c.1737G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.222G>A
  hgvsp: ENST00000540011.1:c.222G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.158G>A
  hgvsp: ENST00000432874.3:c.158G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.536G>A
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24706
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26060
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6470
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1116
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu579Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-38192814-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192814
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192814
    reference: chr 1
allele count: 42
allele frequency: 3.534044629935041e-4
allele num: 118844
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1732G>A
  hgvsp: ENSP00000362139.4:p.Val578Ile
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.153G>A
  hgvsp: ENSP00000436425.1:p.Val52Ile
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.406G>A
  hgvsp: ENSP00000432693.1:p.Val136Ile
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1732G>A
  hgvsp: ENSP00000397746.2:p.Val578Ile
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.217G>A
  hgvsp: ENSP00000441822.1:p.Val73Ile
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.232G>A
  hgvsp: ENSP00000431389.1:p.Val78Ile
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.531G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.217G>A
  hgvsp: ENSP00000330379.7:p.Val73Ile
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 25878
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24752
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5554
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1156
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val578Ile
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

1-38192815-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192815
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192815
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 118888
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.530C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.216C>T
  hgvsp: ENST00000540011.1:c.216C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.231C>T
  hgvsp: ENST00000534097.1:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1731C>T
  hgvsp: ENST00000373048.4:c.1731C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1731C>T
  hgvsp: ENST00000427468.2:c.1731C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.405C>T
  hgvsp: ENST00000437645.1:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.152C>T
  hgvsp: ENST00000432874.3:c.152C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.216C>T
  hgvsp: ENST00000330210.7:c.216C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24766
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5559
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1484
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46426
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu577Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

1-38192821-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192821
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192821
    reference: chr 1
allele count: 16
allele frequency: 1.346189442509297e-4
allele num: 118854
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.225C>T
  hgvsp: ENST00000534097.1:c.225C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.524C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.399C>T
  hgvsp: ENST00000437645.1:c.399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.210C>T
  hgvsp: ENST00000330210.7:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.146C>T
  hgvsp: ENST00000432874.3:c.146C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1725C>T
  hgvsp: ENST00000373048.4:c.1725C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.210C>T
  hgvsp: ENST00000540011.1:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1725C>T
  hgvsp: ENST00000427468.2:c.1725C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25852
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 24814
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1191
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1483
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala575Ala
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

1-38192824-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192824
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192824
    reference: chr 1
allele count: 399
allele frequency: 3.357681432610744e-3
allele num: 118832
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.222G>A
  hgvsp: ENST00000534097.1:c.222G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1722G>A
  hgvsp: ENST00000427468.2:c.1722G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.207G>A
  hgvsp: ENST00000330210.7:c.207G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1722G>A
  hgvsp: ENST00000373048.4:c.1722G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.521G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.396G>A
  hgvsp: ENST00000437645.1:c.396G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.143G>A
  hgvsp: ENST00000432874.3:c.143G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.207G>A
  hgvsp: ENST00000540011.1:c.207G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 25666
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 3.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24773
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 5522
  bin: 3.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1051
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser574Ser
num of homozygotes: 11
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

1-38192825-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192825
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192825
    reference: chr 1
allele count: 472
allele frequency: 3.97239521965999e-3
allele num: 118820
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1721C>T
  hgvsp: ENSP00000362139.4:p.Ser574Leu
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.520C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.395C>T
  hgvsp: ENSP00000432693.1:p.Ser132Leu
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.142C>T
  hgvsp: ENSP00000436425.1:p.Ser48Leu
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1721C>T
  hgvsp: ENSP00000397746.2:p.Ser574Leu
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.221C>T
  hgvsp: ENSP00000431389.1:p.Ser74Leu
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.206C>T
  hgvsp: ENSP00000330379.7:p.Ser69Leu
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.206C>T
  hgvsp: ENSP00000441822.1:p.Ser69Leu
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 3.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 25579
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 24878
  bin: 2.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 4.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 5500
  bin: 3.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1238
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.25e1
  variant carriers: 2
hgvs: p.Ser574Leu
num of homozygotes: 9
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP

1-38192838-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192838
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192838
    reference: chr 1
allele count: 30
allele frequency: 2.539145154464664e-4
allele num: 118150
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.208G>A
  hgvsp: ENSP00000431389.1:p.Val70Ile
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.382G>A
  hgvsp: ENSP00000432693.1:p.Val128Ile
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.193G>A
  hgvsp: ENSP00000441822.1:p.Val65Ile
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.193G>A
  hgvsp: ENSP00000330379.7:p.Val65Ile
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1708G>A
  hgvsp: ENSP00000397746.2:p.Val570Ile
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.507G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1708G>A
  hgvsp: ENSP00000362139.4:p.Val570Ile
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.129G>A
  hgvsp: ENSP00000436425.1:p.Val44Ile
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25010
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24806
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5544
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46011
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val570Ile
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

1-38192839-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192839
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192839
    reference: chr 1
allele count: 5
allele frequency: 4.234775980350639e-5
allele num: 118070
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.192C>T
  hgvsp: ENST00000540011.1:c.192C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.128C>T
  hgvsp: ENST00000432874.3:c.128C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.192C>T
  hgvsp: ENST00000330210.7:c.192C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.207C>T
  hgvsp: ENST00000534097.1:c.207C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1707C>T
  hgvsp: ENST00000427468.2:c.1707C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1707C>T
  hgvsp: ENST00000373048.4:c.1707C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.506C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.381C>T
  hgvsp: ENST00000437645.1:c.381C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24744
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25021
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5527
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr569Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS

1-38192844-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192844
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192844
    reference: chr 1
allele count: 5
allele frequency: 4.264028654272557e-5
allele num: 117260
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.123G>A
  hgvsp: ENSP00000436425.1:p.Val42Ile
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.187G>A
  hgvsp: ENSP00000441822.1:p.Val63Ile
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.501G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1702G>A
  hgvsp: ENSP00000397746.2:p.Val568Ile
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.202G>A
  hgvsp: ENSP00000431389.1:p.Val68Ile
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.376G>A
  hgvsp: ENSP00000432693.1:p.Val126Ile
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1702G>A
  hgvsp: ENSP00000362139.4:p.Val568Ile
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.187G>A
  hgvsp: ENSP00000330379.7:p.Val63Ile
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5530
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23902
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6207
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val568Ile
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

1-38192845-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192845
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192845
    reference: chr 1
allele count: 6
allele frequency: 5.125489057080863e-5
allele num: 117062
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1701C>T
  hgvsp: ENST00000427468.2:c.1701C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.186C>T
  hgvsp: ENST00000540011.1:c.186C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.201C>T
  hgvsp: ENST00000534097.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.122C>T
  hgvsp: ENST00000432874.3:c.122C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.375C>T
  hgvsp: ENST00000437645.1:c.375C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.186C>T
  hgvsp: ENST00000330210.7:c.186C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.500C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1701C>T
  hgvsp: ENST00000373048.4:c.1701C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5522
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23661
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24678
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1375
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1701
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val567Val
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

