1-201337359-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201337359
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201337359
    reference: chr 1
allele count: 1
allele frequency: 8.273077750384698e-6
allele num: 120874
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-4C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-4C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-4C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.53-4C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-4C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-4C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.98-4C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000445079
  gene symbol: TNNT2
  hgvsc: ENST00000445079.2:n.84C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-4C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.83-4C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-4C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.98-4C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-4C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.104-4C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-4C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-4C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-4C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-4C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-4C>T
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.68-4C>T
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

1-201337364-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201337364
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201337364
    reference: chr 1
allele count: 1
allele frequency: 8.280339162692104e-6
allele num: 120768
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-9C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.98-9C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.83-9C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-9C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-9C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.98-9C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-9C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-9C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000445079
  gene symbol: TNNT2
  hgvsc: ENST00000445079.2:n.79C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-9C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.53-9C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-9C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-9C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.83-9C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-9C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.104-9C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-9C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-9C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-9C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-9C>A
  variant of: http://identifiers.org/hgnc/11949
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD

1-201337369-GCAGA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201337369
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201337365
    reference: chr 1
allele count: 1
allele frequency: 8.294212298657997e-6
allele num: 120566
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-18_68-15delTCTG
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000445079
  gene symbol: TNNT2
  hgvsc: ENST00000445079.2:n.70_73delTCTG
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.104-18_104-15delTCTG
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-18_68-15delTCTG
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-18_68-15delTCTG
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-18_68-15delTCTG
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-18_53-15delTCTG
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-18_174-15delTCTG
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-18_68-15delTCTG
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-18_74-15delTCTG
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.83-18_83-15delTCTG
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-18_2285-15delTCTG
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-18_140-15delTCTG
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.53-18_53-15delTCTG
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.98-18_98-15delTCTG
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-18_68-15delTCTG
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.98-18_98-15delTCTG
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-18_327-15delTCTG
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-18_140-15delTCTG
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.83-18_83-15delTCTG
  variant of: http://identifiers.org/hgnc/11949
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: GCAGA
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-201337391-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201337391
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201337391
    reference: chr 1
allele count: 3
allele frequency: 2.512226167347759e-5
allele num: 119416
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-36G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-36G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-36G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.98-36G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.104-36G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-36G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-36G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.83-36G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.98-36G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000445079
  gene symbol: TNNT2
  hgvsc: ENST00000445079.2:n.52G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-36G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.53-36G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-36G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-36G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-36G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-36G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.83-36G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-36G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-36G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-36G>T
  variant of: http://identifiers.org/hgnc/11949
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4016
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD

1-201337391-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201337391
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201337391
    reference: chr 1
allele count: 1
allele frequency: 8.37408722449253e-6
allele num: 119416
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-36G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-36G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.83-36G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.98-36G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-36G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.98-36G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-36G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-36G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-36G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.53-36G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000445079
  gene symbol: TNNT2
  hgvsc: ENST00000445079.2:n.52G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-36G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-36G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-36G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-36G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-36G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-36G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.104-36G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.83-36G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-36G>A
  variant of: http://identifiers.org/hgnc/11949
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

1-201337399-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201337399
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201337399
    reference: chr 1
allele count: 1
allele frequency: 8.429855175088092e-6
allele num: 118626
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-44T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.98-44T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.53-44T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-44T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-44T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-44T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-44T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-44T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-44T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.98-44T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000445079
  gene symbol: TNNT2
  hgvsc: ENST00000445079.2:n.44T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-44T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.83-44T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.104-44T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-44T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-44T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-44T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-44T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-44T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.83-44T>C
  variant of: http://identifiers.org/hgnc/11949
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9648
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum

1-201337453-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201337453
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201337453
    reference: chr 1
allele count: 1
allele frequency: 2.449899554118281e-5
allele num: 40818
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.104-98C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-98C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.98-98C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.52+93C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-98C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-98C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-98C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-98C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-98C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-98C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-98C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.98-98C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-98C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-98C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-98C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.83-98C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.83-98C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-98C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-98C>T
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17500
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ

1-201337461-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201337461
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201337461
    reference: chr 1
allele count: 2
allele frequency: 6.328312871788382e-5
allele num: 31604
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-106G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.83-106G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.104-106G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.52+85G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-106G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-106G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-106G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.83-106G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-106G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-106G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.98-106G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-106G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-106G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-106G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-106G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-106G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-106G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-106G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.98-106G>A
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

1-201337462-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201337462
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201337462
    reference: chr 1
allele count: 15
allele frequency: 4.776765811094835e-4
allele num: 31402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.52+84C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-107C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-107C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.83-107C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-107C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.83-107C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-107C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-107C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-107C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-107C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.98-107C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-107C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-107C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.104-107C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-107C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-107C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-107C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-107C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.98-107C>T
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19154
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

1-201337468-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201337468
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201337468
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 27220
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.83-113C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-113C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.98-113C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-113C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.52+78C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-113C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-113C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-113C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-113C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-113C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-113C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-113C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.104-113C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-113C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.83-113C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-113C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.98-113C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-113C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-113C>T
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

1-201337469-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201337469
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201337469
    reference: chr 1
allele count: 1
allele frequency: 3.839950848629138e-5
allele num: 26042
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-114A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-114A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-114A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.104-114A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-114A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.83-114A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-114A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.98-114A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.52+77A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-114A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.83-114A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-114A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-114A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-114A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-114A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.98-114A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-114A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-114A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-114A>G
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26850
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

1-201337470-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201337470
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201337470
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 26008
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-115G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-115G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-115G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.83-115G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.104-115G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.98-115G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-115G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-115G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-115G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.98-115G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-115G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.52+76G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-115G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-115G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-115G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.83-115G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-115G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-115G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-115G>A
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-201337480-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201337480
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201337480
    reference: chr 1
allele count: 2
allele frequency: 9.157509157509158e-5
allele num: 21840
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-125A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-125A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.52+66A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.83-125A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-125A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-125A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-125A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.104-125A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-125A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-125A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.83-125A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-125A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-125A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-125A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.98-125A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-125A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-125A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.98-125A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-125A>G
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD

1-201337482-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201337482
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201337482
    reference: chr 1
allele count: 1
allele frequency: 4.729026766291497e-5
allele num: 21146
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.104-127C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-127C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-127C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-127C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-127C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-127C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.98-127C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-127C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.83-127C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-127C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-127C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-127C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.52+64C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-127C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.98-127C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-127C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-127C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-127C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.83-127C>T
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

1-201337486-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201337486
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201337486
    reference: chr 1
allele count: 1790
allele frequency: 9.054122407688417e-2
allele num: 19770
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-131C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-131C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-131C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-131C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-131C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-131C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-131C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-131C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-131C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.98-131C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.83-131C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.98-131C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.104-131C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-131C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-131C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.52+60C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.83-131C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-131C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-131C>T
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11576
  bin: 7.5e0
  variant carriers: 2075
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 1.75e1
  variant carriers: 176
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 5.25e1
  variant carriers: 48
genotype quality: GenotypeQuality
num of homozygotes: 80
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

1-201337494-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201337494
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201337494
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 16886
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.52+52G>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-139G>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-139G>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-139G>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-139G>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.98-139G>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-139G>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-139G>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-139G>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.83-139G>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-139G>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-139G>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-139G>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.104-139G>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.83-139G>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-139G>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-139G>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.98-139G>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-139G>C
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

1-201337494-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201337494
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201337494
    reference: chr 1
allele count: 2
allele frequency: 1.184413123297406e-4
allele num: 16886
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-139G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.83-139G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-139G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-139G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.83-139G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.52+52G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-139G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-139G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-139G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-139G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.104-139G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-139G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.98-139G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-139G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.98-139G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-139G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-139G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-139G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-139G>A
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

1-201337495-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201337495
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201337495
    reference: chr 1
allele count: 1
allele frequency: 6.063545961678389e-5
allele num: 16492
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-140C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.83-140C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.83-140C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-140C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-140C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-140C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-140C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-140C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-140C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.104-140C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.98-140C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-140C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-140C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-140C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.52+51C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-140C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-140C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-140C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.98-140C>T
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6779
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

1-201337505-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201337505
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201337505
    reference: chr 1
allele count: 1
allele frequency: 6.460783046905285e-5
allele num: 15478
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-150C>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.83-150C>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.52+41C>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-150C>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-150C>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-150C>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-150C>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-150C>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-150C>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.104-150C>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-150C>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-150C>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-150C>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.98-150C>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-150C>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-150C>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-150C>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.83-150C>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.98-150C>G
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

