3-47891601-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47891601
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47891601
    reference: chr 3
allele count: 1
allele frequency: 1.847609193703348e-5
allele num: 54124
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000343442
  ensembl transcript: ENST00000348968
  gene symbol: DHX30
  hgvsc: ENST00000348968.4:c.3492T>C
  hgvsp: ENST00000348968.4:c.3492T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000392601
  ensembl transcript: ENST00000446256
  gene symbol: DHX30
  hgvsc: ENST00000446256.2:c.3459T>C
  hgvsp: ENST00000446256.2:c.3459T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000405620
  ensembl transcript: ENST00000445061
  gene symbol: DHX30
  hgvsc: ENST00000445061.1:c.3576T>C
  hgvsp: ENST00000445061.1:c.3576T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000394682
  ensembl transcript: ENST00000457607
  gene symbol: DHX30
  hgvsc: ENST00000457607.1:c.3660T>C
  hgvsp: ENST00000457607.1:c.3660T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000379094
  ensembl transcript: ENST00000395745
  gene symbol: DHX30
  hgvsc: ENST00000395745.2:c.*3476T>C
  variant of: http://identifiers.org/hgnc/16716
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12994
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
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genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9406
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 1337
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1921
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 12
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala1192Ala
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

3-47891604-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47891604
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47891604
    reference: chr 3
allele count: 2
allele frequency: 3.768607499528924e-5
allele num: 53070
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000392601
  ensembl transcript: ENST00000446256
  gene symbol: DHX30
  hgvsc: ENST00000446256.2:c.3462C>T
  hgvsp: ENST00000446256.2:c.3462C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000405620
  ensembl transcript: ENST00000445061
  gene symbol: DHX30
  hgvsc: ENST00000445061.1:c.3579C>T
  hgvsp: ENST00000445061.1:c.3579C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000394682
  ensembl transcript: ENST00000457607
  gene symbol: DHX30
  hgvsc: ENST00000457607.1:c.3663C>T
  hgvsp: ENST00000457607.1:c.3663C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000379094
  ensembl transcript: ENST00000395745
  gene symbol: DHX30
  hgvsc: ENST00000395745.2:c.*3479C>T
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000343442
  ensembl transcript: ENST00000348968
  gene symbol: DHX30
  hgvsc: ENST00000348968.4:c.3495C>T
  hgvsp: ENST00000348968.4:c.3495C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16716
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8929
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 3038
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genotype depth: GenotypeDepth
  all individuals: 1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 12
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genotype quality: GenotypeQuality
  all individuals: 14
  bin: 8.75e1
  variant carriers: 1
hgvs: p.Asp1193Asp
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff

3-47891605-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47891605
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47891605
    reference: chr 3
allele count: 1
allele frequency: 1.881113619262603e-5
allele num: 53160
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000405620
  ensembl transcript: ENST00000445061
  gene symbol: DHX30
  hgvsc: ENST00000445061.1:c.3580G>A
  hgvsp: ENSP00000405620.1:p.Asp1194Asn
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000343442
  ensembl transcript: ENST00000348968
  gene symbol: DHX30
  hgvsc: ENST00000348968.4:c.3496G>A
  hgvsp: ENSP00000343442.4:p.Asp1166Asn
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000394682
  ensembl transcript: ENST00000457607
  gene symbol: DHX30
  hgvsc: ENST00000457607.1:c.3664G>A
  hgvsp: ENSP00000394682.1:p.Asp1222Asn
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000392601
  ensembl transcript: ENST00000446256
  gene symbol: DHX30
  hgvsc: ENST00000446256.2:c.3463G>A
  hgvsp: ENSP00000392601.2:p.Asp1155Asn
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000379094
  ensembl transcript: ENST00000395745
  gene symbol: DHX30
  hgvsc: ENST00000395745.2:c.*3480G>A
  variant of: http://identifiers.org/hgnc/16716
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 121
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  variant carriers: 0
hgvs: p.Asp1194Asn
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

3-47891607-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47891607
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47891607
    reference: chr 3
allele count: 4
allele frequency: 7.628346937218705e-5
allele num: 52436
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000405620
  ensembl transcript: ENST00000445061
  gene symbol: DHX30
  hgvsc: ENST00000445061.1:c.3582C>T
  hgvsp: ENST00000445061.1:c.3582C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000394682
  ensembl transcript: ENST00000457607
  gene symbol: DHX30
  hgvsc: ENST00000457607.1:c.3666C>T
  hgvsp: ENST00000457607.1:c.3666C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000343442
  ensembl transcript: ENST00000348968
  gene symbol: DHX30
  hgvsc: ENST00000348968.4:c.3498C>T
  hgvsp: ENST00000348968.4:c.3498C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000379094
  ensembl transcript: ENST00000395745
  gene symbol: DHX30
  hgvsc: ENST00000395745.2:c.*3482C>T
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000392601
  ensembl transcript: ENST00000446256
  gene symbol: DHX30
  hgvsc: ENST00000446256.2:c.3465C>T
  hgvsp: ENST00000446256.2:c.3465C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16716
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8176
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1353
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp1194Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

3-47891612-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47891612
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47891612
    reference: chr 3
allele count: 1
allele frequency: 1.963556393339617e-5
allele num: 50928
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000405620
  ensembl transcript: ENST00000445061
  gene symbol: DHX30
  hgvsc: ENST00000445061.1:c.*2C>G
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000392601
  ensembl transcript: ENST00000446256
  gene symbol: DHX30
  hgvsc: ENST00000446256.2:c.*2C>G
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000343442
  ensembl transcript: ENST00000348968
  gene symbol: DHX30
  hgvsc: ENST00000348968.4:c.*2C>G
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000394682
  ensembl transcript: ENST00000457607
  gene symbol: DHX30
  hgvsc: ENST00000457607.1:c.*2C>G
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000379094
  ensembl transcript: ENST00000395745
  gene symbol: DHX30
  hgvsc: ENST00000395745.2:c.*3487C>G
  variant of: http://identifiers.org/hgnc/16716
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2935
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7142
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28510
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6007
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14060
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9056
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1831
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37745
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1165
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS

3-47891612-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47891612
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47891612
    reference: chr 3
allele count: 4
allele frequency: 7.854225573358467e-5
allele num: 50928
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000392601
  ensembl transcript: ENST00000446256
  gene symbol: DHX30
  hgvsc: ENST00000446256.2:c.*2C>T
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000394682
  ensembl transcript: ENST00000457607
  gene symbol: DHX30
  hgvsc: ENST00000457607.1:c.*2C>T
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000379094
  ensembl transcript: ENST00000395745
  gene symbol: DHX30
  hgvsc: ENST00000395745.2:c.*3487C>T
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000343442
  ensembl transcript: ENST00000348968
  gene symbol: DHX30
  hgvsc: ENST00000348968.4:c.*2C>T
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000405620
  ensembl transcript: ENST00000445061
  gene symbol: DHX30
  hgvsc: ENST00000445061.1:c.*2C>T
  variant of: http://identifiers.org/hgnc/16716
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14060
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7142
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6007
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2935
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28510
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6183
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9056
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37745
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1165
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1831
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 8.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD

3-47891613-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47891613
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47891613
    reference: chr 3
allele count: 1
allele frequency: 1.975737938119888e-5
allele num: 50614
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000392601
  ensembl transcript: ENST00000446256
  gene symbol: DHX30
  hgvsc: ENST00000446256.2:c.*3C>G
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000394682
  ensembl transcript: ENST00000457607
  gene symbol: DHX30
  hgvsc: ENST00000457607.1:c.*3C>G
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000379094
  ensembl transcript: ENST00000395745
  gene symbol: DHX30
  hgvsc: ENST00000395745.2:c.*3488C>G
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000405620
  ensembl transcript: ENST00000445061
  gene symbol: DHX30
  hgvsc: ENST00000445061.1:c.*3C>G
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000343442
  ensembl transcript: ENST00000348968
  gene symbol: DHX30
  hgvsc: ENST00000348968.4:c.*3C>G
  variant of: http://identifiers.org/hgnc/16716
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6327
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28415
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14274
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2907
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6741
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1287
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genotype quality: GenotypeQuality
  all individuals: 642
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 1844
  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 507
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 37747
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 12
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

3-47891616-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47891616
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47891616
    reference: chr 3
allele count: 2
allele frequency: 4.029171199484266e-5
allele num: 49638
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000405620
  ensembl transcript: ENST00000445061
  gene symbol: DHX30
  hgvsc: ENST00000445061.1:c.*6G>T
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000343442
  ensembl transcript: ENST00000348968
  gene symbol: DHX30
  hgvsc: ENST00000348968.4:c.*6G>T
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000379094
  ensembl transcript: ENST00000395745
  gene symbol: DHX30
  hgvsc: ENST00000395745.2:c.*3491G>T
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000394682
  ensembl transcript: ENST00000457607
  gene symbol: DHX30
  hgvsc: ENST00000457607.1:c.*6G>T
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000392601
  ensembl transcript: ENST00000446256
  gene symbol: DHX30
  hgvsc: ENST00000446256.2:c.*6G>T
  variant of: http://identifiers.org/hgnc/16716
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14524
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6165
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28394
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
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genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1859
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7016
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38016
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7967
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1189
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ

3-47891617-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47891617
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47891617
    reference: chr 3
allele count: 1
allele frequency: 2.018489362561059e-5
allele num: 49542
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000405620
  ensembl transcript: ENST00000445061
  gene symbol: DHX30
  hgvsc: ENST00000445061.1:c.*7C>T
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000343442
  ensembl transcript: ENST00000348968
  gene symbol: DHX30
  hgvsc: ENST00000348968.4:c.*7C>T
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000394682
  ensembl transcript: ENST00000457607
  gene symbol: DHX30
  hgvsc: ENST00000457607.1:c.*7C>T
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000392601
  ensembl transcript: ENST00000446256
  gene symbol: DHX30
  hgvsc: ENST00000446256.2:c.*7C>T
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000379094
  ensembl transcript: ENST00000395745
  gene symbol: DHX30
  hgvsc: ENST00000395745.2:c.*3492C>T
  variant of: http://identifiers.org/hgnc/16716
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6847
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14489
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6142
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38261
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1824
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7031
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: C
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

3-47891620-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47891620
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47891620
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 47880
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000343442
  ensembl transcript: ENST00000348968
  gene symbol: DHX30
  hgvsc: ENST00000348968.4:c.*10C>G
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000392601
  ensembl transcript: ENST00000446256
  gene symbol: DHX30
  hgvsc: ENST00000446256.2:c.*10C>G
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000394682
  ensembl transcript: ENST00000457607
  gene symbol: DHX30
  hgvsc: ENST00000457607.1:c.*10C>G
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000379094
  ensembl transcript: ENST00000395745
  gene symbol: DHX30
  hgvsc: ENST00000395745.2:c.*3495C>G
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000405620
  ensembl transcript: ENST00000445061
  gene symbol: DHX30
  hgvsc: ENST00000445061.1:c.*10C>G
  variant of: http://identifiers.org/hgnc/16716
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4913
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15054
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27961
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1289
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1518
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37552
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1906
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-47891660-T-TAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47891660
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47891662
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 18948
alternate allele: TAA
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000394682
  ensembl transcript: ENST00000457607
  gene symbol: DHX30
  hgvsc: ENST00000457607.1:c.*52_*53dupAA
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000405620
  ensembl transcript: ENST00000445061
  gene symbol: DHX30
  hgvsc: ENST00000445061.1:c.*52_*53dupAA
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000392601
  ensembl transcript: ENST00000446256
  gene symbol: DHX30
  hgvsc: ENST00000446256.2:c.*52_*53dupAA
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000343442
  ensembl transcript: ENST00000348968
  gene symbol: DHX30
  hgvsc: ENST00000348968.4:c.*52_*53dupAA
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000379094
  ensembl transcript: ENST00000395745
  gene symbol: DHX30
  hgvsc: ENST00000395745.2:c.*3537_*3538dupAA
  variant of: http://identifiers.org/hgnc/16716
canonical: true
consequence: 3' UTR
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19166
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28643
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7675
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 19870
  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4431
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 250
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1657
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 773
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

3-47891660-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47891660
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47891661
    reference: chr 3
allele count: 1
allele frequency: 5.277601857715854e-5
allele num: 18948
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000379094
  ensembl transcript: ENST00000395745
  gene symbol: DHX30
  hgvsc: ENST00000395745.2:c.*3538dupA
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000405620
  ensembl transcript: ENST00000445061
  gene symbol: DHX30
  hgvsc: ENST00000445061.1:c.*53dupA
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000392601
  ensembl transcript: ENST00000446256
  gene symbol: DHX30
  hgvsc: ENST00000446256.2:c.*53dupA
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000394682
  ensembl transcript: ENST00000457607
  gene symbol: DHX30
  hgvsc: ENST00000457607.1:c.*53dupA
  variant of: http://identifiers.org/hgnc/16716
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000132153
  ensembl protein: ENSP00000343442
  ensembl transcript: ENST00000348968
  gene symbol: DHX30
  hgvsc: ENST00000348968.4:c.*53dupA
  variant of: http://identifiers.org/hgnc/16716
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7675
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28643
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19870
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4431
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1636
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8909
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10792
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD

3-47894237-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894237
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894237
    reference: chr 3
allele count: 1
allele frequency: 8.965393580778196e-5
allele num: 11154
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.*45G>C
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*187G>C
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*285G>C
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.*45G>C
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*285G>C
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.*45G>C
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*285G>C
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.*45G>C
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*285G>C
  variant of: http://identifiers.org/hgnc/6862
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2521
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21426
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8628
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum

3-47894247-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894247
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894247
    reference: chr 3
allele count: 1
allele frequency: 8.662508662508663e-5
allele num: 11544
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*177C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*275C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.*35C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.*35C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.*35C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.*35C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*275C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*275C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*275C>T
  variant of: http://identifiers.org/hgnc/6862
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22007
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2594
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16228
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP

3-47894258-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894258
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894258
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 11906
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.*24G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.*24G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.*24G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.*24G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*264G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*264G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*166G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*264G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*264G>A
  variant of: http://identifiers.org/hgnc/6862
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2804
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22971
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2340
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum

3-47894263-C-CG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894263
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894264
    reference: chr 3
allele count: 5
allele frequency: 4.114549045424622e-4
allele num: 12152
alternate allele: CG
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*258dupC
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.*18dupC
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*160dupC
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*258dupC
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*258dupC
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.*18dupC
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.*18dupC
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.*18dupC
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*258dupC
  variant of: http://identifiers.org/hgnc/6862
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23708
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3614
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2378
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19518
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS

3-47894263-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894263
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894263
    reference: chr 3
allele count: 8
allele frequency: 6.583278472679394e-4
allele num: 12152
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*259G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.*19G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.*19G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*259G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*259G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*259G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.*19G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.*19G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*161G>A
  variant of: http://identifiers.org/hgnc/6862
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3614
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23708
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4064
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19518
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

3-47894267-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894267
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894267
    reference: chr 3
allele count: 3
allele frequency: 2.415070037031074e-4
allele num: 12422
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.*15G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*255G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.*15G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.*15G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*255G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*255G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.*15G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*255G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*157G>A
  variant of: http://identifiers.org/hgnc/6862
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24979
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3023
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4264
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21617
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3230
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

3-47894275-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894275
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894275
    reference: chr 3
allele count: 21
allele frequency: 1.638832526923677e-3
allele num: 12814
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*247G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.*7G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*247G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.*7G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*247G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*247G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.*7G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.*7G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*149G>A
  variant of: http://identifiers.org/hgnc/6862
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 27012
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2474
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

3-47894286-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894286
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894286
    reference: chr 3
allele count: 149
allele frequency: 1.128958933171693e-2
allele num: 13198
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*236A>G
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.746A>G
  hgvsp: ENSP00000415130.2:p.His249Arg
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1388A>G
  hgvsp: ENSP00000334770.5:p.His463Arg
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3404A>G
  hgvsp: ENSP00000379083.3:p.His1135Arg
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*236A>G
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*138A>G
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*236A>G
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2483A>G
  hgvsp: ENSP00000409731.2:p.His828Arg
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*236A>G
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 4111
  bin: 2.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 1.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 28581
  bin: 2.5e0
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 2.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 3.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 3920
  bin: 7.5e0
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3131
  bin: 2.5e0
  variant carriers: 1
hgvs: p.His249Arg
num of homozygotes: 1
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

3-47894295-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894295
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894295
    reference: chr 3
allele count: 1
allele frequency: 7.425007425007424e-5
allele num: 13468
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2474G>A
  hgvsp: ENSP00000409731.2:p.Arg825Gln
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*227G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*227G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3395G>A
  hgvsp: ENSP00000379083.3:p.Arg1132Gln
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*129G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*227G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.737G>A
  hgvsp: ENSP00000415130.2:p.Arg246Gln
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*227G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1379G>A
  hgvsp: ENSP00000334770.5:p.Arg460Gln
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4492
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4093
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3567
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg246Gln
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
reference allele: C
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

3-47894296-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894296
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894296
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 13546
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.736C>T
  hgvsp: ENSP00000415130.2:p.Arg246Trp
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*226C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2473C>T
  hgvsp: ENSP00000409731.2:p.Arg825Trp
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*226C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1378C>T
  hgvsp: ENSP00000334770.5:p.Arg460Trp
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*226C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3394C>T
  hgvsp: ENSP00000379083.3:p.Arg1132Trp
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*226C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*128C>T
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4711
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31599
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28884
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg246Trp
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