1-38192853-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192853
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192853
    reference: chr 1
allele count: 1
allele frequency: 8.654561819535076e-6
allele num: 115546
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.193G>C
  hgvsp: ENSP00000431389.1:p.Ala65Pro
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.178G>C
  hgvsp: ENSP00000330379.7:p.Ala60Pro
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.178G>C
  hgvsp: ENSP00000441822.1:p.Ala60Pro
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.367G>C
  hgvsp: ENSP00000432693.1:p.Ala123Pro
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.114G>C
  hgvsp: ENSP00000436425.1:p.Ala39Pro
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.492G>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1693G>C
  hgvsp: ENSP00000397746.2:p.Ala565Pro
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1693G>C
  hgvsp: ENSP00000362139.4:p.Ala565Pro
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5467
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22302
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2683
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24062
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1694
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 967
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala565Pro
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

1-38192854-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192854
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192854
    reference: chr 1
allele count: 4
allele frequency: 3.466865433618194e-5
allele num: 115378
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.366C>T
  hgvsp: ENST00000437645.1:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.177C>T
  hgvsp: ENST00000330210.7:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.113C>T
  hgvsp: ENST00000432874.3:c.113C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.491C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1692C>T
  hgvsp: ENST00000427468.2:c.1692C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.192C>T
  hgvsp: ENST00000534097.1:c.192C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.177C>T
  hgvsp: ENST00000540011.1:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1692C>T
  hgvsp: ENST00000373048.4:c.1692C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23993
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5949
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1697
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro564Pro
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

1-38192855-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192855
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192855
    reference: chr 1
allele count: 1
allele frequency: 8.675133597057395e-6
allele num: 115272
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.176C>G
  hgvsp: ENSP00000441822.1:p.Pro59Arg
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.176C>G
  hgvsp: ENSP00000330379.7:p.Pro59Arg
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.365C>G
  hgvsp: ENSP00000432693.1:p.Pro122Arg
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1691C>G
  hgvsp: ENSP00000397746.2:p.Pro564Arg
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.191C>G
  hgvsp: ENSP00000431389.1:p.Pro64Arg
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1691C>G
  hgvsp: ENSP00000362139.4:p.Pro564Arg
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.112C>G
  hgvsp: ENSP00000436425.1:p.Pro38Arg
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.490C>G
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5346
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23904
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22178
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1307
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 958
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42138
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro564Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-38192858-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192858
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192858
    reference: chr 1
allele count: 1
allele frequency: 8.743857440148296e-6
allele num: 114366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.188G>T
  hgvsp: ENSP00000431389.1:p.Ser63Ile
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.173G>T
  hgvsp: ENSP00000330379.7:p.Ser58Ile
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.109G>T
  hgvsp: ENSP00000436425.1:p.Ser37Ile
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.173G>T
  hgvsp: ENSP00000441822.1:p.Ser58Ile
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.487G>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1688G>T
  hgvsp: ENSP00000397746.2:p.Ser563Ile
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.362G>T
  hgvsp: ENSP00000432693.1:p.Ser121Ile
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1688G>T
  hgvsp: ENSP00000362139.4:p.Ser563Ile
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2994
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21669
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23417
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5245
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3453
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1281
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 939
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5290
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser563Ile
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP

1-38192860-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192860
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192860
    reference: chr 1
allele count: 2
allele frequency: 1.756543123133673e-5
allele num: 113860
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.360G>C
  hgvsp: ENSP00000432693.1:p.Gln120His
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1686G>C
  hgvsp: ENSP00000362139.4:p.Gln562His
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.485G>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1686G>C
  hgvsp: ENSP00000397746.2:p.Gln562His
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.171G>C
  hgvsp: ENSP00000441822.1:p.Gln57His
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.186G>C
  hgvsp: ENSP00000431389.1:p.Gln62His
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.171G>C
  hgvsp: ENSP00000330379.7:p.Gln57His
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.107G>C
  hgvsp: ENSP00000436425.1:p.Gln36His
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21209
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23215
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3837
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5800
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln562His
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

1-38192863-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192863
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192863
    reference: chr 1
allele count: 1
allele frequency: 8.816942636971204e-6
allele num: 113418
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1683C>A
  hgvsp: ENSP00000362139.4:p.Asp561Glu
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.183C>A
  hgvsp: ENSP00000431389.1:p.Asp61Glu
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1683C>A
  hgvsp: ENSP00000397746.2:p.Asp561Glu
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.357C>A
  hgvsp: ENSP00000432693.1:p.Asp119Glu
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.104C>A
  hgvsp: ENSP00000436425.1:p.Asp35Glu
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.482C>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.168C>A
  hgvsp: ENSP00000330379.7:p.Asp56Glu
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.168C>A
  hgvsp: ENSP00000441822.1:p.Asp56Glu
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23036
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20868
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5155
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5726
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp561Glu
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

1-38192870-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192870
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192870
    reference: chr 1
allele count: 34
allele frequency: 3.067927524723887e-4
allele num: 110824
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.176C>G
  hgvsp: ENSP00000431389.1:p.Ser59Cys
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.161C>G
  hgvsp: ENSP00000441822.1:p.Ser54Cys
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.97C>G
  hgvsp: ENSP00000436425.1:p.Ser33Cys
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.161C>G
  hgvsp: ENSP00000330379.7:p.Ser54Cys
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1676C>G
  hgvsp: ENSP00000397746.2:p.Ser559Cys
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1676C>G
  hgvsp: ENSP00000362139.4:p.Ser559Cys
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.475C>G
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.350C>G
  hgvsp: ENSP00000432693.1:p.Ser117Cys
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436288
  ensembl transcript: ENST00000525749
  gene symbol: EPHA10
  hgvsc: ENST00000525749.1:c.*269C>G
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4671
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 22035
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4987
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18357
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6195
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1721
  bin: 9.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1309
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser559Cys
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD

1-38192882-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192882
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192882
    reference: chr 1
allele count: 1
allele frequency: 9.607624610891203e-6
allele num: 104084
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.149C>T
  hgvsp: ENSP00000441822.1:p.Ala50Val
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436288
  ensembl transcript: ENST00000525749
  gene symbol: EPHA10
  hgvsc: ENST00000525749.1:c.*257C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.338C>T
  hgvsp: ENSP00000432693.1:p.Ala113Val
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1664C>T
  hgvsp: ENSP00000397746.2:p.Ala555Val
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.164C>T
  hgvsp: ENSP00000431389.1:p.Ala55Val
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.463C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.85C>T
  hgvsp: ENSP00000436425.1:p.Ala29Val
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1664C>T
  hgvsp: ENSP00000362139.4:p.Ala555Val
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.149C>T
  hgvsp: ENSP00000330379.7:p.Ala50Val
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7711
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13887
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3965
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11847
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17672
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2164
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala555Val
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

1-38192884-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192884
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192884
    reference: chr 1
allele count: 2
allele frequency: 1.940579457025868e-5
allele num: 103062
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436288
  ensembl transcript: ENST00000525749
  gene symbol: EPHA10
  hgvsc: ENST00000525749.1:c.*257-2A>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.164-2A>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.338-2A>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1664-2A>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.149-2A>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1664-2A>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.85-2A>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.463-2A>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.149-2A>T
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16967
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12751
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13326
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2592
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3867
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 1.75e1
  variant carriers: 0
hgvs: c.1664-2A>T
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD

1-38192890-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192890
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192890
    reference: chr 1
allele count: 3
allele frequency: 3.045808966861598e-5
allele num: 98496
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.149-8C>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1664-8C>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.338-8C>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.149-8C>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.164-8C>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.463-8C>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436288
  ensembl transcript: ENST00000525749
  gene symbol: EPHA10
  hgvsc: ENST00000525749.1:c.*257-8C>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.85-8C>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1664-8C>A
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10116
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3296
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16999
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9869
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3156
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1099
  bin: 7.5e0
  variant carriers: 0
hgvs: c.1664-8C>A
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff

1-38192898-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192898
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192898
    reference: chr 1
allele count: 21
allele frequency: 2.226793629249465e-4
allele num: 94306
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1664-16G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.149-16G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1664-16G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.338-16G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.85-16G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436288
  ensembl transcript: ENST00000525749
  gene symbol: EPHA10
  hgvsc: ENST00000525749.1:c.*257-16G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.463-16G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.149-16G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.164-16G>A
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21435
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10003
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2694
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6907
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11276
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1727
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1692
  bin: 9.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 4698
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24574
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 9.25e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

1-38192899-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192899
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192899
    reference: chr 1
allele count: 2
allele frequency: 2.135383301302584e-5
allele num: 93660
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.149-17C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.149-17C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.463-17C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1664-17C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.85-17C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1664-17C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.338-17C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436288
  ensembl transcript: ENST00000525749
  gene symbol: EPHA10
  hgvsc: ENST00000525749.1:c.*257-17C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.164-17C>T
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4488
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11525
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22090
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9455
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2751
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1887
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

1-38192902-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192902
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192902
    reference: chr 1
allele count: 2
allele frequency: 2.19751241594515e-5
allele num: 91012
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.164-20C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.338-20C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.149-20C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.463-20C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1664-20C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436288
  ensembl transcript: ENST00000525749
  gene symbol: EPHA10
  hgvsc: ENST00000525749.1:c.*257-20C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.85-20C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1664-20C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.149-20C>T
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7455
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23799
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5321
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5255
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2459
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25819
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

1-38192917-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192917
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192917
    reference: chr 1
allele count: 1
allele frequency: 1.251971855672685e-5
allele num: 79874
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.463-35C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.338-35C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.164-35C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.149-35C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.85-35C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1664-35C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436288
  ensembl transcript: ENST00000525749
  gene symbol: EPHA10
  hgvsc: ENST00000525749.1:c.*257-35C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1664-35C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.149-35C>T
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24099
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3028
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7625
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3076
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3497
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5872
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1855
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

1-38192925-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192925
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192925
    reference: chr 1
allele count: 1
allele frequency: 1.389854065323141e-5
allele num: 71950
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.85-43G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.338-43G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436288
  ensembl transcript: ENST00000525749
  gene symbol: EPHA10
  hgvsc: ENST00000525749.1:c.*257-43G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.149-43G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.463-43G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.164-43G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1664-43G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1664-43G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.149-43G>A
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21485
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8527
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1669
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3603
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3908
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

1-38192929-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38192929
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38192929
    reference: chr 1
allele count: 1
allele frequency: 1.456282402283451e-5
allele num: 68668
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.149-47A>G
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1664-47A>G
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.164-47A>G
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.463-47A>G
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.338-47A>G
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1664-47A>G
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436288
  ensembl transcript: ENST00000525749
  gene symbol: EPHA10
  hgvsc: ENST00000525749.1:c.*257-47A>G
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.149-47A>G
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.85-47A>G
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8223
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20302
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19776
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4791
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1903
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1284
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18125
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5319
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

1-38197032-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38197032
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38197032
    reference: chr 1
allele count: 2
allele frequency: 1.815837736739845e-5
allele num: 110142
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1663+51C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.84+51C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.148+51C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.148+51C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.462+51C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.337+51C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436288
  ensembl transcript: ENST00000525749
  gene symbol: EPHA10
  hgvsc: ENST00000525749.1:c.*256+51C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.163+51C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1663+51C>T
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6036
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4706
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6564
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7301
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7449
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1306
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

1-38197039-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38197039
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38197039
    reference: chr 1
allele count: 1
allele frequency: 9.070294784580499e-6
allele num: 110250
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.148+44C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.337+44C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1663+44C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.462+44C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.163+44C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.84+44C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436288
  ensembl transcript: ENST00000525749
  gene symbol: EPHA10
  hgvsc: ENST00000525749.1:c.*256+44C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.148+44C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1663+44C>T
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7294
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3510
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6038
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4746
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2913
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3544
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS

1-38197049-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38197049
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38197049
    reference: chr 1
allele count: 2
allele frequency: 1.810741317495383e-5
allele num: 110452
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.84+34A>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.163+34A>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.462+34A>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.148+34A>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1663+34A>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436288
  ensembl transcript: ENST00000525749
  gene symbol: EPHA10
  hgvsc: ENST00000525749.1:c.*256+34A>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.337+34A>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.148+34A>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1663+34A>C
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6033
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7299
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7454
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3679
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36997
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1592
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD

1-38197051-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38197051
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38197051
    reference: chr 1
allele count: 9
allele frequency: 8.142880408229738e-5
allele num: 110526
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.84+32A>G
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.148+32A>G
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.462+32A>G
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1663+32A>G
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.337+32A>G
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1663+32A>G
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.163+32A>G
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.148+32A>G
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436288
  ensembl transcript: ENST00000525749
  gene symbol: EPHA10
  hgvsc: ENST00000525749.1:c.*256+32A>G
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7297
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3727
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6036
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5182
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7455
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3715
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6566
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1090
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2198
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

1-38197056-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38197056
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38197056
    reference: chr 1
allele count: 1
allele frequency: 9.034403006649321e-6
allele num: 110688
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.148+27G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.148+27G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1663+27G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.337+27G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.462+27G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.84+27G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.163+27G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436288
  ensembl transcript: ENST00000525749
  gene symbol: EPHA10
  hgvsc: ENST00000525749.1:c.*256+27G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1663+27G>A
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6043
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6569
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7456
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3728
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2207
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1345
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP

1-38197057-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38197057
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38197057
    reference: chr 1
allele count: 15
allele frequency: 1.353473011748146e-4
allele num: 110826
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436288
  ensembl transcript: ENST00000525749
  gene symbol: EPHA10
  hgvsc: ENST00000525749.1:c.*256+26G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.462+26G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1663+26G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.337+26G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.84+26G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.163+26G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.148+26G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1663+26G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.148+26G>A
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7299
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3727
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7456
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6565
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5174
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4792
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6040
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1347
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2142
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3439
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

1-38197065-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38197065
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38197065
    reference: chr 1
allele count: 6
allele frequency: 5.381262444169402e-5
allele num: 111498
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436288
  ensembl transcript: ENST00000525749
  gene symbol: EPHA10
  hgvsc: ENST00000525749.1:c.*256+18G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1663+18G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.163+18G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.337+18G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.148+18G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.462+18G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.148+18G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1663+18G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.84+18G>A
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6563
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7458
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7296
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6049
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3290
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3728
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3833
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4805
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2610
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3651
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4274
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