1-201337506-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201337506
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201337505
    reference: chr 1
allele count: 3
allele frequency: 1.912533469335713e-4
allele num: 15686
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-152delA
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.104-152delA
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-152delA
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-152delA
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.83-152delA
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-152delA
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-152delA
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-152delA
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-152delA
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-152delA
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-152delA
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-152delA
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.98-152delA
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.83-152delA
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-152delA
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-152delA
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-152delA
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.52+39delA
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.98-152delA
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
reference allele: CT
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum

1-201337519-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201337519
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201337519
    reference: chr 1
allele count: 2
allele frequency: 1.324327903588929e-4
allele num: 15102
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.98-164A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-164A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-164A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.83-164A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-164A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.52+27A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-164A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-164A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-164A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-164A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-164A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-164A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-164A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-164A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-164A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.98-164A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-164A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.104-164A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.83-164A>C
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

1-201337531-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201337531
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201337531
    reference: chr 1
allele count: 1
allele frequency: 6.959910913140311e-5
allele num: 14368
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.83-176C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-176C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-176C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.98-176C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.83-176C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-176C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-176C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-176C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-176C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-176C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-176C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-176C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-176C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.98-176C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-176C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.52+15C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-176C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-176C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.104-176C>T
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

1-201337540-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201337540
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201337540
    reference: chr 1
allele count: 1
allele frequency: 7.051191651389085e-5
allele num: 14182
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-185G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.104-185G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-185G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-185G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-185G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-185G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-185G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.52+6G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.83-185G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-185G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.98-185G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-185G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.83-185G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-185G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-185G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-185G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-185G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-185G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.98-185G>A
  variant of: http://identifiers.org/hgnc/11949
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.52+6G>A
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

1-201337567-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201337567
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201337567
    reference: chr 1
allele count: 4
allele frequency: 2.904865649963689e-4
allele num: 13770
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-212G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-212G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.83-212G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-212G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-212G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.98-212G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-212G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.83-212G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-212G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-212G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-212G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.42-11G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-212G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.104-212G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-212G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-212G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.98-212G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-212G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-212G>A
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11621
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

1-201337568-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201337568
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201337568
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 13752
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.98-213C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-213C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-213C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-213C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-213C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-213C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-213C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.98-213C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-213C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-213C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-213C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-213C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.42-12C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.83-213C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.104-213C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-213C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-213C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.83-213C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-213C>A
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11662
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

1-201338419-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201338419
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201338419
    reference: chr 1
allele count: 6
allele frequency: 3.022061045633122e-4
allele num: 19854
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-1064C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.97+525C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-1064C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-1064C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.97+525C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-1064C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-1064C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.82+525C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.42-863C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-1064C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-1064C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-1064C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-1064C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.82+525C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-1064C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-1064C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.103+525C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-1064C>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-1064C>A
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

1-201338422-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201338422
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201338422
    reference: chr 1
allele count: 1
allele frequency: 5.036261079774375e-5
allele num: 19856
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-1067G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.103+522G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-1067G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-1067G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.42-866G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-1067G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-1067G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-1067G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.82+522G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-1067G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-1067G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-1067G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.97+522G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.82+522G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-1067G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.97+522G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-1067G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-1067G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-1067G>A
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

1-201338437-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201338437
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201338437
    reference: chr 1
allele count: 23
allele frequency: 1.159157343009777e-3
allele num: 19842
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-1082C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.82+507C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.97+507C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.42-881C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-1082C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-1082C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-1082C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-1082C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-1082C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.82+507C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-1082C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-1082C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-1082C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.103+507C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-1082C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.97+507C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-1082C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-1082C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-1082C>T
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

1-201338449-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201338449
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201338449
    reference: chr 1
allele count: 1
allele frequency: 5.038291011688835e-5
allele num: 19848
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-1094A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.42-893A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-1094A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-1094A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.97+495A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-1094A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-1094A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-1094A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-1094A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-1094A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-1094A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.103+495A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.82+495A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-1094A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-1094A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-1094A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.97+495A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-1094A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.82+495A>C
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

1-201338453-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201338453
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201338453
    reference: chr 1
allele count: 1
allele frequency: 5.038291011688835e-5
allele num: 19848
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-1098C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-1098C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-1098C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-1098C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.82+491C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-1098C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-1098C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-1098C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-1098C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.82+491C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.97+491C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-1098C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.103+491C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.42-897C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-1098C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-1098C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-1098C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.97+491C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-1098C>T
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

1-201338456-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201338456
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201338456
    reference: chr 1
allele count: 2
allele frequency: 1.007455168245013e-4
allele num: 19852
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-1101T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-1101T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-1101T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.82+488T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.97+488T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-1101T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-1101T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-1101T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-1101T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.97+488T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-1101T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.42-900T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-1101T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-1101T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.103+488T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-1101T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-1101T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.82+488T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-1101T>C
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

1-201338487-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201338487
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201338487
    reference: chr 1
allele count: 8
allele frequency: 4.029820672980052e-4
allele num: 19852
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-1132G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-1132G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.97+457G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-1132G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-1132G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.103+457G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-1132G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.42-931G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-1132G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-1132G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-1132G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.82+457G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-1132G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-1132G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-1132G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.82+457G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-1132G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-1132G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.97+457G>A
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

1-201338516-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201338516
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201338516
    reference: chr 1
allele count: 1
allele frequency: 5.039306591413022e-5
allele num: 19844
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.103+428G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.82+428G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-1161G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-1161G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-1161G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-1161G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.42-960G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-1161G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-1161G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-1161G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-1161G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.97+428G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.82+428G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-1161G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-1161G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-1161G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-1161G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-1161G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.97+428G>A
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4817
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

1-201338893-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201338893
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201338893
    reference: chr 1
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-1538T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-1538T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-1538T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.82+51T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.97+51T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-1538T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-1538T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-1538T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-1538T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-1538T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.42-1337T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.103+51T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-1538T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-1538T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-1538T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.82+51T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.97+51T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-1538T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-1538T>C
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3057
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2690
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

1-201338896-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201338896
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201338896
    reference: chr 1
allele count: 72442
allele frequency: 5.969280970352181e-1
allele num: 121358
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-1541A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-1541A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-1541A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.82+48A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.42-1340A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-1541A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-1541A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-1541A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-1541A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-1541A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-1541A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.97+48A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-1541A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-1541A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.82+48A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.97+48A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.103+48A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-1541A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-1541A>G
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 6.75e1
  variant carriers: 2257
genotype quality: GenotypeQuality
num of homozygotes: 22283
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

1-201338896-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201338896
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201338896
    reference: chr 1
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.103+48A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-1541A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.42-1340A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-1541A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-1541A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-1541A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.82+48A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-1541A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-1541A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.82+48A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-1541A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.97+48A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-1541A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-1541A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.97+48A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-1541A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-1541A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-1541A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-1541A>C
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3485
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP

1-201338897-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201338897
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201338897
    reference: chr 1
allele count: 2
allele frequency: 1.647500741375333e-5
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.42-1341C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-1542C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.97+47C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-1542C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-1542C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-1542C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-1542C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-1542C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.103+47C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-1542C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-1542C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.82+47C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-1542C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.97+47C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.82+47C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-1542C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-1542C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-1542C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-1542C>T
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum

1-201338897-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201338897
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201338897
    reference: chr 1
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-1542C>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-1542C>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-1542C>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.82+47C>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-1542C>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-1542C>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-1542C>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-1542C>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.97+47C>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-1542C>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.103+47C>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-1542C>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.82+47C>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.42-1341C>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-1542C>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.97+47C>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-1542C>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-1542C>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-1542C>G
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/1-201338901-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201338901
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201338901
    reference: chr 1
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-1546G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-1546G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.82+43G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.97+43G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-1546G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-1546G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-1546G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-1546G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-1546G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.103+43G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.97+43G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.82+43G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-1546G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-1546G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-1546G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-1546G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-1546G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-1546G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.42-1345G>T
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10092
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

1-201338925-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201338925
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201338925
    reference: chr 1
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-1570C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-1570C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.42-1369C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-1570C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-1570C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-1570C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-1570C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-1570C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-1570C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-1570C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.103+19C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.97+19C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-1570C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.82+19C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-1570C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-1570C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-1570C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.97+19C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.82+19C>T
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6197
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-201338932-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201338932
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201338932
    reference: chr 1
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-1577T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.82+12T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-1577T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-1577T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.82+12T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-1577T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-1577T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.42-1376T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-1577T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.97+12T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-1577T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-1577T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-1577T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-1577T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.103+12T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-1577T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.97+12T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-1577T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-1577T>C
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7186
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