3-47894299-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894299
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894299
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 13660
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1375T>C
  hgvsp: ENSP00000334770.5:p.Ser459Pro
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*223T>C
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2470T>C
  hgvsp: ENSP00000409731.2:p.Ser824Pro
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*223T>C
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3391T>C
  hgvsp: ENSP00000379083.3:p.Ser1131Pro
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*125T>C
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*223T>C
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.733T>C
  hgvsp: ENSP00000415130.2:p.Ser245Pro
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*223T>C
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4106
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32368
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5131
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4719
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4099
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser245Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

3-47894310-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894310
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894310
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 14068
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3380T>C
  hgvsp: ENSP00000379083.3:p.Leu1127Pro
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*212T>C
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.722T>C
  hgvsp: ENSP00000415130.2:p.Leu241Pro
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*212T>C
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*212T>C
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2459T>C
  hgvsp: ENSP00000409731.2:p.Leu820Pro
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1364T>C
  hgvsp: ENSP00000334770.5:p.Leu455Pro
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*212T>C
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*114T>C
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34042
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6920
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4010
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1189
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4728
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2825
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu241Pro
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: A
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

3-47894316-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894316
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894316
    reference: chr 3
allele count: 8
allele frequency: 5.616399887672002e-4
allele num: 14244
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*108G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3374G>A
  hgvsp: ENSP00000379083.3:p.Arg1125Gln
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1358G>A
  hgvsp: ENSP00000334770.5:p.Arg453Gln
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.716G>A
  hgvsp: ENSP00000415130.2:p.Arg239Gln
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*206G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*206G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*206G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2453G>A
  hgvsp: ENSP00000409731.2:p.Arg818Gln
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*206G>A
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34489
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8525
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3893
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4672
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg239Gln
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP

3-47894317-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894317
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894317
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 14438
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*205C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.715C>T
  hgvsp: ENSP00000415130.2:p.Arg239Trp
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*205C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*205C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3373C>T
  hgvsp: ENSP00000379083.3:p.Arg1125Trp
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*205C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1357C>T
  hgvsp: ENSP00000334770.5:p.Arg453Trp
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2452C>T
  hgvsp: ENSP00000409731.2:p.Arg818Trp
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*107C>T
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3823
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34463
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9125
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32072
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg239Trp
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

3-47894324-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894324
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894324
    reference: chr 3
allele count: 2
allele frequency: 1.335291761249833e-4
allele num: 14978
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*198G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1350G>A
  hgvsp: ENST00000335271.5:c.1350G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*100G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.708G>A
  hgvsp: ENST00000441748.2:c.708G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3366G>A
  hgvsp: ENST00000395734.3:c.3366G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*198G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2445G>A
  hgvsp: ENST00000420772.2:c.2445G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*198G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*198G>A
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3590
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33737
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11949
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2035
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser236Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum

3-47894332-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894332
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894332
    reference: chr 3
allele count: 4
allele frequency: 2.516039753428104e-4
allele num: 15898
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3358C>T
  hgvsp: ENSP00000379083.3:p.Pro1120Ser
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.700C>T
  hgvsp: ENSP00000415130.2:p.Pro234Ser
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*190C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2437C>T
  hgvsp: ENSP00000409731.2:p.Pro813Ser
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*92C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*190C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*190C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1342C>T
  hgvsp: ENSP00000334770.5:p.Pro448Ser
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*190C>T
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31164
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16409
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13840
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro234Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

3-47894335-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894335
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894335
    reference: chr 3
allele count: 1
allele frequency: 6.178942165101334e-5
allele num: 16184
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.697G>A
  hgvsp: ENSP00000415130.2:p.Gly233Ser
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2434G>A
  hgvsp: ENSP00000409731.2:p.Gly812Ser
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*187G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*187G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*187G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1339G>A
  hgvsp: ENSP00000334770.5:p.Gly447Ser
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*89G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3355G>A
  hgvsp: ENSP00000379083.3:p.Gly1119Ser
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*187G>A
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17835
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3323
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1200
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3840
  bin: 6.25e1
  variant carriers: 1
hgvs: p.Gly233Ser
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

3-47894336-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894336
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894336
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 16500
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*88C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2433C>T
  hgvsp: ENST00000420772.2:c.2433C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1338C>T
  hgvsp: ENST00000335271.5:c.1338C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.696C>T
  hgvsp: ENST00000441748.2:c.696C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*186C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*186C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3354C>T
  hgvsp: ENST00000395734.3:c.3354C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*186C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*186C>T
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 29281
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18838
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1639
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1181
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly232Gly
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

3-47894339-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894339
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894339
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 17400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1335T>A
  hgvsp: ENST00000335271.5:c.1335T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2430T>A
  hgvsp: ENST00000420772.2:c.2430T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.693T>A
  hgvsp: ENST00000441748.2:c.693T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*85T>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*183T>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*183T>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*183T>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3351T>A
  hgvsp: ENST00000395734.3:c.3351T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*183T>A
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3411
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26694
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21899
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro231Pro
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

3-47894346-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894346
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894346
    reference: chr 3
allele count: 1
allele frequency: 5.29829394934831e-5
allele num: 18874
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1328A>G
  hgvsp: ENSP00000334770.5:p.His443Arg
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*176A>G
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*176A>G
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*176A>G
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2423A>G
  hgvsp: ENSP00000409731.2:p.His808Arg
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.686A>G
  hgvsp: ENSP00000415130.2:p.His229Arg
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*176A>G
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3344A>G
  hgvsp: ENSP00000379083.3:p.His1115Arg
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*78A>G
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23195
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1308
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3716
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22295
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
hgvs: p.His229Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

3-47894348-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894348
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894347
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 19522
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1325delC
  hgvsp: ENSP00000334770.5:p.Pro442HisfsTer36
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2420delC
  hgvsp: ENSP00000409731.2:p.Pro807HisfsTer36
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*173delC
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*173delC
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3341delC
  hgvsp: ENSP00000379083.3:p.Pro1114HisfsTer36
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*173delC
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.683delC
  hgvsp: ENSP00000415130.2:p.Pro228HisfsTer36
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*173delC
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*75delC
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: frameshift
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3708
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3556
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26305
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21944
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1391
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23588
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3718
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro228HisfsTer36
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: TG
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP

3-47894349-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894349
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894349
    reference: chr 3
allele count: 1
allele frequency: 5.00150045013504e-5
allele num: 19994
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*173C>G
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.683C>G
  hgvsp: ENSP00000415130.2:p.Pro228Arg
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*173C>G
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2420C>G
  hgvsp: ENSP00000409731.2:p.Pro807Arg
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3341C>G
  hgvsp: ENSP00000379083.3:p.Pro1114Arg
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1325C>G
  hgvsp: ENSP00000334770.5:p.Pro442Arg
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*173C>G
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*173C>G
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*75C>G
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26775
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3585
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21459
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24302
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3755
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro228Arg
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

3-47894353-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894353
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894353
    reference: chr 3
allele count: 1
allele frequency: 4.622353702505316e-5
allele num: 21634
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*169C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2416C>T
  hgvsp: ENSP00000409731.2:p.Pro806Ser
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*169C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.679C>T
  hgvsp: ENSP00000415130.2:p.Pro227Ser
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*169C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*169C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3337C>T
  hgvsp: ENSP00000379083.3:p.Pro1113Ser
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1321C>T
  hgvsp: ENSP00000334770.5:p.Pro441Ser
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*71C>T
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28301
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4091
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19668
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1646
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26056
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro227Ser
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

3-47894355-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894355
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894355
    reference: chr 3
allele count: 9
allele frequency: 4.123900293255132e-4
allele num: 21824
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1319G>A
  hgvsp: ENSP00000334770.5:p.Arg440His
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.677G>A
  hgvsp: ENSP00000415130.2:p.Arg226His
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*167G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*167G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*167G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2414G>A
  hgvsp: ENSP00000409731.2:p.Arg805His
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3335G>A
  hgvsp: ENSP00000379083.3:p.Arg1112His
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*69G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*167G>A
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29199
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18390
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4428
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3791
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17806
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2110
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg226His
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