1-38197066-T-TCA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38197066
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38197068
    reference: chr 1
allele count: 185
allele frequency: 1.658835766292457e-3
allele num: 111524
alternate allele: TCA
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.337+15_337+16dupTG
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1663+15_1663+16dupTG
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436288
  ensembl transcript: ENST00000525749
  gene symbol: EPHA10
  hgvsc: ENST00000525749.1:c.*256+15_*256+16dupTG
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.84+15_84+16dupTG
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.462+15_462+16dupTG
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.148+15_148+16dupTG
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.148+15_148+16dupTG
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1663+15_1663+16dupTG
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.163+15_163+16dupTG
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3304
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3722
  bin: 6.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 5162
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 7440
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4798
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6044
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6545
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 6.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 7285
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3831
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 9.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 8.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 9.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 7.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 7.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 8.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 2428
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD

1-38197073-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38197073
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38197073
    reference: chr 1
allele count: 16
allele frequency: 1.425669173468297e-4
allele num: 112228
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.337+10G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436288
  ensembl transcript: ENST00000525749
  gene symbol: EPHA10
  hgvsc: ENST00000525749.1:c.*256+10G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.148+10G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.148+10G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.462+10G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1663+10G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1663+10G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.163+10G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.84+10G>A
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3660
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3372
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7458
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2130
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6554
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3723
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6044
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5165
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1359
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

1-38197075-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38197075
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38197075
    reference: chr 1
allele count: 3
allele frequency: 2.667994735157056e-5
allele num: 112444
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.337+8G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.84+8G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.148+8G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.462+8G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436288
  ensembl transcript: ENST00000525749
  gene symbol: EPHA10
  hgvsc: ENST00000525749.1:c.*256+8G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1663+8G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1663+8G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.163+8G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.148+8G>A
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6044
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6556
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2611
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3597
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7308
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7464
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3722
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4463
  bin: 6.25e1
  variant carriers: 0
hgvs: c.1663+8G>A
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

1-38197077-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38197077
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38197077
    reference: chr 1
allele count: 27
allele frequency: 2.395953500754282e-4
allele num: 112690
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.148+6T>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.148+6T>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436288
  ensembl transcript: ENST00000525749
  gene symbol: EPHA10
  hgvsc: ENST00000525749.1:c.*256+6T>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.462+6T>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.163+6T>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1663+6T>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.84+6T>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.337+6T>C
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1663+6T>C
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6039
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 7307
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3412
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6555
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5168
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
hgvs: c.1663+6T>C
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

1-38197108-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38197108
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38197108
    reference: chr 1
allele count: 1
allele frequency: 8.52747552614524e-6
allele num: 117268
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1638C>T
  hgvsp: ENST00000427468.2:c.1638C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1638C>T
  hgvsp: ENST00000373048.4:c.1638C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.138C>T
  hgvsp: ENST00000534097.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436288
  ensembl transcript: ENST00000525749
  gene symbol: EPHA10
  hgvsc: ENST00000525749.1:c.*231C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.59C>T
  hgvsp: ENST00000432874.3:c.59C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.437C>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.312C>T
  hgvsp: ENST00000437645.1:c.312C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.123C>T
  hgvsp: ENST00000330210.7:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.123C>T
  hgvsp: ENST00000540011.1:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3722
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7308
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6045
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2611
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2355
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser546Ser
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

http://identifiers.org/exac.variant/1-38197109-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38197109
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38197109
    reference: chr 1
allele count: 1
allele frequency: 8.515856524849269e-6
allele num: 117428
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.58G>T
  hgvsp: ENSP00000436425.1:p.Ser20Ile
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.122G>T
  hgvsp: ENSP00000441822.1:p.Ser41Ile
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1637G>T
  hgvsp: ENSP00000362139.4:p.Ser546Ile
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.137G>T
  hgvsp: ENSP00000431389.1:p.Ser46Ile
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436288
  ensembl transcript: ENST00000525749
  gene symbol: EPHA10
  hgvsc: ENST00000525749.1:c.*230G>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.311G>T
  hgvsp: ENSP00000432693.1:p.Ser104Ile
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1637G>T
  hgvsp: ENSP00000397746.2:p.Ser546Ile
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.122G>T
  hgvsp: ENSP00000330379.7:p.Ser41Ile
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.436G>T
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4876
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6045
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2611
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4008
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser546Ile
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-38197123-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38197123
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38197123
    reference: chr 1
allele count: 7
allele frequency: 5.87928978179436e-5
allele num: 119062
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.422G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.297G>A
  hgvsp: ENST00000437645.1:c.297G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1623G>A
  hgvsp: ENST00000427468.2:c.1623G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.44G>A
  hgvsp: ENST00000432874.3:c.44G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.123G>A
  hgvsp: ENST00000534097.1:c.123G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436288
  ensembl transcript: ENST00000525749
  gene symbol: EPHA10
  hgvsc: ENST00000525749.1:c.*216G>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.108G>A
  hgvsp: ENST00000330210.7:c.108G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1623G>A
  hgvsp: ENST00000373048.4:c.1623G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.108G>A
  hgvsp: ENST00000540011.1:c.108G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5788
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2610
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4899
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6045
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7308
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6558
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2926
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln541Gln
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

1-38197127-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38197127
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38197127
    reference: chr 1
allele count: 3
allele frequency: 2.512184092850324e-5
allele num: 119418
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.40C>A
  hgvsp: ENSP00000436425.1:p.Ala14Asp
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.293C>A
  hgvsp: ENSP00000432693.1:p.Ala98Asp
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.104C>A
  hgvsp: ENSP00000441822.1:p.Ala35Asp
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1619C>A
  hgvsp: ENSP00000362139.4:p.Ala540Asp
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.104C>A
  hgvsp: ENSP00000330379.7:p.Ala35Asp
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.119C>A
  hgvsp: ENSP00000431389.1:p.Ala40Asp
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1619C>A
  hgvsp: ENSP00000397746.2:p.Ala540Asp
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.418C>A
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436288
  ensembl transcript: ENST00000525749
  gene symbol: EPHA10
  hgvsc: ENST00000525749.1:c.*212C>A
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5943
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6051
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6558
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4391
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2611
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7310
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala540Asp
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-38197142-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38197142
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38197142
    reference: chr 1
allele count: 1
allele frequency: 8.31255195344971e-6
allele num: 120300
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.403G>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.25G>T
  hgvsp: ENSP00000436425.1:p.Gly9Val
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.278G>T
  hgvsp: ENSP00000432693.1:p.Gly93Val
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.89G>T
  hgvsp: ENSP00000330379.7:p.Gly30Val
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436288
  ensembl transcript: ENST00000525749
  gene symbol: EPHA10
  hgvsc: ENST00000525749.1:c.*197G>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1604G>T
  hgvsp: ENSP00000397746.2:p.Gly535Val
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.89G>T
  hgvsp: ENSP00000441822.1:p.Gly30Val
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1604G>T
  hgvsp: ENSP00000362139.4:p.Gly535Val
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.104G>T
  hgvsp: ENSP00000431389.1:p.Gly35Val
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4798
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7308
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6558
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6055
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5000
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2542
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2924
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly535Val
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS

http://identifiers.org/exac.variant/1-38197144-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38197144
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 38197144
    reference: chr 1
allele count: 1
allele frequency: 8.30923654734603e-6
allele num: 120348
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000441822
  ensembl transcript: ENST00000540011
  gene symbol: EPHA10
  hgvsc: ENST00000540011.1:c.87G>T
  hgvsp: ENST00000540011.1:c.87G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000397746
  ensembl transcript: ENST00000427468
  gene symbol: EPHA10
  hgvsc: ENST00000427468.2:c.1602G>T
  hgvsp: ENST00000427468.2:c.1602G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000432693
  ensembl transcript: ENST00000437645
  gene symbol: EPHA10
  hgvsc: ENST00000437645.1:c.276G>T
  hgvsp: ENST00000437645.1:c.276G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436425
  ensembl transcript: ENST00000432874
  gene symbol: EPHA10
  hgvsc: ENST00000432874.3:c.23G>T
  hgvsp: ENST00000432874.3:c.23G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000330379
  ensembl transcript: ENST00000330210
  gene symbol: EPHA10
  hgvsc: ENST00000330210.7:c.87G>T
  hgvsp: ENST00000330210.7:c.87G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000362139
  ensembl transcript: ENST00000373048
  gene symbol: EPHA10
  hgvsc: ENST00000373048.4:c.1602G>T
  hgvsp: ENST00000373048.4:c.1602G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000431389
  ensembl transcript: ENST00000534097
  gene symbol: EPHA10
  hgvsc: ENST00000534097.1:c.102G>T
  hgvsp: ENST00000534097.1:c.102G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183317
  ensembl protein: ENSP00000436288
  ensembl transcript: ENST00000525749
  gene symbol: EPHA10
  hgvsc: ENST00000525749.1:c.*195G>T
  variant of: http://identifiers.org/hgnc/19987
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183317
  ensembl transcript: ENST00000446149
  gene symbol: EPHA10
  hgvsc: ENST00000446149.2:n.401G>T
  variant of: http://identifiers.org/hgnc/19987
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6058
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5013
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7307
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6556
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro534Pro
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

1-38197144-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 38197144
allele count: 17
allele frequency: 1.412570213048825e-4
allele num: 120348
alternate allele: T
canonical: true
consequence: synonymous
filter: PASS
hgvs: p.Pro534Pro
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 1476
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1103
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2612
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3767
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2053
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25351
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1297
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3123
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.03030303030303e-5
allele num: 66000
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15628
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.28e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.461e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.8e-1

QD
type: SiteQuality
SIO_000300: 1.31e1

MQRankSum
type: SiteQuality
SIO_000300: 4.73e-1

DP
type: SiteQuality
SIO_000300: 1.776336e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 8.74e-1

GenotypeQuality
all individuals: 37
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2920
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2208
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24829
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3760
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1103
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2612
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1365
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8835
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4844
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515840533575868e-5
allele num: 65970
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9714
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e0

FS
type: SiteQuality
SIO_000300: 2.984e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.468e0

QD
type: SiteQuality
SIO_000300: 1.018e1

VQSLOD
type: SiteQuality
SIO_000300: -4.167e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.618e0

MQRankSum
type: SiteQuality
SIO_000300: 1.68e0

DP
type: SiteQuality
SIO_000300: 1.769753e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 74
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3179
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1872
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3329
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1511
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3301
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2869
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1506
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4868
bin: 9.75e1
variant carriers: 42

GenotypeQuality
all individuals: 3579
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2567
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 43
allele frequency: 4.437564499484004e-3
allele num: 9690
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.716875871687587e-5
allele num: 11472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.305e1

VQSLOD
type: SiteQuality
SIO_000300: 3.7e0

FS
type: SiteQuality
SIO_000300: 8.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.653e0

DP
type: SiteQuality
SIO_000300: 1.702686e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-2

MQ
type: SiteQuality
SIO_000300: 5.967e1

GenotypeQuality
all individuals: 269
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1966
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2058
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2396
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3889
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2549
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1336
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4841
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3501
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65576
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.618133686300464e-5
allele num: 15110
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9666
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.850000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.105e0

FS
type: SiteQuality
SIO_000300: 3.886e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.591e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.113e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

DP
type: SiteQuality
SIO_000300: 1.670804e6

GenotypeQuality
all individuals: 4876
bin: 9.75e1
variant carriers: 43

GenotypeQuality
all individuals: 189
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1498
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3880
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6657
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1196
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3334
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2725
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17582
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2045
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.733624454148471e-5
allele num: 11450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527277170260859e-5
allele num: 65476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
num of homozygotes: 0

East Asian
type: Population
allele count: 41
allele frequency: 4.784130688448075e-3
allele num: 8570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15034
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.668769e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.53e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.3e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.69e0

FS
type: SiteQuality
SIO_000300: 1.06e0

QD
type: SiteQuality
SIO_000300: 1.413e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.580000000000001e-1

GenotypeQuality
all individuals: 2698
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1981
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6638
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2389
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2541
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1498
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18130
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1037
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3444
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1078
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15046
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.634520246747695e-5
allele num: 65492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.2e-2

DP
type: SiteQuality
SIO_000300: 1.665104e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.55e0

QD
type: SiteQuality
SIO_000300: 1.381e1

GenotypeQuality
all individuals: 262
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3444
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18130
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2698
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2389
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4840
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6638
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3656
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2541
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1498
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15046
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526904049349539e-5
allele num: 65492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.665104e6

MQRankSum
type: SiteQuality
SIO_000300: 2.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

QD
type: SiteQuality
SIO_000300: 1.381e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.55e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 14036
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2102
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4037
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3260
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2123
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4427
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1075
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2607
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6289
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3896
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65412
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.165501165501166e-4
allele num: 8580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14916
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9626
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.546e0

QD
type: SiteQuality
SIO_000300: 1.704e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.66e-1

DP
type: SiteQuality
SIO_000300: 1.645728e6

VQSLOD
type: SiteQuality
SIO_000300: -2.027e0

MQRankSum
type: SiteQuality
SIO_000300: -2.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.4e-2

MQ
type: SiteQuality
SIO_000300: 5.887e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530690341343946e-5
allele num: 65330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14824
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
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SIO_000300: -1.401e0

DP
type: SiteQuality
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VQSLOD
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QD
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.782e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.080000000000001e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65252
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.350621285791464e-4
allele num: 14808
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9600
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6436
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 8.18e0

VQSLOD
type: SiteQuality
SIO_000300: 2.13e0

MQRankSum
type: SiteQuality
SIO_000300: 3.18e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 19

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6340
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

East Asian
type: Population
allele count: 19
allele frequency: 2.227432590855803e-3
allele num: 8530
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63950
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.906e0

FS
type: SiteQuality
SIO_000300: 1.421e0

QD
type: SiteQuality
SIO_000300: 1.31e1

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

DP
type: SiteQuality
SIO_000300: 1.41118e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.84e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.345765892563922e-4
allele num: 8526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6338
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.052188552188552e-4
allele num: 9504
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63914
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

DP
type: SiteQuality
SIO_000300: 1.416729e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.6e-2

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.23e-1

QD
type: SiteQuality
SIO_000300: 1.356e1

VQSLOD
type: SiteQuality
SIO_000300: 5.84e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.134e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 68

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

Latino
type: Population
allele count: 15
allele frequency: 1.321120310022899e-3
allele num: 11354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 19
allele frequency: 2.972744625590637e-4
allele num: 63914
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.259445843828715e-3
allele num: 794
num of homozygotes: 0