1-201338935-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201338935
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201338935
    reference: chr 1
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-1580G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-1580G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-1580G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-1580G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-1580G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-1580G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.82+9G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-1580G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.103+9G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-1580G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-1580G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-1580G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-1580G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.42-1379G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-1580G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-1580G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.97+9G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.82+9G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.97+9G>A
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6196
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-201338944-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201338944
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201338944
    reference: chr 1
allele count: 2
allele frequency: 1.647473599235572e-5
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.97G>T
  hgvsp: ENSP00000356289.2:p.Glu33Ter
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-1589G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-1589G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-1589G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-1589G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.103G>T
  hgvsp: ENSP00000387874.2:p.Glu35Ter
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-1589G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.97G>T
  hgvsp: ENSP00000402238.1:p.Glu33Ter
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.42-1388G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-1589G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.82G>T
  hgvsp: ENSP00000395163.1:p.Glu28Ter
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.82G>T
  hgvsp: ENSP00000236918.7:p.Glu28Ter
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-1589G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-1589G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  clinical significance: uncertain_significance
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-1589G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-1589G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-1589G>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-1589G>T
  variant of: http://identifiers.org/hgnc/11949
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Glu28Ter
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

1-201338944-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201338944
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201338944
    reference: chr 1
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.97G>A
  hgvsp: ENSP00000402238.1:p.Glu33Lys
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  clinical significance: uncertain_significance
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-1589G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-1589G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.82G>A
  hgvsp: ENSP00000395163.1:p.Glu28Lys
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-1589G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-1589G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-1589G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-1589G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-1589G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-1589G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-1589G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.82G>A
  hgvsp: ENSP00000236918.7:p.Glu28Lys
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.103G>A
  hgvsp: ENSP00000387874.2:p.Glu35Lys
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.97G>A
  hgvsp: ENSP00000356289.2:p.Glu33Lys
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-1589G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-1589G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-1589G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: uncertain_significance
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-1589G>A
  variant of: http://identifiers.org/hgnc/11949
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Glu28Lys
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum

1-201338945-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201338945
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201338945
    reference: chr 1
allele count: 6
allele frequency: 4.942339373970346e-5
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.96C>T
  hgvsp: ENST00000367320.2:c.96C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.81C>T
  hgvsp: ENST00000422165.1:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-1590C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.81C>T
  hgvsp: ENST00000236918.7:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-1590C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-1590C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.42-1389C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.96C>T
  hgvsp: ENST00000455702.1:c.96C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-1590C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-1590C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-1590C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-1590C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.102C>T
  hgvsp: ENST00000458432.2:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-1590C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-1590C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-1590C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-1590C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-1590C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-1590C>T
  variant of: http://identifiers.org/hgnc/11949
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.81C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP

1-201338947-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201338947
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201338947
    reference: chr 1
allele count: 13
allele frequency: 1.070875481893967e-4
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-1592G>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.42-1391G>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.100G>C
  hgvsp: ENSP00000387874.2:p.Asp34His
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-1592G>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-1592G>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.94G>C
  hgvsp: ENSP00000356289.2:p.Asp32His
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.79G>C
  hgvsp: ENSP00000395163.1:p.Asp27His
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.79G>C
  hgvsp: ENSP00000236918.7:p.Asp27His
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-1592G>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-1592G>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-1592G>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-1592G>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-1592G>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-1592G>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-1592G>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-1592G>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.94G>C
  hgvsp: ENSP00000402238.1:p.Asp32His
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-1592G>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-1592G>C
  variant of: http://identifiers.org/hgnc/11949
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7183
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10098
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp27His
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

1-201338951-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201338951
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201338951
    reference: chr 1
allele count: 20
allele frequency: 1.647527884409444e-4
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.75C>T
  hgvsp: ENST00000422165.1:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.42-1395C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-1596C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-1596C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.96C>T
  hgvsp: ENST00000458432.2:c.96C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-1596C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-1596C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-1596C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-1596C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-1596C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-1596C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-1596C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.90C>T
  hgvsp: ENST00000367320.2:c.90C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-1596C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.75C>T
  hgvsp: ENST00000236918.7:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-1596C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-1596C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-1596C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.90C>T
  hgvsp: ENST00000455702.1:c.90C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11949
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp25Asp
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

1-201338957-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201338957
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201338957
    reference: chr 1
allele count: 3
allele frequency: 2.471413978317461e-5
allele num: 121388
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.90A>G
  hgvsp: ENST00000458432.2:c.90A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-1602A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-1602A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-1602A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-1602A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-1602A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.84A>G
  hgvsp: ENST00000455702.1:c.84A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.69A>G
  hgvsp: ENST00000422165.1:c.69A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-1602A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-1602A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.84A>G
  hgvsp: ENST00000367320.2:c.84A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-1602A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-1602A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.42-1401A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.69A>G
  hgvsp: ENST00000236918.7:c.69A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-1602A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-1602A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-1602A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-1602A>G
  variant of: http://identifiers.org/hgnc/11949
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7181
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg23Arg
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

1-201338964-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201338964
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201338964
    reference: chr 1
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-1609A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-1609A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.42-1408A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.62A>C
  hgvsp: ENSP00000395163.1:p.Asp21Ala
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-1609A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-1609A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.62A>C
  hgvsp: ENSP00000236918.7:p.Asp21Ala
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-1609A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-1609A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-1609A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.77A>C
  hgvsp: ENSP00000402238.1:p.Asp26Ala
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.83A>C
  hgvsp: ENSP00000387874.2:p.Asp28Ala
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-1609A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-1609A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.77A>C
  hgvsp: ENSP00000356289.2:p.Asp26Ala
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-1609A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-1609A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-1609A>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-1609A>C
  variant of: http://identifiers.org/hgnc/11949
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10093
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp21Ala
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

1-201338966-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201338966
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201338966
    reference: chr 1
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-1611G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.60G>A
  hgvsp: ENST00000236918.7:c.60G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-1611G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.81G>A
  hgvsp: ENST00000458432.2:c.81G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.75G>A
  hgvsp: ENST00000455702.1:c.75G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-1611G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.75G>A
  hgvsp: ENST00000367320.2:c.75G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.60G>A
  hgvsp: ENST00000422165.1:c.60G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-1611G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-1611G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-1611G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-1611G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-1611G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-1611G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-1611G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-1611G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-1611G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.42-1410G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-1611G>A
  variant of: http://identifiers.org/hgnc/11949
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu20Glu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

1-201338970-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201338970
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201338970
    reference: chr 1
allele count: 2
allele frequency: 1.648206751054852e-5
allele num: 121344
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.56A>G
  hgvsp: ENSP00000395163.1:p.Glu19Gly
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-1615A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-1615A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-1615A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.56A>G
  hgvsp: ENSP00000236918.7:p.Glu19Gly
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-1615A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.71A>G
  hgvsp: ENSP00000402238.1:p.Glu24Gly
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.71A>G
  hgvsp: ENSP00000356289.2:p.Glu24Gly
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-1615A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-1615A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-1615A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.77A>G
  hgvsp: ENSP00000387874.2:p.Glu26Gly
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-1615A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.42-1414A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-1615A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-1615A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-1615A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-1615A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-1615A>G
  variant of: http://identifiers.org/hgnc/11949
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9419
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu19Gly
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD

1-201338975-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201338975
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201338974
    reference: chr 1
allele count: 475
allele frequency: 3.91391044972891e-3
allele num: 121362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.68-3delC
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-1621delC
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-1621delC
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-1621delC
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-1621delC
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-1621delC
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.53-3delC
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-1621delC
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-1621delC
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.52-2delC
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.68-3delC
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-1621delC
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.74-3delC
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-1621delC
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-1621delC
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-1621delC
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.42-1420delC
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-1621delC
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-1621delC
  variant of: http://identifiers.org/hgnc/11949
canonical: false
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8290
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 9.75e1
  variant carriers: 107
genotype quality: GenotypeQuality
hgvs: c.52-2delC
num of homozygotes: 13
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
reference allele: TG
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/1-201338977-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201338977
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201338977
    reference: chr 1
allele count: 1
allele frequency: 8.303303053954863e-6
allele num: 120434
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-1622T>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.53-4T>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-1622T>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-1622T>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.52-3T>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.74-4T>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-1622T>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-1622T>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-1622T>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-1622T>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.68-4T>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.68-4T>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-1622T>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-1622T>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-1622T>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-1622T>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.42-1421T>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-1622T>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-1622T>G
  variant of: http://identifiers.org/hgnc/11949
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8286
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.52-3T>G
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

1-201338978-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201338978
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201338978
    reference: chr 1
allele count: 475
allele frequency: 3.914103958601141e-3
allele num: 121356
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-1623C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.53-5C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.74-5C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.52-4C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-1623C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-1623C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-1623C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-1623C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-1623C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.68-5C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-1623C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-1623C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-1623C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-1623C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-1623C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-1623C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.68-5C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.42-1422C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-1623C>T
  variant of: http://identifiers.org/hgnc/11949
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6197
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.52-4C>T
num of homozygotes: 13
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