3-47894356-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894356
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894356
    reference: chr 3
allele count: 8
allele frequency: 3.477051460361613e-4
allele num: 23008
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.676C>T
  hgvsp: ENSP00000415130.2:p.Arg226Cys
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*166C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*166C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3334C>T
  hgvsp: ENSP00000379083.3:p.Arg1112Cys
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*68C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*166C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2413C>T
  hgvsp: ENSP00000409731.2:p.Arg805Cys
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1318C>T
  hgvsp: ENSP00000334770.5:p.Arg440Cys
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*166C>T
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30138
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4604
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17239
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1800
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3900
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg226Cys
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-47894358-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894358
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894358
    reference: chr 3
allele count: 8
allele frequency: 3.269042170644001e-4
allele num: 24472
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*164C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3332C>T
  hgvsp: ENSP00000379083.3:p.Ser1111Phe
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.674C>T
  hgvsp: ENSP00000415130.2:p.Ser225Phe
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1316C>T
  hgvsp: ENSP00000334770.5:p.Ser439Phe
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2411C>T
  hgvsp: ENSP00000409731.2:p.Ser804Phe
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*164C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*164C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*164C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*66C>T
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15974
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4813
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31057
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4214
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1065
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29214
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 999
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser225Phe
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

3-47894367-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894367
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894367
    reference: chr 3
allele count: 1
allele frequency: 3.543083900226757e-5
allele num: 28224
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*155A>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3323A>T
  hgvsp: ENSP00000379083.3:p.Asp1108Val
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*57A>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.665A>T
  hgvsp: ENSP00000415130.2:p.Asp222Val
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*155A>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2402A>T
  hgvsp: ENSP00000409731.2:p.Asp801Val
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*155A>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*155A>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1307A>T
  hgvsp: ENSP00000334770.5:p.Asp436Val
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5806
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33850
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11464
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1212
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4358
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31968
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asp222Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

3-47894368-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894368
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894368
    reference: chr 3
allele count: 2
allele frequency: 6.981290142418318e-5
allele num: 28648
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*154G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2401G>A
  hgvsp: ENSP00000409731.2:p.Asp801Asn
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*154G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*56G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.664G>A
  hgvsp: ENSP00000415130.2:p.Asp222Asn
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3322G>A
  hgvsp: ENSP00000379083.3:p.Asp1108Asn
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1306G>A
  hgvsp: ENSP00000334770.5:p.Asp436Asn
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*154G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*154G>A
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6012
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34049
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10864
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4803
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10735
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32307
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp222Asn
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

3-47894374-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894374
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894374
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 35082
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2395G>A
  hgvsp: ENSP00000409731.2:p.Gly799Arg
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*148G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1300G>A
  hgvsp: ENSP00000334770.5:p.Gly434Arg
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.658G>A
  hgvsp: ENSP00000415130.2:p.Gly220Arg
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*148G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*148G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*148G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*50G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3316G>A
  hgvsp: ENSP00000379083.3:p.Gly1106Arg
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6771
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6968
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35094
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6721
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7064
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34818
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly220Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

3-47894375-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894375
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894375
    reference: chr 3
allele count: 6
allele frequency: 1.592441212378576e-4
allele num: 37678
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2394C>T
  hgvsp: ENST00000420772.2:c.2394C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*147C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*147C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*147C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3315C>T
  hgvsp: ENST00000395734.3:c.3315C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1299C>T
  hgvsp: ENST00000335271.5:c.1299C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.657C>T
  hgvsp: ENST00000441748.2:c.657C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*147C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*49C>T
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7857
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5932
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6697
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35048
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
hgvs: p.His219His
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum

3-47894378-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894378
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894378
    reference: chr 3
allele count: 1
allele frequency: 2.446782481037436e-5
allele num: 40870
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*144C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.654C>T
  hgvsp: ENST00000441748.2:c.654C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2391C>T
  hgvsp: ENST00000420772.2:c.2391C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*144C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1296C>T
  hgvsp: ENST00000335271.5:c.1296C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*144C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*144C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3312C>T
  hgvsp: ENST00000395734.3:c.3312C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*46C>T
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6846
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8971
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34569
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4933
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34702
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1204
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp218Asp
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

3-47894380-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894380
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894380
    reference: chr 3
allele count: 155
allele frequency: 3.667770941788926e-3
allele num: 42260
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*142G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1294G>A
  hgvsp: ENSP00000334770.5:p.Asp432Asn
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3310G>A
  hgvsp: ENSP00000379083.3:p.Asp1104Asn
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*142G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*142G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.652G>A
  hgvsp: ENSP00000415130.2:p.Asp218Asn
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*142G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*44G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2389G>A
  hgvsp: ENSP00000409731.2:p.Asp797Asn
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9563
  bin: 2.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 33910
  bin: 7.5e0
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 7127
  bin: 1.25e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4470
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 1.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 8.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1248
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8486
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1484
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp218Asn
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ

3-47894381-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894381
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894381
    reference: chr 3
allele count: 1
allele frequency: 2.2129768965212e-5
allele num: 45188
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*141C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.651C>T
  hgvsp: ENST00000441748.2:c.651C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*141C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3309C>T
  hgvsp: ENST00000395734.3:c.3309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*141C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1293C>T
  hgvsp: ENST00000335271.5:c.1293C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2388C>T
  hgvsp: ENST00000420772.2:c.2388C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*141C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*43C>T
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33233
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7111
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4024
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1563
  bin: 3.75e1
  variant carriers: 1
hgvs: p.Thr217Thr
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

3-47894381-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894381
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894381
    reference: chr 3
allele count: 1
allele frequency: 2.2129768965212e-5
allele num: 45188
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*141C>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1293C>A
  hgvsp: ENST00000335271.5:c.1293C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*141C>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*43C>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2388C>A
  hgvsp: ENST00000420772.2:c.2388C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.651C>A
  hgvsp: ENST00000441748.2:c.651C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*141C>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3309C>A
  hgvsp: ENST00000395734.3:c.3309C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*141C>A
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3880
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10702
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33233
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1438
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1563
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr217Thr
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-47894385-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894385
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894385
    reference: chr 3
allele count: 1
allele frequency: 1.984126984126984e-5
allele num: 50400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*137G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*137G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*137G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1289G>A
  hgvsp: ENSP00000334770.5:p.Arg430His
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2384G>A
  hgvsp: ENSP00000409731.2:p.Arg795His
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3305G>A
  hgvsp: ENSP00000379083.3:p.Arg1102His
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.647G>A
  hgvsp: ENSP00000415130.2:p.Arg216His
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*39G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*137G>A
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12838
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2631
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2685
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg216His
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

3-47894386-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894386
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894386
    reference: chr 3
allele count: 1
allele frequency: 1.833449451798614e-5
allele num: 54542
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*38C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*136C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.646C>T
  hgvsp: ENSP00000415130.2:p.Arg216Cys
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3304C>T
  hgvsp: ENSP00000379083.3:p.Arg1102Cys
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1288C>T
  hgvsp: ENSP00000334770.5:p.Arg430Cys
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2383C>T
  hgvsp: ENSP00000409731.2:p.Arg795Cys
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*136C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*136C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*136C>T
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30027
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7243
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14308
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3200
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13160
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2705
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg216Cys
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum

3-47894386-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894386
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894386
    reference: chr 3
allele count: 8
allele frequency: 1.466759561438891e-4
allele num: 54542
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.646C>G
  hgvsp: ENSP00000415130.2:p.Arg216Gly
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*136C>G
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2383C>G
  hgvsp: ENSP00000409731.2:p.Arg795Gly
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*136C>G
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1288C>G
  hgvsp: ENSP00000334770.5:p.Arg430Gly
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3304C>G
  hgvsp: ENSP00000379083.3:p.Arg1102Gly
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*136C>G
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*136C>G
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*38C>G
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14308
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30027
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7243
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3200
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13160
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30876
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg216Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

3-47894390-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894390
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894390
    reference: chr 3
allele count: 1
allele frequency: 1.596474983237013e-5
allele num: 62638
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3300G>A
  hgvsp: ENST00000395734.3:c.3300G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2379G>A
  hgvsp: ENST00000420772.2:c.2379G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*34G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1284G>A
  hgvsp: ENST00000335271.5:c.1284G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*132G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*132G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.642G>A
  hgvsp: ENST00000441748.2:c.642G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*132G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*132G>A
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3013
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27031
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6764
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18240
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28031
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg214Arg
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

3-47894391-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894391
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894391
    reference: chr 3
allele count: 1
allele frequency: 1.563379400913014e-5
allele num: 63964
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*131G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*33G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1283G>A
  hgvsp: ENSP00000334770.5:p.Arg428Lys
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.641G>A
  hgvsp: ENSP00000415130.2:p.Arg214Lys
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*131G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*131G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3299G>A
  hgvsp: ENSP00000379083.3:p.Arg1100Lys
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2378G>A
  hgvsp: ENSP00000409731.2:p.Arg793Lys
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*131G>A
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6721
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18745
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26530
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1739
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg214Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/3-47894403-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894403
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894403
    reference: chr 3
allele count: 1
allele frequency: 1.254673659381195e-5
allele num: 79702
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*119G>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*119G>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*119G>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*21G>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2366G>T
  hgvsp: ENSP00000409731.2:p.Arg789Leu
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.629G>T
  hgvsp: ENSP00000415130.2:p.Arg210Leu
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1271G>T
  hgvsp: ENSP00000334770.5:p.Arg424Leu
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3287G>T
  hgvsp: ENSP00000379083.3:p.Arg1096Leu
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*119G>T
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4848
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5801
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25152
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 976
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2396
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg210Leu
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP

3-47894403-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894403
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894403
    reference: chr 3
allele count: 3
allele frequency: 3.764020978143585e-5
allele num: 79702
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*119G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*21G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*119G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2366G>A
  hgvsp: ENSP00000409731.2:p.Arg789Gln
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*119G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1271G>A
  hgvsp: ENSP00000334770.5:p.Arg424Gln
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.629G>A
  hgvsp: ENSP00000415130.2:p.Arg210Gln
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3287G>A
  hgvsp: ENSP00000379083.3:p.Arg1096Gln
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*119G>A
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5801
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25152
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4848
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2396
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg210Gln
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

3-47894404-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894404
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894404
    reference: chr 3
allele count: 20
allele frequency: 2.424418745605741e-4
allele num: 82494
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.628C>T
  hgvsp: ENSP00000415130.2:p.Arg210Trp
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*20C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1270C>T
  hgvsp: ENSP00000334770.5:p.Arg424Trp
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*118C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2365C>T
  hgvsp: ENSP00000409731.2:p.Arg789Trp
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*118C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3286C>T
  hgvsp: ENSP00000379083.3:p.Arg1096Trp
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*118C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*118C>T
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26060
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3575
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5608
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5366
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 17732
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3576
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg210Trp
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

3-47894408-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894408
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894408
    reference: chr 3
allele count: 7
allele frequency: 7.896933733444642e-5
allele num: 88642
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*114G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2361G>A
  hgvsp: ENST00000420772.2:c.2361G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*16G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.624G>A
  hgvsp: ENST00000441748.2:c.624G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*114G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3282G>A
  hgvsp: ENST00000395734.3:c.3282G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*114G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1266G>A
  hgvsp: ENST00000335271.5:c.1266G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*114G>A
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5060
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15245
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6075
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28521
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1325
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr208Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

3-47894409-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894409
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894409
    reference: chr 3
allele count: 3
allele frequency: 3.274608684262231e-5
allele num: 91614
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2360C>T
  hgvsp: ENSP00000409731.2:p.Thr787Met
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*15C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*113C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.623C>T
  hgvsp: ENSP00000415130.2:p.Thr208Met
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3281C>T
  hgvsp: ENSP00000379083.3:p.Thr1094Met
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1265C>T
  hgvsp: ENSP00000334770.5:p.Thr422Met
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*113C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*113C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*113C>T
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6328
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14036
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29891
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4753
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1770
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 813
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4402
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1320
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr208Met
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

3-47894417-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894417
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894417
    reference: chr 3
allele count: 1
allele frequency: 9.713453132588635e-6
allele num: 102950
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.615C>T
  hgvsp: ENST00000441748.2:c.615C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*105C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*105C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2352C>T
  hgvsp: ENST00000420772.2:c.2352C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3273C>T
  hgvsp: ENST00000395734.3:c.3273C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*105C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*7C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1257C>T
  hgvsp: ENST00000335271.5:c.1257C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*105C>T
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3234
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7619
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8659
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2891
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35622
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33258
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5313
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1437
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Tyr205Tyr
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

3-47894421-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894421
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894421
    reference: chr 3
allele count: 2
allele frequency: 1.866820990535218e-5
allele num: 107134
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.611C>T
  hgvsp: ENSP00000415130.2:p.Thr204Ile
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3269C>T
  hgvsp: ENSP00000379083.3:p.Thr1090Ile
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*101C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2348C>T
  hgvsp: ENSP00000409731.2:p.Thr783Ile
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*3C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1253C>T
  hgvsp: ENSP00000334770.5:p.Thr418Ile
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*101C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*101C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*101C>T
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8224
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37227
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3348
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6738
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr204Ile
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

3-47894423-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894423
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894423
    reference: chr 3
allele count: 1
allele frequency: 9.218798974869553e-6
allele num: 108474
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.609G>A
  hgvsp: ENST00000441748.2:c.609G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1251G>A
  hgvsp: ENST00000335271.5:c.1251G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*99G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2346G>A
  hgvsp: ENST00000420772.2:c.2346G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*99G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*99G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*99G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.*1G>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3267G>A
  hgvsp: ENST00000395734.3:c.3267G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6862
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5975
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37745
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8636
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1292
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1170
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu203Glu
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/3-47894439-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894439
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894439
    reference: chr 3
allele count: 1
allele frequency: 8.501377223110144e-6
allele num: 117628
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1246-11T>G
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.1476-11T>G
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*83T>G
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3262-11T>G
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.604-11T>G
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*83T>G
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*83T>G
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2341-11T>G
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*83T>G
  variant of: http://identifiers.org/hgnc/6862
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10522
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39762
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5473
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39069
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP

3-47894450-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894450
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894450
    reference: chr 3
allele count: 1
allele frequency: 8.34278849362611e-6
allele num: 119864
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1246-22C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*72C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*72C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2341-22C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.1476-22C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3262-22C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*72C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*72C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.604-22C>T
  variant of: http://identifiers.org/hgnc/6862
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39166
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6438
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11269
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7814
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39445
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

3-47894453-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894453
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894453
    reference: chr 3
allele count: 1
allele frequency: 8.314210648840998e-6
allele num: 120276
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*69C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.604-25C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.1476-25C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*69C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2341-25C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1246-25C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3262-25C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*69C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*69C>T
  variant of: http://identifiers.org/hgnc/6862
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39078
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6629
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

3-47894453-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894453
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894453
    reference: chr 3
allele count: 1
allele frequency: 8.314210648840998e-6
allele num: 120276
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3262-25C>G
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.604-25C>G
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*69C>G
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*69C>G
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1246-25C>G
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*69C>G
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2341-25C>G
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*69C>G
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.1476-25C>G
  variant of: http://identifiers.org/hgnc/6862
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39078
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6629
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3084
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-47894455-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894455
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894455
    reference: chr 3
allele count: 2
allele frequency: 1.660522732556209e-5
allele num: 120444
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.604-27C>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1246-27C>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.1476-27C>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*67C>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*67C>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2341-27C>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*67C>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*67C>A
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3262-27C>A
  variant of: http://identifiers.org/hgnc/6862
canonical: true
consequence: 3' UTR
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39053
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11395
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39629
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2343
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

3-47894455-GAGAGGGGAACAGGGGAGACA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894455
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894435
    reference: chr 3
allele count: 1
allele frequency: 8.302613662781043e-6
allele num: 120444
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  variant of: http://identifiers.org/hgnc/6862
canonical: true
consequence: 3' UTR
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39053
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11395
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3114
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3522
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: GAGAGGGGAACAGGGGAGACA
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

3-47894464-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894464
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894464
    reference: chr 3
allele count: 26
allele frequency: 2.151000215100022e-4
allele num: 120874
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*58T>C
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.1476-36T>C
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3262-36T>C
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2341-36T>C
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*58T>C
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*58T>C
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1246-36T>C
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*58T>C
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.604-36T>C
  variant of: http://identifiers.org/hgnc/6862
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38868
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6909
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3239
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 9.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

3-47894465-CAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894465
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894463
    reference: chr 3
allele count: 1
allele frequency: 8.273077750384698e-6
allele num: 120874
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*55_*56delCT
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1246-39_1246-38delCT
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.1476-39_1476-38delCT
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*55_*56delCT
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*55_*56delCT
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*55_*56delCT
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2341-39_2341-38delCT
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3262-39_3262-38delCT
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.604-39_604-38delCT
  variant of: http://identifiers.org/hgnc/6862
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38848
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11633
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39703
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
reference allele: CAG
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

3-47894467-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894467
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894467
    reference: chr 3
allele count: 1
allele frequency: 8.26541913940456e-6
allele num: 120986
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*55C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3262-39C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*55C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.1476-39C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.604-39C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*55C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*55C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1246-39C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2341-39C>T
  variant of: http://identifiers.org/hgnc/6862
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6976
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38834
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8090
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/3-47894474-CAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894474
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894472
    reference: chr 3
allele count: 5
allele frequency: 4.129432946267818e-5
allele num: 121082
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3262-48_3262-47delTT
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2341-48_2341-47delTT
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*46_*47delTT
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*46_*47delTT
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*46_*47delTT
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*46_*47delTT
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1246-48_1246-47delTT
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.604-48_604-47delTT
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.1476-48_1476-47delTT
  variant of: http://identifiers.org/hgnc/6862
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11685
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38813
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7025
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: CAA
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