African
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allele count: 31
allele frequency: 3.261784511784512e-3
allele num: 9504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6338
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
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VQSLOD
type: SiteQuality
SIO_000300: 5.84e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.6e-2

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

BaseQRankSum
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63936
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 9528
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11608
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European (Finnish)
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allele count: 0
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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QD
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InbreedingCoeff
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MQ
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MQRankSum
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ClippingRankSum
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.560208443848098e-5
allele num: 64094
num of homozygotes: 0

Other
type: Population
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6360
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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MQRankSum
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DP
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MQ
type: SiteQuality
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QD
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 12

GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 11
allele frequency: 1.699839287921869e-4
allele num: 64712
num of homozygotes: 0

Other
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num of homozygotes: 0

East Asian
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African
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allele num: 9596
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FS
type: SiteQuality
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QD
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MQRankSum
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MQ
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.380196762932403e-4
allele num: 12604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6418
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.83e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

FS
type: SiteQuality
SIO_000300: 6.850000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.41e-1

DP
type: SiteQuality
SIO_000300: 1.50342e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.07e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.021e0

QD
type: SiteQuality
SIO_000300: 1.388e1

GenotypeQuality
all individuals: 1464
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6456
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9656
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531581204435459e-5
allele num: 65292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.936e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.63e-1

FS
type: SiteQuality
SIO_000300: 6.02e0

QD
type: SiteQuality
SIO_000300: 9.59e0

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.93e-1

DP
type: SiteQuality
SIO_000300: 1.53085e6

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 292
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9668
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.123521869212138e-5
allele num: 14038
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65418
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.209e0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.53658e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.713e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

FS
type: SiteQuality
SIO_000300: 1.342e0

VQSLOD
type: SiteQuality
SIO_000300: 2.27e0

QD
type: SiteQuality
SIO_000300: 1.562e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.75e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6466
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.676036786395974e-5
allele num: 11526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9684
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65706
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14712
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.620000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.69e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

QD
type: SiteQuality
SIO_000300: 1.471e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

FS
type: SiteQuality
SIO_000300: 3.505e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.73e-1

DP
type: SiteQuality
SIO_000300: 1.548945e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9686
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15190
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516898246465627e-5
allele num: 65924
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.0e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.161e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

DP
type: SiteQuality
SIO_000300: 1.558629e6

QD
type: SiteQuality
SIO_000300: 8.82e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.0e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.861e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.031772980839195e-5
allele num: 65968
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9694
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.560562e6

MQ
type: SiteQuality
SIO_000300: 5.612e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.913e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-2

VQSLOD
type: SiteQuality
SIO_000300: -9.767e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.94e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6430
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.58732212160414e-4
allele num: 15460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514325519413653e-5
allele num: 66036
num of homozygotes: 0

African
type: Population
allele count: 0
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allele num: 9702
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-1

InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.564142e6

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 4.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.17e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9702
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514325519413653e-5
allele num: 66036
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
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allele num: 8610
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MQRankSum
type: SiteQuality
SIO_000300: 4.08e-1

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.564142e6

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 5.17e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 238

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 222
allele frequency: 3.360886547370334e-3
allele num: 66054
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15520
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.665511265164645e-5
allele num: 11540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 14
allele frequency: 2.176616915422886e-3
allele num: 6432
num of homozygotes: 1

Other
type: Population
allele count: 2
allele frequency: 2.309468822170901e-3
allele num: 866
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.030715316429602e-4
allele num: 9702
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.171e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.34e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.03e-1

DP
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.964e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.48e-1

VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 97
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1494
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9706
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.396315722144045e-5
allele num: 15634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66104
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.951e1

FS
type: SiteQuality
SIO_000300: 1.283e0

MQRankSum
type: SiteQuality
SIO_000300: -9.9e-1

DP
type: SiteQuality
SIO_000300: 1.565958e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.055e0

VQSLOD
type: SiteQuality
SIO_000300: -1.339e0

QD
type: SiteQuality
SIO_000300: 1.554e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.114e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15650
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-5
allele num: 66120
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9706
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.404e1

VQSLOD
type: SiteQuality
SIO_000300: -1.87e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.034e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.033e0

FS
type: SiteQuality
SIO_000300: 2.085e0

DP
type: SiteQuality
SIO_000300: 1.566121e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.66e-1

MQ
type: SiteQuality
SIO_000300: 5.908e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.79e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15662
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9706
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512310205069264e-5
allele num: 66124
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

DP
type: SiteQuality
SIO_000300: 1.566554e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.713e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e0

QD
type: SiteQuality
SIO_000300: 1.009e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.148e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.776e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 41

South Asian
type: Population
allele count: 12
allele frequency: 7.646234229641901e-4
allele num: 15694
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9704
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6346
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66092
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

East Asian
type: Population
allele count: 30
allele frequency: 3.483511379470506e-3
allele num: 8612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.03e-1

QD
type: SiteQuality
SIO_000300: 8.43e0

FS
type: SiteQuality
SIO_000300: 1.785e0

MQRankSum
type: SiteQuality
SIO_000300: 3.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.17e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 1.56705e6

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 158
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GenotypeQuality
all individuals: 127
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66108
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9706
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15716
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.74e0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

DP
type: SiteQuality
SIO_000300: 1.566445e6

MQ
type: SiteQuality
SIO_000300: 5.896e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.24e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.009e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.582e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

GenotypeQuality
all individuals: 156
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 65
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 16

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 90
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variant carriers: 0

GenotypeQuality
all individuals: 46547
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 16
allele frequency: 1.388165885823356e-3
allele num: 11526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15728
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9702
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66114
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6310
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -8.46e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

DP
type: SiteQuality
SIO_000300: 1.566713e6

QD
type: SiteQuality
SIO_000300: 1.043e1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.43e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6302
num of homozygotes: 0

African
type: Population
allele count: 367
allele frequency: 3.779608650875386e-2
allele num: 9710
num of homozygotes: 11

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.564525401676299e-5
allele num: 66098
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.358896095637798e-5
allele num: 15726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Latino
type: Population
allele count: 26
allele frequency: 2.256944444444444e-3
allele num: 11520
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.22e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.73e-2

MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
SIO_000300: 2.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

DP
type: SiteQuality
SIO_000300: 1.577435e6

QD
type: SiteQuality
SIO_000300: 1.287e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1029
bin: 7.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.512813530604218e-4
allele num: 66102
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.35970490969219e-5
allele num: 15724
num of homozygotes: 0

African
type: Population
allele count: 452
allele frequency: 4.657873042044518e-2
allele num: 9704
num of homozygotes: 9

Latino
type: Population
allele count: 9
allele frequency: 7.8125e-4
allele num: 11520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6292
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.49e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.44e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.33e1

DP
type: SiteQuality
SIO_000300: 1.578988e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 30

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 223
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GenotypeQuality
all individuals: 71
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GenotypeQuality
all individuals: 214
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GenotypeQuality
all individuals: 6325
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.176470588235294e-3
allele num: 850
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162250116225012e-4
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 3.6427660737053e-4
allele num: 65884
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.716875871687587e-5
allele num: 11472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6172
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.932740626207963e-4
allele num: 15522
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e-1

FS
type: SiteQuality
SIO_000300: 5.570000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.55611e6