1-201338981-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201338981
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201338981
    reference: chr 1
allele count: 283
allele frequency: 2.332020370156731e-3
allele num: 121354
alternate allele: C
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.74-8A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-1626A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-1626A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-1626A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.52-7A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-1626A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-1626A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-1626A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.53-8A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.68-8A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-1626A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-1626A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.68-8A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-1626A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-1626A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-1626A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.42-1425A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-1626A>G
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-1626A>G
  variant of: http://identifiers.org/hgnc/11949
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.52-7A>G
num of homozygotes: 8
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD

1-201338993-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201338993
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201338993
    reference: chr 1
allele count: 4
allele frequency: 3.29663084327817e-5
allele num: 121336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-1638G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.68-20G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.52-19G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-1638G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.42-1437G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-1638G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-1638G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-1638G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-1638G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-1638G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-1638G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.74-20G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-1638G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.53-20G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-1638G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-1638G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-1638G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.68-20G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-1638G>A
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP

1-201338994-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201338994
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201338994
    reference: chr 1
allele count: 61
allele frequency: 5.027942170422512e-4
allele num: 121322
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-1639C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.68-21C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-1639C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-1639C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-1639C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-1639C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.42-1438C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.53-21C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.74-21C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-1639C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-1639C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-1639C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-1639C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.68-21C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-1639C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-1639C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-1639C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.52-20C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-1639C>T
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6231
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

1-201338998-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201338998
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201338998
    reference: chr 1
allele count: 23
allele frequency: 1.895937747296228e-4
allele num: 121312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-1643G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-1643G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.42-1442G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-1643G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.53-25G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-1643G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-1643G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-1643G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-1643G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-1643G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.74-25G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-1643G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-1643G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.68-25G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-1643G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-1643G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.68-25G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.52-24G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-1643G>A
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10061
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6235
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

1-201338999-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201338999
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201338999
    reference: chr 1
allele count: 4
allele frequency: 3.297228679295053e-5
allele num: 121314
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.68-26C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-1644C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-1644C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-1644C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-1644C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-1644C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-1644C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-1644C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-1644C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-1644C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-1644C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.52-25C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-1644C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.68-26C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-1644C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.74-26C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-1644C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.53-26C>T
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.42-1443C>T
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4432
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9469
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

1-201339011-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201339011
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201339011
    reference: chr 1
allele count: 60
allele frequency: 4.946984812756625e-4
allele num: 121286
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.52-37G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.68-38G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.74-38G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-1656G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-1656G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.68-38G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-1656G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-1656G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-1656G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-1656G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.53-38G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.42-1455G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-1656G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-1656G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-1656G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-1656G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-1656G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-1656G>A
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-1656G>A
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9628
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3063
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP

1-201339017-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 201339017
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 201339017
    reference: chr 1
allele count: 1
allele frequency: 8.246606521416436e-6
allele num: 121262
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000387874
  ensembl transcript: ENST00000458432
  gene symbol: TNNT2
  hgvsc: ENST00000458432.2:c.74-44T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356291
  ensembl transcript: ENST00000367322
  gene symbol: TNNT2
  hgvsc: ENST00000367322.1:c.68-1662T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000395163
  ensembl transcript: ENST00000422165
  gene symbol: TNNT2
  hgvsc: ENST00000422165.1:c.53-44T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000494095
  gene symbol: TNNT2
  hgvsc: ENST00000494095.1:n.2285-1662T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000491504
  gene symbol: TNNT2
  hgvsc: ENST00000491504.1:n.140-1662T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356289
  ensembl transcript: ENST00000367320
  gene symbol: TNNT2
  hgvsc: ENST00000367320.2:c.68-44T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000408731
  ensembl transcript: ENST00000412633
  gene symbol: TNNT2
  hgvsc: ENST00000412633.1:c.68-1662T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000353535
  ensembl transcript: ENST00000360372
  gene symbol: TNNT2
  hgvsc: ENST00000360372.4:c.42-1461T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000475686
  gene symbol: TNNT2
  hgvsc: ENST00000475686.1:n.174-1662T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000466570
  gene symbol: TNNT2
  hgvsc: ENST00000466570.1:n.327-1662T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356284
  ensembl transcript: ENST00000367315
  gene symbol: TNNT2
  hgvsc: ENST00000367315.2:c.68-1662T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000414036
  ensembl transcript: ENST00000438742
  gene symbol: TNNT2
  hgvsc: ENST00000438742.1:c.53-1662T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000402238
  ensembl transcript: ENST00000455702
  gene symbol: TNNT2
  hgvsc: ENST00000455702.1:c.68-44T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000404134
  ensembl transcript: ENST00000421663
  gene symbol: TNNT2
  hgvsc: ENST00000421663.2:c.74-1662T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl transcript: ENST00000472177
  gene symbol: TNNT2
  hgvsc: ENST00000472177.2:n.140-1662T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000422031
  ensembl transcript: ENST00000509001
  gene symbol: TNNT2
  hgvsc: ENST00000509001.1:c.68-1662T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000236918
  ensembl transcript: ENST00000236918
  gene symbol: TNNT2
  hgvsc: ENST00000236918.7:c.52-43T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356287
  ensembl transcript: ENST00000367318
  gene symbol: TNNT2
  hgvsc: ENST00000367318.5:c.68-1662T>C
  variant of: http://identifiers.org/hgnc/11949
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000118194
  ensembl protein: ENSP00000356286
  ensembl transcript: ENST00000367317
  gene symbol: TNNT2
  hgvsc: ENST00000367317.4:c.68-1662T>C
  variant of: http://identifiers.org/hgnc/11949
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9198
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: FS

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000118194
ensembl protein: ENSP00000236918
ensembl transcript: ENST00000236918
gene symbol: TNNT2
hgvsc: ENST00000236918.7:c.83-4C>T
variant of: http://identifiers.org/hgnc/11949

GenotypeDepth
all individuals: 467
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 289
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 222
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2026
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7579
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 217
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4016
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 245
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 206
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 626
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4246
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13378
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24703
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 258
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 297
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 334
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 937
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 260
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 395
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3379
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8123
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1265
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2759
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31469
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9002
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2275
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.090133982947625e-5
allele num: 16420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.91e-1

DP
type: SiteQuality
SIO_000300: 2.249242e6

FS
type: SiteQuality
SIO_000300: 7.523e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

QD
type: SiteQuality
SIO_000300: 1.513e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.876e0

GenotypeDepth
all individuals: 2011
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13233
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24494
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7564
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4209
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 395
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 293
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 260
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 258
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 216
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 334
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 303
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4016
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 905
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 465
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 289
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 206
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 930
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8049
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 937
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3362
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2742
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31247
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2260
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8995
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505479947007106e-5
allele num: 66424
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.72e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.72e-1

DP
type: SiteQuality
SIO_000300: 2.241407e6

MQ
type: SiteQuality
SIO_000300: 5.909e1

VQSLOD
type: SiteQuality
SIO_000300: 2.17e-1

FS
type: SiteQuality
SIO_000300: 1.066e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.9e-2

QD
type: SiteQuality
SIO_000300: 7.86e0

GenotypeDepth
all individuals: 396
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 12919
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4016
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 206
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7537
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24142
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1421
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 257
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 216
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4144
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 291
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 919
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 289
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 504
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 334
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 260
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 395
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1990
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7888
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1168
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3313
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2688
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2240
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30655
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 921
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8984
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66314
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.1020258725897e-5
allele num: 16388
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.227054e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

QD
type: SiteQuality
SIO_000300: 9.59e0

MQ
type: SiteQuality
SIO_000300: 5.75e1

MQRankSum
type: SiteQuality
SIO_000300: -5.21e-1

FS
type: SiteQuality
SIO_000300: 4.35e0

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.42e-1

GenotypeDepth
all individuals: 289
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9015
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 17042
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 216
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 334
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1890
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7855
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5616
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3566
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 260
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 790
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 289
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 77
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7257
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 257
bin: 6.25e1
variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Finnish)
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DP
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QD
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ReadPosRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
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FS
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MQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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South Asian
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European (Non-Finnish)
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Latino
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East Asian
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QD
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DP
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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FS
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MQ
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Non-Finnish)
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African
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South Asian
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InbreedingCoeff
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MQ
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VQSLOD
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BaseQRankSum
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FS
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DP
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ReadPosRankSum
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QD
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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East Asian
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African
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Other
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South Asian
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InbreedingCoeff
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QD
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MQRankSum
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VQSLOD
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DP
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FS
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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Latino
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African
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European (Non-Finnish)
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FS
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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African
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European (Non-Finnish)
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Latino
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South Asian
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VQSLOD
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MQ
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InbreedingCoeff
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FS
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QD
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DP
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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South Asian
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African
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Other
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East Asian
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European (Finnish)
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VQSLOD
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ClippingRankSum
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MQ
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QD
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FS
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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African
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East Asian
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European (Finnish)
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Latino
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South Asian
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ReadPosRankSum
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ClippingRankSum
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DP
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FS
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BaseQRankSum
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QD
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InbreedingCoeff
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VQSLOD
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MQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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European (Non-Finnish)
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East Asian
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Latino
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European (Finnish)
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South Asian
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QD
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InbreedingCoeff
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DP
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FS
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MQ
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MQRankSum
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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African
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Other
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South Asian
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DP
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
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FS
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VQSLOD
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QD
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European (Non-Finnish)
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South Asian
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1634
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 6.257822277847309e-4
allele num: 1598
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.01e0