3-47894475-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894475
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894475
    reference: chr 3
allele count: 1
allele frequency: 8.25695648583932e-6
allele num: 121110
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*47T>C
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000416743
  ensembl transcript: ENST00000429422
  gene symbol: MAP4
  hgvsc: ENST00000429422.1:c.1476-47T>C
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000353375
  ensembl transcript: ENST00000360240
  gene symbol: MAP4
  hgvsc: ENST00000360240.6:c.*47T>C
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3262-47T>C
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000407602
  ensembl transcript: ENST00000426837
  gene symbol: MAP4
  hgvsc: ENST00000426837.2:c.*47T>C
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000264724
  ensembl transcript: ENST00000264724
  gene symbol: MAP4
  hgvsc: ENST00000264724.11:c.*47T>C
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1246-47T>C
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000409731
  ensembl transcript: ENST00000420772
  gene symbol: MAP4
  hgvsc: ENST00000420772.2:c.2341-47T>C
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000415130
  ensembl transcript: ENST00000441748
  gene symbol: MAP4
  hgvsc: ENST00000441748.2:c.604-47T>C
  variant of: http://identifiers.org/hgnc/6862
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7025
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8130
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

3-47894480-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 47894480
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 47894480
    reference: chr 3
allele count: 1
allele frequency: 8.251642076773278e-6
allele num: 121188
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000379083
  ensembl transcript: ENST00000395734
  gene symbol: MAP4
  hgvsc: ENST00000395734.3:c.3262-52C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000373243
  ensembl transcript: ENST00000383737
  gene symbol: MAP4
  hgvsc: ENST00000383737.4:c.*42C>T
  variant of: http://identifiers.org/hgnc/6862
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000047849
  ensembl protein: ENSP00000334770
  ensembl transcript: ENST00000335271
  gene symbol: MAP4
  hgvsc: ENST00000335271.5:c.1246-52C>T
  variant of: http://identifiers.org/hgnc/6862
canonical: true
consequence: 3' UTR
filter: PASS
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 221
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11265
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1694
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3698
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.379748546708125e-5
allele num: 29588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4076
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.49e0

VQSLOD
type: SiteQuality
SIO_000300: -5.878e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.025e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.92e0

DP
type: SiteQuality
SIO_000300: 7.06438e5

MQRankSum
type: SiteQuality
SIO_000300: -8.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1351
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10612
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 1.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4010
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29008
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.371916508538899e-4
allele num: 4216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1648
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.796420581655481e-4
allele num: 3576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -4.581e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e0

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

FS
type: SiteQuality
SIO_000300: 3.982e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.55e-1

QD
type: SiteQuality
SIO_000300: 6.97e0

DP
type: SiteQuality
SIO_000300: 6.99377e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-2

GenotypeQuality
all individuals: 537
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1327
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4214
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.754194303550527e-5
allele num: 10252
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4008
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29074
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3576
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.579e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.747e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.082e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e0

MQRankSum
type: SiteQuality
SIO_000300: -7.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.72e-1

MQ
type: SiteQuality
SIO_000300: 5.923e1

DP
type: SiteQuality
SIO_000300: 6.99757e5

GenotypeQuality
all individuals: 316
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5448
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4172
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1640
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3956
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 374
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 3.944773175542406e-4
allele num: 10140
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.432e1

VQSLOD
type: SiteQuality
SIO_000300: 6.850000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.236e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.36e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.47e-1

DP
type: SiteQuality
SIO_000300: 6.86404e5

GenotypeQuality
all individuals: 28
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6183
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1263
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4078
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9904
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.601456815816858e-4
allele num: 3844
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27770
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e-1

QD
type: SiteQuality
SIO_000300: 1.255e1

DP
type: SiteQuality
SIO_000300: 6.69598e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.91e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.5e0

MQ
type: SiteQuality
SIO_000300: 5.923e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.08e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.08e-1

FS
type: SiteQuality
SIO_000300: 6.06e-1

GenotypeQuality
all individuals: 8
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.080302484695715e-4
allele num: 27770
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3380
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.452182442373713e-4
allele num: 4078
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.91e-1

DP
type: SiteQuality
SIO_000300: 6.69598e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.08e-1

MQ
type: SiteQuality
SIO_000300: 5.923e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-2

FS
type: SiteQuality
SIO_000300: 6.06e-1

QD
type: SiteQuality
SIO_000300: 1.255e1

VQSLOD
type: SiteQuality
SIO_000300: 2.5e0

GenotypeQuality
all individuals: 224
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.622663382118534e-5
allele num: 27604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4040
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9864
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.36e0

MQ
type: SiteQuality
SIO_000300: 5.866e1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

DP
type: SiteQuality
SIO_000300: 6.61952e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.059e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.52e-2

QD
type: SiteQuality
SIO_000300: 6.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.7e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.05e-1

GenotypeQuality
all individuals: 173
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 1

GenotypeQuality
all individuals: 573
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3734
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.520161290322581e-4
allele num: 3968
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9666
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.693034936110495e-5
allele num: 27078
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.148e0

FS
type: SiteQuality
SIO_000300: 3.39e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

DP
type: SiteQuality
SIO_000300: 6.48636e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.59e-2

QD
type: SiteQuality
SIO_000300: 7.85e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e0

MQ
type: SiteQuality
SIO_000300: 5.896e1

GenotypeQuality
all individuals: 8
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8072
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 193
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variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3286
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.699866804795027e-5
allele num: 27028
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 352
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3960
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.85e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.63e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.797e-1

QD
type: SiteQuality
SIO_000300: 1.706e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.62e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.132e0

DP
type: SiteQuality
SIO_000300: 6.48535e5

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8324
bin: 7.5e0
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3834
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26086
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1470
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3142
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQ
type: SiteQuality
SIO_000300: 5.662e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.83e-2

DP
type: SiteQuality
SIO_000300: 6.22102e5

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.627e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.22e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 435
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1328
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9986
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1970
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.93e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.325e1

DP
type: SiteQuality
SIO_000300: 4.00935e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.36e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1328
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.335357309668379e-4
allele num: 4282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9986
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1970
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.93e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.18e0

DP
type: SiteQuality
SIO_000300: 4.00935e5

ClippingRankSum
type: SiteQuality
SIO_000300: 5.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

QD
type: SiteQuality
SIO_000300: 1.325e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 785
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12522
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GenotypeQuality
all individuals: 399
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GenotypeQuality
all individuals: 389
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GenotypeQuality
all individuals: 791
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1632
bin: 2.25e1
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GenotypeQuality
all individuals: 51
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 278
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.661129568106312e-3
allele num: 602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3532
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.456e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

FS
type: SiteQuality
SIO_000300: 2.716e0

MQ
type: SiteQuality
SIO_000300: 5.863e1

MQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.17e-2

QD
type: SiteQuality
SIO_000300: 1.384e1

DP
type: SiteQuality
SIO_000300: 1.58722e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.79e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3672
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.508750754375377e-4
allele num: 6628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.2e-2

QD
type: SiteQuality
SIO_000300: 1.603e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.6e0

VQSLOD
type: SiteQuality
SIO_000300: -1.781e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.29e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.85e-1

FS
type: SiteQuality
SIO_000300: 7.51e-1

DP
type: SiteQuality
SIO_000300: 1.7219e5

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6826
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.148e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.05e-2

DP
type: SiteQuality
SIO_000300: 1.92046e5

FS
type: SiteQuality
SIO_000300: 9.321999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -1.432e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.775e0

MQRankSum
type: SiteQuality
SIO_000300: -2.87e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3926
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.496503496503497e-3
allele num: 286
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 7.462686567164179e-3
allele num: 134
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 4.332755632582322e-4
allele num: 6924
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.00486e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.33e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.142e0

VQSLOD
type: SiteQuality
SIO_000300: 4.6e0

MQRankSum
type: SiteQuality
SIO_000300: 5.19e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e-1

QD
type: SiteQuality
SIO_000300: 1.136e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 47
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 8

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 75
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GenotypeQuality
all individuals: 74
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3926
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 1.155401502021953e-3
allele num: 6924
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.136e1

VQSLOD
type: SiteQuality
SIO_000300: 4.6e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.33e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.19e-1

DP
type: SiteQuality
SIO_000300: 2.00486e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.142e0

GenotypeQuality
all individuals: 121
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 49
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GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4034
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 4.256526674233825e-4
allele num: 7048
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 138
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.09941e5

VQSLOD
type: SiteQuality
SIO_000300: -1.765e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.129999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.95e-2

QD
type: SiteQuality
SIO_000300: 1.14e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 706
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 142
num of homozygotes: 0

South Asian
type: Population
allele count: 21
allele frequency: 2.923976608187134e-3
allele num: 7182
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4254
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.23556e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.506e0

QD
type: SiteQuality
SIO_000300: 8.390000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.96e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.366e0

FS
type: SiteQuality
SIO_000300: 5.451e0

MQRankSum
type: SiteQuality
SIO_000300: 7.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 7.5e0
variant carriers: 27