MQ
type: SiteQuality
SIO_000300: 5.965e1

MQRankSum
type: SiteQuality
SIO_000300: 5.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 9.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.57e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.79e0

QD
type: SiteQuality
SIO_000300: 1.121e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

GenotypeQuality
all individuals: 46036
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1406
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1951
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6316
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1700
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1018
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518556763651825e-5
allele num: 65852
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9642
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.486750348675035e-4
allele num: 11472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6154
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15498
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.9e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQ
type: SiteQuality
SIO_000300: 5.972e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.9e-2

QD
type: SiteQuality
SIO_000300: 1.312e1

MQRankSum
type: SiteQuality
SIO_000300: -1.32e-1

DP
type: SiteQuality
SIO_000300: 1.554392e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.86e-1

FS
type: SiteQuality
SIO_000300: 3.775e0

GenotypeQuality
all individuals: 81
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 230
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1700
bin: 9.75e1
variant carriers: 5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 471
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variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.315962626661403e-4
allele num: 15198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6060
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.575263077626963e-5
allele num: 65570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.4e-1

DP
type: SiteQuality
SIO_000300: 1.540405e6

VQSLOD
type: SiteQuality
SIO_000300: 2.79e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

FS
type: SiteQuality
SIO_000300: 1.837e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

QD
type: SiteQuality
SIO_000300: 1.276e1

GenotypeQuality
all individuals: 189
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
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GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 2904
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GenotypeQuality
all individuals: 998
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variant carriers: 0

GenotypeQuality
all individuals: 6170
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 468
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variant carriers: 0

GenotypeQuality
all individuals: 211
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variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44424
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.053621595211921e-5
allele num: 65496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6044
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9560
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11406
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.641310089804543e-4
allele num: 15144
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.951e1

FS
type: SiteQuality
SIO_000300: 6.155e0

VQSLOD
type: SiteQuality
SIO_000300: 5.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQRankSum
type: SiteQuality
SIO_000300: 3.51e-1

QD
type: SiteQuality
SIO_000300: 1.107e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

DP
type: SiteQuality
SIO_000300: 1.537162e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.27e-1

GenotypeQuality
all individuals: 153
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1325
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
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variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 72
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variant carriers: 0

GenotypeQuality
all individuals: 42272
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 212
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 460
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variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5968
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5884
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.541497101985448e-5
allele num: 64872
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14728
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

VQSLOD
type: SiteQuality
SIO_000300: 8.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

FS
type: SiteQuality
SIO_000300: 8.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e-1

DP
type: SiteQuality
SIO_000300: 1.512413e6

MQRankSum
type: SiteQuality
SIO_000300: -4.47e-1

QD
type: SiteQuality
SIO_000300: 1.219e1

GenotypeQuality
all individuals: 1315
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4424
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 376
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variant carriers: 0

GenotypeQuality
all individuals: 215
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GenotypeQuality
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GenotypeQuality
all individuals: 42100
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5878
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.825006825006825e-5
allele num: 14652
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.176470588235294e-4
allele num: 8500
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.05999576001696e-4
allele num: 9434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11274
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.542971763616726e-5
allele num: 64810
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.508169e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.25e0

VQSLOD
type: SiteQuality
SIO_000300: 9.399999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.96e-1

QD
type: SiteQuality
SIO_000300: 1.38e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
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variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 414
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GenotypeQuality
all individuals: 375
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GenotypeQuality
all individuals: 224
bin: 7.5e0
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GenotypeQuality
all individuals: 1693
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 212
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variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4549
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5946
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.544306143249838e-5
allele num: 64754
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.777e0

DP
type: SiteQuality
SIO_000300: 1.504975e6

MQRankSum
type: SiteQuality
SIO_000300: -1.266e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

QD
type: SiteQuality
SIO_000300: 1.765e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.331e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -7.433999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.15e-1

GenotypeQuality
all individuals: 86
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
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variant carriers: 0

GenotypeQuality
all individuals: 235
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 40910
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GenotypeQuality
all individuals: 209
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GenotypeQuality
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GenotypeQuality
all individuals: 449
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GenotypeQuality
all individuals: 273
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 473
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variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5808
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11196
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.976419701409237e-5
allele num: 14334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64380
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.078e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 9.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.39e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.12e1

FS
type: SiteQuality
SIO_000300: 1.0307e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.85e-1

DP
type: SiteQuality
SIO_000300: 1.488578e6

GenotypeQuality
all individuals: 40306
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1693
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 210
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variant carriers: 0

GenotypeQuality
all individuals: 69
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GenotypeQuality
all individuals: 1265
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GenotypeQuality
all individuals: 32
bin: 2.5e0
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GenotypeQuality
all individuals: 5793
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GenotypeQuality
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GenotypeQuality
all individuals: 259
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 824
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variant carriers: 0

GenotypeQuality
all individuals: 253
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variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5774
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11164
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.410835214446952e-4
allele num: 14176
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.54e-1

FS
type: SiteQuality
SIO_000300: 5.845e0

QD
type: SiteQuality
SIO_000300: 2.806e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.94e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.296e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.479071e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.54e-1

GenotypeQuality
all individuals: 889
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 239
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variant carriers: 0

GenotypeQuality
all individuals: 52
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variant carriers: 0

GenotypeQuality
all individuals: 6257
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GenotypeQuality
all individuals: 40224
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GenotypeQuality
all individuals: 64
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variant carriers: 0

GenotypeQuality
all individuals: 437
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GenotypeQuality
all individuals: 477
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GenotypeQuality
all individuals: 1692
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GenotypeQuality
all individuals: 228
bin: 4.75e1
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GenotypeQuality
all individuals: 193
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GenotypeQuality
all individuals: 1232
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 5.25e1
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GenotypeQuality
all individuals: 908
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11138
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5736
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.075500107550011e-4
allele num: 9298
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63996
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.181e0

MQRankSum
type: SiteQuality
SIO_000300: -4.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.24e-1

DP
type: SiteQuality
SIO_000300: 1.470942e6

FS
type: SiteQuality
SIO_000300: 1.62e0

QD
type: SiteQuality
SIO_000300: 1.038e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.3e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9110
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5600
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.775853285787061e-5
allele num: 62816
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10852
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

East Asian
type: Population
allele count: 31
allele frequency: 3.768538779479698e-3
allele num: 8226
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.72e-1

DP
type: SiteQuality
SIO_000300: 1.423188e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e-1

BaseQRankSum
type: SiteQuality
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VQSLOD
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SIO_000300: 3.93e0

MQRankSum
type: SiteQuality
SIO_000300: 5.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.38e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59726
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.231807704972011e-5
allele num: 12148
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5180
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10040
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.278933e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.49e-1

FS
type: SiteQuality
SIO_000300: 2.831e0

QD
type: SiteQuality
SIO_000300: 1.838e1

VQSLOD
type: SiteQuality
SIO_000300: -7.896e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.113e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.186e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.49e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11956
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59206
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.345765892563922e-4
allele num: 8526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5134
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9948
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e-2

DP
type: SiteQuality
SIO_000300: 1.256074e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.73e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.307e0

MQRankSum
type: SiteQuality
SIO_000300: -5.87e-1

QD
type: SiteQuality
SIO_000300: 1.492e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 690
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.51123595505618e-5
allele num: 56960
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9394
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.218026796589525e-4
allele num: 8210
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11166
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4888
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