DP
type: SiteQuality
SIO_000300: 5.28814e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.4e-1

QD
type: SiteQuality
SIO_000300: 5.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.28e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.209e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.45e-2

GenotypeDepth
all individuals: 56
bin: 9.25e1
variant carriers: 43

GenotypeDepth
all individuals: 655
bin: 2.75e1
variant carriers: 49

GenotypeDepth
all individuals: 2988
bin: 1.25e1
variant carriers: 623

GenotypeDepth
all individuals: 548
bin: 5.75e1
variant carriers: 57

GenotypeDepth
all individuals: 86
bin: 8.75e1
variant carriers: 64

GenotypeDepth
all individuals: 187
bin: 7.25e1
variant carriers: 73

GenotypeDepth
all individuals: 413
bin: 6.25e1
variant carriers: 65

GenotypeDepth
all individuals: 134
bin: 7.75e1
variant carriers: 60

GenotypeDepth
all individuals: 673
bin: 2.25e1
variant carriers: 94

GenotypeDepth
all individuals: 30071
bin: 2.5e0
variant carriers: 483

GenotypeDepth
all individuals: 584
bin: 3.25e1
variant carriers: 38

GenotypeDepth
all individuals: 99
bin: 8.25e1
variant carriers: 65

GenotypeDepth
all individuals: 269
bin: 6.75e1
variant carriers: 54

GenotypeDepth
all individuals: 670
bin: 3.75e1
variant carriers: 37

GenotypeDepth
all individuals: 750
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variant carriers: 32

GenotypeDepth
all individuals: 734
bin: 4.25e1
variant carriers: 39

GenotypeDepth
all individuals: 105
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variant carriers: 97

GenotypeQuality
all individuals: 560
bin: 2.75e1
variant carriers: 205

GenotypeQuality
all individuals: 28969
bin: 7.5e0
variant carriers: 164

GenotypeQuality
all individuals: 475
bin: 6.75e1
variant carriers: 113

GenotypeQuality
all individuals: 133
bin: 5.25e1
variant carriers: 95

GenotypeQuality
all individuals: 278
bin: 7.25e1
variant carriers: 79

GenotypeQuality
all individuals: 111
bin: 4.75e1
variant carriers: 61

GenotypeQuality
all individuals: 1178
bin: 6.25e1
variant carriers: 179

GenotypeQuality
all individuals: 1101
bin: 1.25e1
variant carriers: 140

GenotypeQuality
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bin: 2.5e0
variant carriers: 8

GenotypeQuality
all individuals: 4781
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variant carriers: 1862

GenotypeQuality
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bin: 2.25e1
variant carriers: 163

GenotypeQuality
all individuals: 1087
bin: 1.75e1
variant carriers: 179

GenotypeQuality
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bin: 3.25e1
variant carriers: 99

GenotypeQuality
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bin: 5.75e1
variant carriers: 184

GenotypeQuality
all individuals: 76
bin: 4.25e1
variant carriers: 28

GenotypeQuality
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bin: 3.75e1
variant carriers: 29

GenotypeQuality
all individuals: 378
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variant carriers: 87

GenotypeQuality
all individuals: 490
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variant carriers: 167

GenotypeQuality
all individuals: 431
bin: 8.75e1
variant carriers: 239

GenotypeQuality
all individuals: 527
bin: 9.25e1
variant carriers: 191

Other
type: Population
allele count: 23
allele frequency: 9.663865546218488e-2
allele num: 238
num of homozygotes: 1

Latino
type: Population
allele count: 36
allele frequency: 7.563025210084033e-2
allele num: 476
num of homozygotes: 1

African
type: Population
allele count: 191
allele frequency: 1.326388888888889e-1
allele num: 1440
num of homozygotes: 7

East Asian
type: Population
allele count: 23
allele frequency: 4.181818181818182e-2
allele num: 550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 151
allele frequency: 9.49685534591195e-2
allele num: 1590
num of homozygotes: 9

South Asian
type: Population
allele count: 419
allele frequency: 5.289068417066398e-2
allele num: 7922
num of homozygotes: 14

European (Non-Finnish)
type: Population
allele count: 947
allele frequency: 1.253640455387874e-1
allele num: 7554
num of homozygotes: 48

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.64e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.37e0

DP
type: SiteQuality
SIO_000300: 5.09201e5

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

QD
type: SiteQuality
SIO_000300: 1.477e1

GenotypeDepth
all individuals: 241
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 38
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 386
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variant carriers: 0

GenotypeDepth
all individuals: 32719
bin: 2.5e0
variant carriers: 2

GenotypeDepth
all individuals: 13
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variant carriers: 0

GenotypeDepth
all individuals: 722
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variant carriers: 0

GenotypeDepth
all individuals: 15
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variant carriers: 0

GenotypeDepth
all individuals: 7243
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variant carriers: 1

GenotypeDepth
all individuals: 23
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variant carriers: 0

GenotypeDepth
all individuals: 711
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variant carriers: 0

GenotypeDepth
all individuals: 789
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variant carriers: 0

GenotypeDepth
all individuals: 827
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variant carriers: 0

GenotypeDepth
all individuals: 1723
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variant carriers: 0

GenotypeDepth
all individuals: 83
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variant carriers: 0

GenotypeDepth
all individuals: 717
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variant carriers: 0

GenotypeDepth
all individuals: 125
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variant carriers: 0

GenotypeDepth
all individuals: 281
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variant carriers: 0

GenotypeQuality
all individuals: 2415
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 237
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variant carriers: 0

GenotypeQuality
all individuals: 64
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variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1065
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variant carriers: 1

GenotypeQuality
all individuals: 103
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variant carriers: 0

GenotypeQuality
all individuals: 323
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variant carriers: 0

GenotypeQuality
all individuals: 3313
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 31914
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1167
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variant carriers: 0

GenotypeQuality
all individuals: 955
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
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variant carriers: 0

GenotypeQuality
all individuals: 441
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variant carriers: 0

GenotypeQuality
all individuals: 390
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variant carriers: 0

GenotypeQuality
all individuals: 4872
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
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variant carriers: 0

GenotypeQuality
all individuals: 50
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7768
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1038
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.79e-1

FS
type: SiteQuality
SIO_000300: 4.686e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.55e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.7e-2

QD
type: SiteQuality
SIO_000300: 1.426e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.51e-1

DP
type: SiteQuality
SIO_000300: 4.41764e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.51e-1

GenotypeDepth
all individuals: 83
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 711
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 386
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 665
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 241
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 281
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variant carriers: 0

GenotypeDepth
all individuals: 827
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variant carriers: 0

GenotypeDepth
all individuals: 125
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variant carriers: 0

GenotypeDepth
all individuals: 23
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variant carriers: 0

GenotypeDepth
all individuals: 722
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 32719
bin: 2.5e0
variant carriers: 3

GenotypeDepth
all individuals: 561
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variant carriers: 0

GenotypeDepth
all individuals: 13
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variant carriers: 0

GenotypeDepth
all individuals: 717
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variant carriers: 0

GenotypeDepth
all individuals: 15
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variant carriers: 0

GenotypeDepth
all individuals: 639
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variant carriers: 0

GenotypeDepth
all individuals: 7243
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1065
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 374
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variant carriers: 0

GenotypeQuality
all individuals: 50
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variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31914
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 232
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variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1167
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variant carriers: 0

GenotypeQuality
all individuals: 2415
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4872
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
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variant carriers: 0

GenotypeQuality
all individuals: 955
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 441
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variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3313
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 218
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 354
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.633911368015414e-4
allele num: 1038
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7768
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.777461784571632e-4
allele num: 5626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1462
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.51e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.89e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.41764e5

FS
type: SiteQuality
SIO_000300: 4.686e0

VQSLOD
type: SiteQuality
SIO_000300: 6.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.51e-1