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 8

GenotypeQuality
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bin: 7.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 68
allele frequency: 1.519213583556747e-2
allele num: 4476
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 6.756756756756757e-3
allele num: 148
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 310
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

South Asian
type: Population
allele count: 80
allele frequency: 1.096491228070175e-2
allele num: 7296
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.25e-2

FS
type: SiteQuality
SIO_000300: 5.44e-1

DP
type: SiteQuality
SIO_000300: 2.37188e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.51e-1

QD
type: SiteQuality
SIO_000300: 1.279e1

VQSLOD
type: SiteQuality
SIO_000300: 2.29e0

GenotypeQuality
all individuals: 67
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 577
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GenotypeQuality
all individuals: 40
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GenotypeQuality
all individuals: 83
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.171081198436822e-4
allele num: 4606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 328
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.49687e5

FS
type: SiteQuality
SIO_000300: 3.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.94e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 8.95e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

QD
type: SiteQuality
SIO_000300: 1.194e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 336
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4662
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.883e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.94e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.231e0

DP
type: SiteQuality
SIO_000300: 2.5306e5

QD
type: SiteQuality
SIO_000300: 6.59e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 8.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4730
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 340
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.136e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.58783e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 7.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4994
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.489e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.082e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.67e-2

DP
type: SiteQuality
SIO_000300: 2.79224e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 8

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.952362358453729e-4
allele num: 5122
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 9.433962264150943e-4
allele num: 7420
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.104e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 5.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.56e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

QD
type: SiteQuality
SIO_000300: 1.033e1

DP
type: SiteQuality
SIO_000300: 2.94651e5

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 298
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5252
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.342e1

MQRankSum
type: SiteQuality
SIO_000300: -4.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.340000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

FS
type: SiteQuality
SIO_000300: 9.03e-1

DP
type: SiteQuality
SIO_000300: 2.99429e5

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 322
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5612
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 2.450980392156863e-3
allele num: 408
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.344809037116729e-4
allele num: 7436
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.21112e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.859999999999999e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.022e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.27e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 5

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7448
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 124
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.41025641025641e-4
allele num: 6240
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.37e0

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -6.13e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.51612e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 470
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.349892008639309e-4
allele num: 7408
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 370
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1166
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 160
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

FS
type: SiteQuality
SIO_000300: 1.107e0

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.411e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 16428
bin: 2.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

East Asian
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
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BaseQRankSum
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ClippingRankSum
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QD
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InbreedingCoeff
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MQRankSum
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FS
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MQ
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VQSLOD
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ReadPosRankSum
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SIO_000300: 7.2e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 450
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
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BaseQRankSum
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InbreedingCoeff
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QD
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ClippingRankSum
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MQRankSum
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MQ
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ReadPosRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 1494
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.226692836113837e-4
allele num: 8152
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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ClippingRankSum
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DP
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MQRankSum
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VQSLOD
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FS
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BaseQRankSum
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MQ
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.63e-1

QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1538
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7588
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 404
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.57e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.82e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.106e0

QD
type: SiteQuality
SIO_000300: 9.76e0

DP
type: SiteQuality
SIO_000300: 4.34211e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7604
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.130198915009042e-4
allele num: 8848
num of homozygotes: 0

African
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allele count: 0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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QD
type: SiteQuality
SIO_000300: 1.051e1

VQSLOD
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.883e1

ReadPosRankSum
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BaseQRankSum
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SIO_000300: -2.604e0

DP
type: SiteQuality
SIO_000300: 4.38527e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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allele num: 212
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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African
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South Asian
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East Asian
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MQ
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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FS
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ClippingRankSum
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BaseQRankSum
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QD
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MQRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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Latino
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East Asian
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European (Finnish)
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European (Non-Finnish)
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South Asian
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BaseQRankSum
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MQ
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FS
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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MQRankSum
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DP
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QD
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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East Asian
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European (Non-Finnish)
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European (Finnish)
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African
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Other
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DP
type: SiteQuality
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VQSLOD
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FS
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ClippingRankSum
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BaseQRankSum
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MQ
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MQRankSum
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QD
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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African
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Latino
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European (Finnish)
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East Asian
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Other
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MQRankSum
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VQSLOD
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FS
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ClippingRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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QD
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SIO_000300: 1.16e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.5e-2

DP
type: SiteQuality
SIO_000300: 4.92882e5

GenotypeQuality
all individuals: 11240
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 975
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2297
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8140
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.825554705432288e-4
allele num: 2614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1100
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1000
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13868
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.91e0

VQSLOD
type: SiteQuality
SIO_000300: 7.74e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.4111e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

MQRankSum
type: SiteQuality
SIO_000300: 3.44e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.59e-2

QD
type: SiteQuality
SIO_000300: 1.231e1

GenotypeQuality
all individuals: 157
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
all individuals: 760
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variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2656
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14160
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1040
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.787346221441124e-4
allele num: 1138
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.232741617357002e-4
allele num: 8112
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.75e-1

DP
type: SiteQuality
SIO_000300: 5.48891e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.79e-1

QD
type: SiteQuality
SIO_000300: 1.439e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.59e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e0

GenotypeQuality
all individuals: 1397
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6448
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18074
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1718
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3264
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

DP
type: SiteQuality
SIO_000300: 6.09716e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.82e-2

QD
type: SiteQuality
SIO_000300: 1.017e1

GenotypeQuality
all individuals: 294
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 815
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variant carriers: 0

GenotypeQuality
all individuals: 561
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2516
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 9.75e1
variant carriers: 6

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.531237239689669e-4
allele num: 19592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3494
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.378378378378379e-4
allele num: 8880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1746
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1746
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 326
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1894
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.08e0

FS
type: SiteQuality
SIO_000300: 7.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.22e-1

DP
type: SiteQuality
SIO_000300: 6.32715e5

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.55e-2

QD
type: SiteQuality
SIO_000300: 1.287e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

GenotypeQuality
all individuals: 464
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
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variant carriers: 0

GenotypeQuality
all individuals: 604
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GenotypeQuality
all individuals: 108
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 47
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variant carriers: 0

GenotypeQuality
all individuals: 2545
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 2.645502645502646e-4
allele num: 3780
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9100
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2010
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1972
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2078
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21578
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.36e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

MQRankSum
type: SiteQuality
SIO_000300: 2.02e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.56e-1

QD
type: SiteQuality
SIO_000300: 1.026e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.58056e5

VQSLOD
type: SiteQuality
SIO_000300: 7.8e-2

GenotypeQuality
all individuals: 344
bin: 7.25e1
variant carriers: 5

GenotypeQuality
all individuals: 632
bin: 4.75e1
variant carriers: 4

GenotypeQuality
all individuals: 259
bin: 9.75e1
variant carriers: 152

GenotypeQuality
all individuals: 712
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GenotypeQuality
all individuals: 989
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 475
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variant carriers: 2

GenotypeQuality
all individuals: 2616
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2551
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GenotypeQuality
all individuals: 394
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variant carriers: 4

GenotypeQuality
all individuals: 577
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variant carriers: 0

GenotypeQuality
all individuals: 69
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variant carriers: 3

GenotypeQuality
all individuals: 34014
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variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 7.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2130
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 121
allele frequency: 5.383520199323723e-3
allele num: 22476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 23
allele frequency: 1.0677808727948e-2
allele num: 2154
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.552322613578356e-4
allele num: 3918
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 1.063829787234043e-2
allele num: 376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2058
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 6.558810668998689e-4
allele num: 9148
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.269e1

VQSLOD
type: SiteQuality
SIO_000300: 5.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.38e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

DP
type: SiteQuality
SIO_000300: 6.74455e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.54e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 598
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 183
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GenotypeQuality
all individuals: 55
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GenotypeQuality
all individuals: 9879
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GenotypeQuality
all individuals: 1438
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variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 70
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4216
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2294
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.112856790326561e-5
allele num: 24314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.97046e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.19e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.78e0

MQRankSum
type: SiteQuality
SIO_000300: -3.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.53e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.663e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.71e-1

GenotypeQuality
all individuals: 600
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9879
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4024
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GenotypeQuality
all individuals: 440
bin: 1.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
all individuals: 723
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
all individuals: 2605
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
all individuals: 70
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2643
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4216
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24314
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.065870816457045e-4
allele num: 9382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2294
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.663e1

VQSLOD
type: SiteQuality
SIO_000300: 2.78e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.19e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.26e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.97046e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.53e-1

GenotypeQuality
all individuals: 868
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 771
bin: 2.5e0
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GenotypeQuality
all individuals: 11344
bin: 6.25e1
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GenotypeQuality
all individuals: 786
bin: 4.75e1
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GenotypeQuality
all individuals: 3133
bin: 7.5e0
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GenotypeQuality
all individuals: 399
bin: 7.75e1
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GenotypeQuality
all individuals: 424
bin: 7.25e1
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GenotypeQuality
all individuals: 400
bin: 5.75e1
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GenotypeQuality
all individuals: 1619
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31629
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1682
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 428
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.152389151958674e-4
allele num: 4646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9674
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2784
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2642
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27574
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.89e-1