DP
type: SiteQuality
SIO_000300: 1.154257e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.259e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.428e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4646
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6868
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.11632060727841e-4
allele num: 8958
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7916
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 19
allele frequency: 3.464498012472193e-4
allele num: 54842
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.606147934678194e-5
allele num: 10410
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.34e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e0

VQSLOD
type: SiteQuality
SIO_000300: 1.92e0

FS
type: SiteQuality
SIO_000300: 2.756e0

MQRankSum
type: SiteQuality
SIO_000300: -2.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e-1

DP
type: SiteQuality
SIO_000300: 1.048659e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8914
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 54494
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.940993788819876e-4
allele num: 10304
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 664
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.039e0

VQSLOD
type: SiteQuality
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MQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: -5.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 6.63e-1

ReadPosRankSum
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.971e0

DP
type: SiteQuality
SIO_000300: 1.030845e6

QD
type: SiteQuality
SIO_000300: 1.317e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 3.759963904346518e-5
allele num: 53192
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
type: Population
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allele frequency: 0.0e0
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Latino
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African
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Other
type: Population
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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MQRankSum
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FS
type: SiteQuality
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VQSLOD
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QD
type: SiteQuality
SIO_000300: 1.024e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.102430409553444e-5
allele num: 47564
num of homozygotes: 0

East Asian
type: Population
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Other
type: Population
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3852
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.25e-2

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.905e0

VQSLOD
type: SiteQuality
SIO_000300: -7.911e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.8e0

DP
type: SiteQuality
SIO_000300: 8.36779e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.18e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6414
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.465416178194607e-4
allele num: 6824
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5040
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.048e1

FS
type: SiteQuality
SIO_000300: 5.871e0

VQSLOD
type: SiteQuality
SIO_000300: -3.85e-2

MQRankSum
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BaseQRankSum
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SIO_000300: -2.936e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.243e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.66e-2

DP
type: SiteQuality
SIO_000300: 7.87281e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6222
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4822
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.408361832281682e-5
allele num: 41522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6390
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.79e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.75e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.67e-1

QD
type: SiteQuality
SIO_000300: 1.43e1

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9874
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.074113856068743e-4
allele num: 9310
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.174536058256989e-4
allele num: 8514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.677226e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e0

QD
type: SiteQuality
SIO_000300: 1.424e1

FS
type: SiteQuality
SIO_000300: 7.978e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.46e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.072501072501073e-4
allele num: 9324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9874
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63648
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.66e0

DP
type: SiteQuality
SIO_000300: 2.680421e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

QD
type: SiteQuality
SIO_000300: 3.042e1

VQSLOD
type: SiteQuality
SIO_000300: -2.529e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.72e-1

FS
type: SiteQuality
SIO_000300: 5.479e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.006420545746388e-4
allele num: 9968
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63724
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.55e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-2

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 7.973e0

DP
type: SiteQuality
SIO_000300: 2.685438e6

QD
type: SiteQuality
SIO_000300: 1.499e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9354
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 6.994404476418865e-4
allele num: 10008
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.568676664365941e-5
allele num: 63748
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
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Other
type: Population
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allele frequency: 1.259445843828715e-3
allele num: 794
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.317e1

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.96e-1

DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.959e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.22e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63830
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
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African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
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South Asian
type: Population
allele count: 1
allele frequency: 9.928514694201747e-5
allele num: 10072
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 2.221e1

BaseQRankSum
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MQRankSum
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FS
type: SiteQuality
SIO_000300: 2.599e0

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 16

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.096388184067913e-4
allele num: 63846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.093314763231198e-4
allele num: 11488
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.817396426467701e-5
allele num: 10186
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.53e-1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.692322e6

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.974e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.349e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.366219169528567e-5
allele num: 64060
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.974e1

QD
type: SiteQuality
SIO_000300: 1.184e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.113e0

DP
type: SiteQuality
SIO_000300: 2.698573e6

FS
type: SiteQuality
SIO_000300: 2.162e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 185

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.2531328320802e-3
allele num: 798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 12
allele frequency: 1.815431164901664e-3
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10582
num of homozygotes: 0

Latino
type: Population
allele count: 23
allele frequency: 2.0e-3
allele num: 11500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 144
allele frequency: 2.246980619792154e-3
allele num: 64086
num of homozygotes: 0

African
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allele count: 5
allele frequency: 5.318017443097213e-4
allele num: 9402
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

DP
type: SiteQuality
SIO_000300: 2.703406e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.33e-1

MQ
type: SiteQuality
SIO_000300: 5.997e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.48e-1

QD
type: SiteQuality
SIO_000300: 1.65e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10986
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9452
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.606429192006951e-4
allele num: 11510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 2.021584300065313e-4
allele num: 64306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.265e0

MQRankSum
type: SiteQuality
SIO_000300: 9.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.92e-1

DP
type: SiteQuality
SIO_000300: 2.704449e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e-1

FS
type: SiteQuality
SIO_000300: 4.124e0

QD
type: SiteQuality
SIO_000300: 1.007e1

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

South Asian
type: Population
allele count: 2
allele frequency: 1.795332136445242e-4
allele num: 11140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.553953257086027e-5
allele num: 64352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.064e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.92e0

DP
type: SiteQuality
SIO_000300: 2.705728e6

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

QD
type: SiteQuality
SIO_000300: 1.213e1

VQSLOD
type: SiteQuality
SIO_000300: 9.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.89e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 26

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 27
allele frequency: 4.189034039780309e-4
allele num: 64454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11254
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.06e0

MQRankSum
type: SiteQuality
SIO_000300: 4.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.518e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.01e-1

DP
type: SiteQuality
SIO_000300: 2.707497e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521560512461581e-5
allele num: 65722
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9674
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14222
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.917e0

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.65e-1

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.899e1

VQSLOD
type: SiteQuality
SIO_000300: -1.041e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65756
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9674
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.971556051310653e-5
allele num: 14344
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.591e0

QD
type: SiteQuality
SIO_000300: 1.208e1

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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DP
type: SiteQuality
SIO_000300: 2.754347e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.57e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66206
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.537205081669691e-4
allele num: 15428
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
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MQ
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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FS
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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SIO_000300: -3.93e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2450
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37000
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 50
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2257
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2925
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1411
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8988
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1596
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9746
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15688
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.525569467491326e-5
allele num: 66290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.295e0

QD
type: SiteQuality
SIO_000300: 1.215e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.979e0

DP
type: SiteQuality
SIO_000300: 2.775692e6

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.43e-1

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1419
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2456
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2263
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1595
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36998
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 52
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9559
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16302
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502900598154438e-5
allele num: 66538
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.35e1

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.144e0

DP
type: SiteQuality
SIO_000300: 2.787012e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.01e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

FS
type: SiteQuality
SIO_000300: 1.953e0

GenotypeQuality
all individuals: 46
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2264
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1593
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9582
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2923
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2540
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37003
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 49
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2451
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160362032954282e-4
allele num: 8618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66544
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.406e1

DP
type: SiteQuality
SIO_000300: 2.789253e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

FS
type: SiteQuality
SIO_000300: 1.853e0

MQRankSum
type: SiteQuality
SIO_000300: -2.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQ
type: SiteQuality
SIO_000300: 5.975e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0