QD
type: SiteQuality
SIO_000300: 1.426e1

GenotypeDepth
all individuals: 561
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 790
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 657
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variant carriers: 0

GenotypeDepth
all individuals: 13
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GenotypeDepth
all individuals: 720
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variant carriers: 0

GenotypeDepth
all individuals: 1553
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variant carriers: 0

GenotypeDepth
all individuals: 722
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variant carriers: 0

GenotypeDepth
all individuals: 717
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GenotypeDepth
all individuals: 634
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GenotypeDepth
all individuals: 281
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GenotypeDepth
all individuals: 32399
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GenotypeDepth
all individuals: 125
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GenotypeDepth
all individuals: 23
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GenotypeDepth
all individuals: 83
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GenotypeDepth
all individuals: 241
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GenotypeDepth
all individuals: 827
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GenotypeQuality
all individuals: 3312
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
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GenotypeQuality
all individuals: 59
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GenotypeQuality
all individuals: 31260
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GenotypeQuality
all individuals: 1070
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variant carriers: 0

GenotypeQuality
all individuals: 1020
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variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
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GenotypeQuality
all individuals: 218
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
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variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 8.25e1
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GenotypeQuality
all individuals: 4300
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2663
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 389
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variant carriers: 0

GenotypeQuality
all individuals: 1156
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
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variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 984
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.870557426112982e-4
allele num: 5346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7750
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.35109e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.198e0

MQRankSum
type: SiteQuality
SIO_000300: 8.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.86e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.321e0

FS
type: SiteQuality
SIO_000300: 6.758e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.85e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.27e-1

QD
type: SiteQuality
SIO_000300: 1.41e1

GenotypeDepth
all individuals: 791
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 782
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 226
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GenotypeDepth
all individuals: 5187
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GenotypeDepth
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GenotypeDepth
all individuals: 721
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
all individuals: 241
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GenotypeDepth
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GenotypeDepth
all individuals: 13
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GenotypeDepth
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GenotypeDepth
all individuals: 14
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GenotypeDepth
all individuals: 562
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GenotypeQuality
all individuals: 80
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GenotypeQuality
all individuals: 368
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GenotypeQuality
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GenotypeQuality
all individuals: 444
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GenotypeQuality
all individuals: 31
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GenotypeQuality
all individuals: 624
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GenotypeQuality
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GenotypeQuality
all individuals: 29281
bin: 7.5e0
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GenotypeQuality
all individuals: 144
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GenotypeQuality
all individuals: 48
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GenotypeQuality
all individuals: 578
bin: 1.75e1
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GenotypeQuality
all individuals: 3341
bin: 2.5e0
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GenotypeQuality
all individuals: 1171
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 9.25e1
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GenotypeQuality
all individuals: 51
bin: 5.25e1
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GenotypeQuality
all individuals: 3358
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3312
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 7.25e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 276
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 6.839945280437756e-4
allele num: 1462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7668
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.9e-1

FS
type: SiteQuality
SIO_000300: 2.3209e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.001e0

MQRankSum
type: SiteQuality
SIO_000300: 5.86e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

DP
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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East Asian
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African
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MQ
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DP
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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FS
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QD
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MQRankSum
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European (Non-Finnish)
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Latino
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European (Finnish)
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East Asian
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MQRankSum
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DP
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MQ
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VQSLOD
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FS
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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GenotypeQuality
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Latino
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European (Non-Finnish)
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East Asian
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European (Finnish)
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South Asian
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African
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BaseQRankSum
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DP
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VQSLOD
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FS
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MQ
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QD
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ReadPosRankSum
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South Asian
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European (Non-Finnish)
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African
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DP
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African
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European (Finnish)
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VQSLOD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

DP
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FS
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ClippingRankSum
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MQRankSum
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MQ
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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SIO_000300: -7.27e-1

QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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Latino
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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MQRankSum
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QD
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MQ
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FS
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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DP
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VQSLOD
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SIO_000300: 1.9e0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.173158141717503e-4
allele num: 8524
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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BaseQRankSum
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SIO_000300: -2.042e0

InbreedingCoeff
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MQRankSum
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MQ
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ClippingRankSum
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DP
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FS
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ReadPosRankSum
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VQSLOD
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

African
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South Asian
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num of homozygotes: 0

Latino
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Other
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European (Finnish)
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European (Non-Finnish)
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BaseQRankSum
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QD
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VQSLOD
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ClippingRankSum
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MQRankSum
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FS
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ReadPosRankSum
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DP
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MQ
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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East Asian
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European (Non-Finnish)
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South Asian
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African
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European (Finnish)
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QD
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MQRankSum
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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FS
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MQ
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ClippingRankSum
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InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.173984503404555e-4
allele num: 8518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2156
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.982e1

VQSLOD
type: SiteQuality
SIO_000300: 6.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

FS
type: SiteQuality
SIO_000300: 3.512e0

DP
type: SiteQuality
SIO_000300: 6.79451e5

BaseQRankSum
type: SiteQuality
SIO_000300: -8.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.32e-2

QD
type: SiteQuality
SIO_000300: 1.34e1

GenotypeDepth
all individuals: 238
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 191
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2970
bin: 2.5e0
variant carriers: 0

GenotypeDepth
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bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 851
bin: 6.25e1
variant carriers: 0

GenotypeDepth
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bin: 1.25e1
variant carriers: 0

GenotypeDepth
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bin: 9.75e1
variant carriers: 2

GenotypeDepth
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bin: 1.75e1
variant carriers: 0

GenotypeDepth
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bin: 7.25e1
variant carriers: 0

GenotypeDepth
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bin: 2.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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bin: 4.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2156
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.527167045741723e-4
allele num: 7914
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.79421e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

QD
type: SiteQuality
SIO_000300: 1.118e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.15e-2

FS
type: SiteQuality
SIO_000300: 2.298e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.3e-2

GenotypeDepth
all individuals: 850
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 969
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 427
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 473
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 207
bin: 7.5e0
variant carriers: 2

GenotypeDepth
all individuals: 363
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 190
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variant carriers: 0

GenotypeDepth
all individuals: 191
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
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variant carriers: 1

GenotypeDepth
all individuals: 3634
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variant carriers: 0

GenotypeDepth
all individuals: 78
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variant carriers: 0

GenotypeDepth
all individuals: 870
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variant carriers: 0

GenotypeDepth
all individuals: 1009
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
all individuals: 1706
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variant carriers: 2

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.75e1
variant carriers: 7

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 175
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 3.700277520814061e-3
allele num: 2162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.952e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

DP
type: SiteQuality
SIO_000300: 6.80337e5

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

QD
type: SiteQuality
SIO_000300: 1.358e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.95e-2

FS
type: SiteQuality
SIO_000300: 1.841e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

GenotypeDepth
all individuals: 256
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 853
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variant carriers: 0

GenotypeDepth
all individuals: 1008
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variant carriers: 0

GenotypeDepth
all individuals: 22
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variant carriers: 0

GenotypeDepth
all individuals: 1705
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variant carriers: 0

GenotypeDepth
all individuals: 655
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variant carriers: 0

GenotypeDepth
all individuals: 18
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variant carriers: 0

GenotypeDepth
all individuals: 422
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GenotypeDepth
all individuals: 968
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variant carriers: 0

GenotypeDepth
all individuals: 80
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variant carriers: 0

GenotypeDepth
all individuals: 472
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variant carriers: 1

GenotypeDepth
all individuals: 978
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variant carriers: 0

GenotypeDepth
all individuals: 253
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 75
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variant carriers: 0

GenotypeQuality
all individuals: 1509
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GenotypeQuality
all individuals: 106
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variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 193
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variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2152
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.17426021606388e-4
allele num: 8516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.287e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.535e0

QD
type: SiteQuality
SIO_000300: 1.251e1

BaseQRankSum
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SIO_000300: 3.64e0

FS
type: SiteQuality
SIO_000300: 2.665e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.03e-1

DP
type: SiteQuality
SIO_000300: 6.82132e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.79e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 340
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2193
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1969
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 2
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 809
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 4
bin: 1.75e1
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GenotypeQuality
all individuals: 862
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variant carriers: 0

GenotypeQuality
all individuals: 432
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variant carriers: 0

GenotypeQuality
all individuals: 504
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.637e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.28e0

QD
type: SiteQuality
SIO_000300: 1.252e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 5.278286e6

FS
type: SiteQuality
SIO_000300: 3.646e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.366e0

VQSLOD
type: SiteQuality
SIO_000300: -4.771e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.29e-1

MQ
type: SiteQuality
SIO_000300: 5.906e1

GenotypeDepth
all individuals: 3420
bin: 8.25e1
variant carriers: 3238

GenotypeDepth
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bin: 4.75e1
variant carriers: 1014