DP
type: SiteQuality
SIO_000300: 7.46884e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.36e-1

FS
type: SiteQuality
SIO_000300: 2.214e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.36e-1

QD
type: SiteQuality
SIO_000300: 1.253e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.15e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 571
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 5.75e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 482
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10138
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.998401278976818e-4
allele num: 5004
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2944
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29924
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3228
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 456
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.06e-2

DP
type: SiteQuality
SIO_000300: 7.73439e5

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.91e0

QD
type: SiteQuality
SIO_000300: 1.536e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e0

GenotypeQuality
all individuals: 777
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 9.75e1
variant carriers: 10

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 81
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 2.339259457291806e-4
allele num: 29924
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5004
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.097893432465923e-4
allele num: 3228
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2848
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2944
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10138
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.536e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.06e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e-1

DP
type: SiteQuality
SIO_000300: 7.73439e5

VQSLOD
type: SiteQuality
SIO_000300: 4.91e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e0

GenotypeQuality
all individuals: 16670
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 101
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variant carriers: 0

GenotypeQuality
all individuals: 2541
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3344
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4042
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.885836315364192e-5
allele num: 34652
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5726
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10762
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.07e0

DP
type: SiteQuality
SIO_000300: 8.39997e5

MQRankSum
type: SiteQuality
SIO_000300: -2.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

QD
type: SiteQuality
SIO_000300: 1.413e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.04e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 455
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 689
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2382
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 96
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variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.825976374837506e-5
allele num: 35386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3696
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4178
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5868
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.85e-1

QD
type: SiteQuality
SIO_000300: 1.545e1

DP
type: SiteQuality
SIO_000300: 8.50498e5

GenotypeQuality
all individuals: 1728
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1079
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 959
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 370
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 170
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variant carriers: 0

GenotypeQuality
all individuals: 165
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variant carriers: 1

GenotypeQuality
all individuals: 552
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.19000819000819e-5
allele num: 12210
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44176
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4278
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7246
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6252
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.423e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-1

FS
type: SiteQuality
SIO_000300: 9.699999999999999e0

QD
type: SiteQuality
SIO_000300: 1.238e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.53e-1

DP
type: SiteQuality
SIO_000300: 9.97006e5

GenotypeQuality
all individuals: 20429
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 647
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GenotypeQuality
all individuals: 960
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12210
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4278
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.760143527463428e-4
allele num: 7246
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.263672582397682e-5
allele num: 44176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6252
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.53e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.423e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 9.699999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-1

QD
type: SiteQuality
SIO_000300: 1.238e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.96e-1

DP
type: SiteQuality
SIO_000300: 9.97006e5

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 20

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1025
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GenotypeQuality
all individuals: 188
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.328727079457879e-4
allele num: 7526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5172
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 19
allele frequency: 4.163562256212473e-4
allele num: 45634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 670
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.952e1

DP
type: SiteQuality
SIO_000300: 1.02857e6

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.62e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.09e-1

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 6.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

FS
type: SiteQuality
SIO_000300: 2.531e0

QD
type: SiteQuality
SIO_000300: 1.514e1

GenotypeQuality
all individuals: 25631
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1630
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GenotypeQuality
all individuals: 268
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GenotypeQuality
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GenotypeQuality
all individuals: 989
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GenotypeQuality
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GenotypeQuality
all individuals: 728
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GenotypeQuality
all individuals: 1887
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8014
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.128953174797744e-5
allele num: 48948
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.412429378531073e-3
allele num: 708
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.302732575990175e-4
allele num: 13028
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7462
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.239e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.73e-1

DP
type: SiteQuality
SIO_000300: 1.081477e6

VQSLOD
type: SiteQuality
SIO_000300: 2.48e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.774e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.85e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1486
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variant carriers: 0

GenotypeQuality
all individuals: 27414
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7934
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.967309370784734e-5
allele num: 50412
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.20889748549323e-4
allele num: 8272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5972
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.96e-1

DP
type: SiteQuality
SIO_000300: 1.107536e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.28e-1

QD
type: SiteQuality
SIO_000300: 1.3e1

MQRankSum
type: SiteQuality
SIO_000300: -8.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.39e-1

MQ
type: SiteQuality
SIO_000300: 5.933e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.927126627874758e-5
allele num: 14436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7052
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9180
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.243e0

FS
type: SiteQuality
SIO_000300: 2.527e0

QD
type: SiteQuality
SIO_000300: 8.09e0

VQSLOD
type: SiteQuality
SIO_000300: -1.173e0

DP
type: SiteQuality
SIO_000300: 1.224178e6

MQRankSum
type: SiteQuality
SIO_000300: -4.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.330000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQ
type: SiteQuality
SIO_000300: 5.901e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7440
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.055743243243243e-4
allele num: 9472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10038
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5776
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.702011777921503e-5
allele num: 58754
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.6e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.872e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

VQSLOD
type: SiteQuality
SIO_000300: -5.583e-1

QD
type: SiteQuality
SIO_000300: 1.621e1

DP
type: SiteQuality
SIO_000300: 1.269555e6

GenotypeQuality
all individuals: 121
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2171
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GenotypeQuality
all individuals: 1943
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10226
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14920
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.681293923803759e-5
allele num: 59478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5878
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.92e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.418e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.356e0

DP
type: SiteQuality
SIO_000300: 1.28955e6

MQRankSum
type: SiteQuality
SIO_000300: -6.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

QD
type: SiteQuality
SIO_000300: 6.54e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1900
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GenotypeQuality
all individuals: 694
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11266
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.549618793776731e-5
allele num: 64532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15944
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.44e-1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -8.016e-1

MQ
type: SiteQuality
SIO_000300: 5.904e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.374e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.38e0

DP
type: SiteQuality
SIO_000300: 1.420625e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 145
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.72951936174353e-5
allele num: 10278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65838
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.25e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.79e0

MQRankSum
type: SiteQuality
SIO_000300: 9.91e-1

FS
type: SiteQuality
SIO_000300: 3.081e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.9e-1

DP
type: SiteQuality
SIO_000300: 1.466049e6

VQSLOD
type: SiteQuality
SIO_000300: 5.13e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16312
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513134003147319e-5
allele num: 66088
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 7.511e0

ReadPosRankSum
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.007e1

DP
type: SiteQuality
SIO_000300: 1.475287e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.88e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513134003147319e-5
allele num: 66088
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16312
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.977e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e0

QD
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 7.511e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.88e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 585
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 1.939864209505335e-4
allele num: 10310
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.1244e1

ReadPosRankSum
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ClippingRankSum
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MQRankSum
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DP
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VQSLOD
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BaseQRankSum
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QD
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MQ
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InbreedingCoeff
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SIO_000300: 5.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66186
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10310
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South Asian
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allele count: 1
allele frequency: 6.119951040391677e-5
allele num: 16340
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.695e1

FS
type: SiteQuality
SIO_000300: 1.1244e1

QD
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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SIO_000300: -5.98e-1

DP
type: SiteQuality
SIO_000300: 1.479137e6

VQSLOD
type: SiteQuality
SIO_000300: -1.943e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
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allele count: 26
allele frequency: 3.009259259259259e-3
allele num: 8640
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66426
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.955e1

FS
type: SiteQuality
SIO_000300: 1.315e0

DP
type: SiteQuality
SIO_000300: 1.492502e6

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.34e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.04e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66436
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.671179883945841e-5
allele num: 10340
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.49396e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

MQ
type: SiteQuality
SIO_000300: 5.903e1

FS
type: SiteQuality
SIO_000300: 1.546e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.53e0

QD
type: SiteQuality
SIO_000300: 1.837e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.659508139937652e-5
allele num: 11548
num of homozygotes: 0

South Asian
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Other
type: Population
allele count: 0
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allele num: 900
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66488
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.587e0

InbreedingCoeff
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SIO_000300: -3.0e-4

ClippingRankSum
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VQSLOD
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SIO_000300: 3.15e0

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.928e1

QD
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DP
type: SiteQuality
SIO_000300: 1.496111e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.072382803011902e-5
allele num: 16468
num of homozygotes: 0

Other
type: Population
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African
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allele count: 2
allele frequency: 1.930874686232864e-4
allele num: 10358
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.503036132988637e-5
allele num: 66532
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
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FS
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MQ
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ReadPosRankSum
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MQRankSum
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DP
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.502494140272853e-5
allele num: 66556
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East Asian
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South Asian
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QD
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BaseQRankSum
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MQ
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MQRankSum
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ClippingRankSum
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FS
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ReadPosRankSum
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DP
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InbreedingCoeff
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VQSLOD
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