GenotypeDepth
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bin: 3.25e1
variant carriers: 316

GenotypeDepth
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GenotypeDepth
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bin: 2.75e1
variant carriers: 224

GenotypeDepth
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variant carriers: 1623

GenotypeDepth
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variant carriers: 2725

GenotypeDepth
all individuals: 3546
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variant carriers: 3427

GenotypeDepth
all individuals: 2035
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variant carriers: 470

GenotypeDepth
all individuals: 22
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GenotypeDepth
all individuals: 2
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variant carriers: 2

GenotypeDepth
all individuals: 2154
bin: 4.25e1
variant carriers: 711

GenotypeDepth
all individuals: 2114
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variant carriers: 1300

GenotypeDepth
all individuals: 24793
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variant carriers: 24310

GenotypeDepth
all individuals: 2417
bin: 6.25e1
variant carriers: 1983

GenotypeDepth
all individuals: 3153
bin: 7.75e1
variant carriers: 2979

GenotypeDepth
all individuals: 3485
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variant carriers: 3371

GenotypeQuality
all individuals: 406
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variant carriers: 30

GenotypeQuality
all individuals: 2
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variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 8

GenotypeQuality
all individuals: 55393
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variant carriers: 49827

GenotypeQuality
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bin: 5.25e1
variant carriers: 22

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 6

GenotypeQuality
all individuals: 754
bin: 6.75e1
variant carriers: 33

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1225
bin: 6.25e1
variant carriers: 14

GenotypeQuality
all individuals: 4
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 6

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 7.75e1
variant carriers: 36

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 9

GenotypeQuality
all individuals: 449
bin: 8.75e1
variant carriers: 44

GenotypeQuality
all individuals: 782
bin: 9.25e1
variant carriers: 45

GenotypeQuality
all individuals: 768
bin: 8.25e1
variant carriers: 62

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 14

East Asian
type: Population
allele count: 4179
allele frequency: 4.837925445705024e-1
allele num: 8638
num of homozygotes: 1030

African
type: Population
allele count: 3472
allele frequency: 3.338461538461538e-1
allele num: 10400
num of homozygotes: 606

European (Non-Finnish)
type: Population
allele count: 41199
allele frequency: 6.174910071942447e-1
allele num: 66720
num of homozygotes: 12771

Other
type: Population
allele count: 584
allele frequency: 6.460176991150443e-1
allele num: 904
num of homozygotes: 203

South Asian
type: Population
allele count: 10349
allele frequency: 6.267562984496124e-1
allele num: 16512
num of homozygotes: 3251

European (Finnish)
type: Population
allele count: 4490
allele frequency: 6.790683605565638e-1
allele num: 6612
num of homozygotes: 1537

Latino
type: Population
allele count: 8169
allele frequency: 7.059281023159351e-1
allele num: 11572
num of homozygotes: 2885

MQ
type: SiteQuality
SIO_000300: 5.957e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.49e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.62e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.346472e6

MQRankSum
type: SiteQuality
SIO_000300: 1.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.82e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.51e-1

QD
type: SiteQuality
SIO_000300: 2.264e1

GenotypeDepth
all individuals: 1352
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeDepth
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bin: 9.25e1
variant carriers: 0

GenotypeDepth
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bin: 3.25e1
variant carriers: 0

GenotypeDepth
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bin: 4.25e1
variant carriers: 0

GenotypeDepth
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bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2214
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variant carriers: 0

GenotypeDepth
all individuals: 2035
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3420
bin: 8.25e1
variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 2125
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24793
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 55393
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variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.264e1

ReadPosRankSum
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SIO_000300: 4.51e-1

MQRankSum
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SIO_000300: 1.21e-1

FS
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SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.49e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.82e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.62e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

DP
type: SiteQuality
SIO_000300: 5.346472e6

GenotypeDepth
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bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 2
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variant carriers: 0

GenotypeDepth
all individuals: 961
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 959
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variant carriers: 0

GenotypeDepth
all individuals: 2409
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variant carriers: 1

GenotypeDepth
all individuals: 1596
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variant carriers: 0

GenotypeDepth
all individuals: 7157
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variant carriers: 0

GenotypeDepth
all individuals: 3103
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variant carriers: 0

GenotypeDepth
all individuals: 1245
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variant carriers: 0

GenotypeDepth
all individuals: 1174
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4436
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 9417
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 4490
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 4508
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 11
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 39
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4462
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997062878379188e-5
allele num: 66732
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

MQRankSum
type: SiteQuality
SIO_000300: -9.5e-2

MQ
type: SiteQuality
SIO_000300: 5.96e1

FS
type: SiteQuality
SIO_000300: 1.648e0

QD
type: SiteQuality
SIO_000300: 1.285e1

DP
type: SiteQuality
SIO_000300: 2.820889e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.504e0

GenotypeDepth
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 8286
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 3103
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variant carriers: 0

GenotypeDepth
all individuals: 25
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 7157
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variant carriers: 0

GenotypeDepth
all individuals: 10093
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variant carriers: 0

GenotypeDepth
all individuals: 9417
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variant carriers: 0

GenotypeDepth
all individuals: 2166
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variant carriers: 0

GenotypeDepth
all individuals: 2409
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2454
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.648e0

ReadPosRankSum
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SIO_000300: 4.01e-1

QD
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SIO_000300: 1.285e1

MQ
type: SiteQuality
SIO_000300: 5.96e1

BaseQRankSum
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SIO_000300: -1.504e0

ClippingRankSum
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SIO_000300: -1.4e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

MQRankSum
type: SiteQuality
SIO_000300: -9.5e-2

DP
type: SiteQuality
SIO_000300: 2.820889e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 10
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.52e0

MQRankSum
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SIO_000300: 6.62e-1

FS
type: SiteQuality
SIO_000300: 8.3e-1

ClippingRankSum
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BaseQRankSum
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MQ
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DP
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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DP
type: SiteQuality
SIO_000300: 2.820256e6

InbreedingCoeff
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QD
type: SiteQuality
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MQ
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MQRankSum
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VQSLOD
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FS
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 3101
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1244
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1592
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 960
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1227
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10091
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2157
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 740
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2407
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6196
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9417
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 672
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4510
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2418
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4479
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7771
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4153
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30402
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2449
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4470
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.133e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-2

MQ
type: SiteQuality
SIO_000300: 5.807e1

QD
type: SiteQuality
SIO_000300: 1.645e1

VQSLOD
type: SiteQuality
SIO_000300: -8.971e-1

DP
type: SiteQuality
SIO_000300: 2.820098e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

GenotypeDepth
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7185
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1226
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9417
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4431
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 740
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10092
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 958
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2408
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 3098
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1592
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 672
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1244
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8286
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30398
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4476
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2447
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4512
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7768
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4469
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2418
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4154
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.981e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.056e0

DP
type: SiteQuality
SIO_000300: 2.820042e6

MQRankSum
type: SiteQuality
SIO_000300: 8.61e-1

FS
type: SiteQuality
SIO_000300: 8.162000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.066e0

QD
type: SiteQuality
SIO_000300: 1.294e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.8e-2

Annotation
canonical: false
clinical significance: uncertain_significance
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000118194
ensembl transcript: ENST00000466570
gene symbol: TNNT2
hgvsc: ENST00000466570.1:n.327-1589G>T
variant of: http://identifiers.org/hgnc/11949

GenotypeDepth
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3097
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2408
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4431
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1244
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1217
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8285
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 9416
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 672
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10097
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6197
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 960
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7185
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1591
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 958
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2157
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 741
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4469
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2418
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4477
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2445
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4510
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30394
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7761
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997062878379188e-5
allele num: 66732
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.02e-1

DP
type: SiteQuality
SIO_000300: 2.820022e6

QD
type: SiteQuality
SIO_000300: 1.07e1

FS
type: SiteQuality
SIO_000300: 6.529e0

MQRankSum
type: SiteQuality
SIO_000300: -6.5e-2

MQ
type: SiteQuality
SIO_000300: 5.973e1

VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.51e0

Annotation
canonical: false
clinical significance: uncertain_significance
consequence: intron_variant
ensembl gene: ENSG00000118194
ensembl protein: ENSP00000353535
ensembl transcript: ENST00000360372
gene symbol: TNNT2
hgvsc: ENST00000360372.4:c.42-1388G>A
variant of: http://identifiers.org/hgnc/11949

GenotypeDepth
all individuals: 3097
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9416
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2157
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4431
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1217
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10097
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 741
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7185
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1591
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8285
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6197
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 958
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 672
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 960
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2408
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1244
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2418
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4469
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7761
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2445
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4477
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30394
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4510
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.28e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.51e0

DP
type: SiteQuality
SIO_000300: 2.820022e6

QD
type: SiteQuality
SIO_000300: 1.07e1

VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

FS
type: SiteQuality
SIO_000300: 6.529e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.02e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.5e-2

GenotypeDepth
all individuals: 9419
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 960
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 671
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1221
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 740
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8285
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2410
bin: 9.75e1
variant carriers: 5

GenotypeDepth
all individuals: 6196
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7185
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10096
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4429
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3096
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2158
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 958
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1591
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4479
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7773
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30392
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4467
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2445
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4511
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2419
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.422480620155039e-4
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.955e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.5e-1

QD
type: SiteQuality
SIO_000300: 1.075e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.819979e6

GenotypeDepth
all individuals: 2157
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 8284
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 7.267441860465116e-4
allele num: 16512
num of homozygotes: 0

Latino
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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East Asian
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Other
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European (Non-Finnish)
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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VQSLOD
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FS
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QD
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MQ
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InbreedingCoeff
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SIO_000300: 1.0e-4

DP
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
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Latino
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South Asian
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allele count: 1
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European (Non-Finnish)
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allele frequency: 2.69735659054127e-4
allele num: 66732
num of homozygotes: 0

Other
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European (Finnish)
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allele frequency: 0.0e0
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MQRankSum
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ClippingRankSum
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QD
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MQ
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DP
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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FS
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SIO_000300: 5.31e-1

ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.495594317568783e-5
allele num: 66732
num of homozygotes: 0

Latino
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allele count: 0
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num of homozygotes: 0

African
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allele count: 0
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Other
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South Asian
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allele count: 0
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European (Finnish)
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allele count: 0
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ClippingRankSum
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SIO_000300: -4.85e-1

FS
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DP
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InbreedingCoeff
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MQ
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MQRankSum
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BaseQRankSum
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VQSLOD
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SIO_000300: -7.164e-1

ReadPosRankSum
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QD
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SIO_000300: 1.315e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 10400
num of homozygotes: 0

Other
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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European (Non-Finnish)
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East Asian
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InbreedingCoeff
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FS
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ReadPosRankSum
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MQ
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MQRankSum
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DP
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
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East Asian
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allele count: 0
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African
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allele count: 0
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Other
type: Population
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Latino
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European (Non-Finnish)
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InbreedingCoeff
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FS
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DP
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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MQ
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.92e-1

QD
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SIO_000300: 1.151e1

ClippingRankSum
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SIO_000300: 1.0e-2

ReadPosRankSum
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MQ
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SIO_000300: 5.967e1

DP
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

VQSLOD
type: SiteQuality
SIO_000300: 8.7e-1

GenotypeDepth
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bin: 9.25e1
variant carriers: 32

GenotypeDepth
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variant carriers: 20

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 49

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 9416
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variant carriers: 3

GenotypeDepth
all individuals: 55
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 7158
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variant carriers: 1

GenotypeDepth
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variant carriers: 43

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 38

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 32

GenotypeDepth
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variant carriers: 23

GenotypeDepth
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variant carriers: 8

GenotypeDepth
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variant carriers: 43

GenotypeDepth
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variant carriers: 51

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 462

GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 409
allele frequency: 4.72613820198752e-2
allele num: 8654
num of homozygotes: 13

South Asian
type: Population
allele count: 20
allele frequency: 1.211387038158692e-3
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 9.071666162685213e-4
allele num: 6614
num of homozygotes: 0

Other
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allele count: 2
allele frequency: 2.212389380530973e-3
allele num: 904
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.728608470181504e-4
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 35
allele frequency: 5.246589716684155e-4
allele num: 66710
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

DP
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SIO_000300: 2.816841e6

ClippingRankSum
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SIO_000300: -3.67e-1

MQ
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SIO_000300: 5.983e1

ReadPosRankSum
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InbreedingCoeff
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SIO_000300: 5.25e-2

BaseQRankSum
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SIO_000300: -2.093e0

MQRankSum
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SIO_000300: 3.83e-1

FS
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SIO_000300: 0.0e0

QD
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SIO_000300: 1.786e1

VQSLOD
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SIO_000300: 5.07e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 67
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variant carriers: 0

GenotypeQuality
all individuals: 4127
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500645277469312e-5
allele num: 66638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7862
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.72e-1

FS
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SIO_000300: 1.817e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

DP
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SIO_000300: 2.816133e6

BaseQRankSum
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SIO_000300: -4.401e0

VQSLOD
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SIO_000300: 4.86e-1

ReadPosRankSum
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SIO_000300: 6.66e-1

MQRankSum
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SIO_000300: -7.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

QD
type: SiteQuality
SIO_000300: 1.11e1

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 10

GenotypeDepth
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variant carriers: 42

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 45

GenotypeDepth
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variant carriers: 3

GenotypeDepth
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variant carriers: 40

GenotypeDepth
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variant carriers: 30

GenotypeDepth
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GenotypeDepth
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variant carriers: 96

GenotypeDepth
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variant carriers: 56

GenotypeDepth
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variant carriers: 41

GenotypeDepth
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variant carriers: 37

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 29

GenotypeDepth
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variant carriers: 19

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 462

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4127
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728907330567082e-4
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 9.071666162685213e-4
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 20
allele frequency: 1.211387038158692e-3
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.212389380530973e-3
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 409
allele frequency: 4.727230698104484e-2
allele num: 8652
num of homozygotes: 13

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 35
allele frequency: 5.246747016849553e-4
allele num: 66708
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.72e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

ReadPosRankSum
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SIO_000300: 2.41e-1

InbreedingCoeff
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SIO_000300: 5.23e-2

MQRankSum
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DP
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SIO_000300: 2.815715e6

BaseQRankSum
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SIO_000300: -8.67e-1

FS
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SIO_000300: 6.16e-1

ClippingRankSum
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SIO_000300: -3.85e-1

QD
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SIO_000300: 1.812e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 20

GenotypeDepth
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variant carriers: 3

GenotypeDepth
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GenotypeDepth
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variant carriers: 11

GenotypeDepth
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variant carriers: 20

GenotypeDepth
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variant carriers: 19

GenotypeDepth
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variant carriers: 3

GenotypeDepth
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variant carriers: 5

GenotypeDepth
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variant carriers: 18

GenotypeDepth
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variant carriers: 20

GenotypeDepth
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variant carriers: 16

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 68

GenotypeDepth
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variant carriers: 19

GenotypeDepth
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variant carriers: 27

GenotypeDepth
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variant carriers: 6

GenotypeDepth
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variant carriers: 5

GenotypeDepth
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variant carriers: 15

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 275

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 34
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variant carriers: 0

GenotypeQuality
all individuals: 2448
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.996641880546894e-5
allele num: 66704
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 13
allele frequency: 1.123789764868603e-3
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 263
allele frequency: 2.528846153846154e-2
allele num: 10400
num of homozygotes: 8

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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DP
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MQRankSum
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MQ
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SIO_000300: 5.965e1

FS
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SIO_000300: 1.389e0

QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 4.49829064955317e-5
allele num: 66692
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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num of homozygotes: 0

Other
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South Asian
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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MQ
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MQRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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QD
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DP
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SIO_000300: 2.782389e6

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele num: 904
num of homozygotes: 0

Latino
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East Asian
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num of homozygotes: 0

South Asian
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allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 39
allele frequency: 3.750721292556261e-3
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
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allele count: 20
allele frequency: 2.999220202747286e-4
allele num: 66684
num of homozygotes: 0

ClippingRankSum
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DP
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VQSLOD
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MQRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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FS
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SIO_000300: 7.09e-1

ReadPosRankSum
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SIO_000300: 4.92e-1

MQ
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SIO_000300: 5.958e1

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 23
allele frequency: 3.449517067610535e-4
allele num: 66676
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
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SIO_000300: 1.299e1

BaseQRankSum
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MQRankSum
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SIO_000300: -1.19e-1

ReadPosRankSum
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MQ
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ClippingRankSum
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FS
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VQSLOD
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DP
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InbreedingCoeff
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SIO_000300: -3.0e-4

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66678
num of homozygotes: 0

East Asian
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allele num: 8654
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African
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Latino
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ReadPosRankSum
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SIO_000300: 8.02e-1

MQRankSum
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InbreedingCoeff
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FS
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MQ
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ClippingRankSum
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DP
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BaseQRankSum
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VQSLOD
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 6
allele frequency: 5.770340450086555e-4
allele num: 10398
num of homozygotes: 0

South Asian
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East Asian
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allele count: 46
allele frequency: 5.3166897827092e-3
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500105007350515e-5
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European (Finnish)
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Latino
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Other
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BaseQRankSum
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QD
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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VQSLOD
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FS
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MQ
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4318
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2328
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29977
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 552
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4145
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0