1-227330633-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227330633
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227330633
    reference: chr 1
allele count: 1
allele frequency: 8.537230863797019e-6
allele num: 117134
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1223+13A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1223+13A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1223+13A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1223+13A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1223+13A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1223+13A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1223+13A>G
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3334
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12546
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2654
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1441
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1438
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1054
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

1-227330636-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227330636
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227330636
    reference: chr 1
allele count: 1
allele frequency: 8.500221005746149e-6
allele num: 117644
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1223+10A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1223+10A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1223+10A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1223+10A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1223+10A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1223+10A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1223+10A>G
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12769
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34430
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1510
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4983
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

1-227330666-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227330666
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227330666
    reference: chr 1
allele count: 1
allele frequency: 8.30137304710199e-6
allele num: 120462
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1203T>C
  hgvsp: ENST00000366764.2:c.1203T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1203T>C
  hgvsp: ENST00000334218.5:c.1203T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1203T>C
  hgvsp: ENST00000366765.3:c.1203T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1203T>C
  hgvsp: ENST00000366766.2:c.1203T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1203T>C
  hgvsp: ENST00000535525.1:c.1203T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1203T>C
  hgvsp: ENST00000366769.3:c.1203T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1203T>C
  hgvsp: ENST00000366767.3:c.1203T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37009
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14384
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45565
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1575
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5353
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly401Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum

1-227330681-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227330681
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227330681
    reference: chr 1
allele count: 1
allele frequency: 8.2917364554485e-6
allele num: 120602
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1188T>A
  hgvsp: ENSP00000443275.1:p.His396Gln
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1188T>A
  hgvsp: ENSP00000355729.3:p.His396Gln
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1188T>A
  hgvsp: ENSP00000335341.5:p.His396Gln
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1188T>A
  hgvsp: ENSP00000355727.3:p.His396Gln
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1188T>A
  hgvsp: ENSP00000355731.3:p.His396Gln
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1188T>A
  hgvsp: ENSP00000355728.2:p.His396Gln
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1188T>A
  hgvsp: ENSP00000355726.2:p.His396Gln
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36837
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5360
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 2.25e1
  variant carriers: 0
hgvs: p.His396Gln
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP

1-227330690-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227330690
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227330690
    reference: chr 1
allele count: 1
allele frequency: 8.30137304710199e-6
allele num: 120462
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1179T>C
  hgvsp: ENST00000366769.3:c.1179T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1179T>C
  hgvsp: ENST00000366765.3:c.1179T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1179T>C
  hgvsp: ENST00000535525.1:c.1179T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1179T>C
  hgvsp: ENST00000366767.3:c.1179T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1179T>C
  hgvsp: ENST00000366764.2:c.1179T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1179T>C
  hgvsp: ENST00000334218.5:c.1179T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1179T>C
  hgvsp: ENST00000366766.2:c.1179T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3783
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36445
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14705
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1508
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser393Ser
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum

1-227330706-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227330706
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227330706
    reference: chr 1
allele count: 2
allele frequency: 1.667917604870319e-5
allele num: 119910
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1163C>T
  hgvsp: ENSP00000335341.5:p.Thr388Ile
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1163C>T
  hgvsp: ENSP00000355728.2:p.Thr388Ile
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1163C>T
  hgvsp: ENSP00000443275.1:p.Thr388Ile
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1163C>T
  hgvsp: ENSP00000355729.3:p.Thr388Ile
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1163C>T
  hgvsp: ENSP00000355726.2:p.Thr388Ile
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1163C>T
  hgvsp: ENSP00000355727.3:p.Thr388Ile
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1163C>T
  hgvsp: ENSP00000355731.3:p.Thr388Ile
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35521
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14434
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1473
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43934
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr388Ile
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP

1-227330714-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227330714
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227330714
    reference: chr 1
allele count: 1
allele frequency: 8.370442294170824e-6
allele num: 119468
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1155C>T
  hgvsp: ENST00000366767.3:c.1155C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1155C>T
  hgvsp: ENST00000366769.3:c.1155C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1155C>T
  hgvsp: ENST00000366765.3:c.1155C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1155C>T
  hgvsp: ENST00000334218.5:c.1155C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1155C>T
  hgvsp: ENST00000366766.2:c.1155C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1155C>T
  hgvsp: ENST00000366764.2:c.1155C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1155C>T
  hgvsp: ENST00000535525.1:c.1155C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3613
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14297
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3478
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 42711
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1426
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2008
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro385Pro
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

1-227330721-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227330721
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227330721
    reference: chr 1
allele count: 2
allele frequency: 1.682991686021071e-5
allele num: 118836
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1148C>T
  hgvsp: ENSP00000335341.5:p.Thr383Met
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1148C>T
  hgvsp: ENSP00000443275.1:p.Thr383Met
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1148C>T
  hgvsp: ENSP00000355727.3:p.Thr383Met
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1148C>T
  hgvsp: ENSP00000355728.2:p.Thr383Met
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1148C>T
  hgvsp: ENSP00000355731.3:p.Thr383Met
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1148C>T
  hgvsp: ENSP00000355729.3:p.Thr383Met
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1148C>T
  hgvsp: ENSP00000355726.2:p.Thr383Met
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3454
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32396
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13735
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1359
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1423
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3099
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 813
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1369
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr383Met
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

1-227330732-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227330732
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227330732
    reference: chr 1
allele count: 3
allele frequency: 2.537899296155929e-5
allele num: 118208
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1144-7C>T
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1144-7C>T
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1144-7C>T
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1144-7C>T
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1144-7C>T
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1144-7C>T
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1144-7C>T
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3316
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3110
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29310
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6476
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12568
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1298
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1717
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1785
  bin: 2.75e1
  variant carriers: 0
hgvs: c.1144-7C>T
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD

1-227330752-GAAAT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227330752
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227330748
    reference: chr 1
allele count: 4
allele frequency: 3.447443720481263e-5
allele num: 116028
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1144-31_1144-28delATTT
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1144-31_1144-28delATTT
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1144-31_1144-28delATTT
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1144-31_1144-28delATTT
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1144-31_1144-28delATTT
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1144-31_1144-28delATTT
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1144-31_1144-28delATTT
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8895
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20673
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13425
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15897
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3191
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5367
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2971
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3443
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: GAAAT
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

1-227330756-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227330756
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227330756
    reference: chr 1
allele count: 3
allele frequency: 2.607335303320007e-5
allele num: 115060
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1144-31A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1144-31A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1144-31A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1144-31A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1144-31A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1144-31A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1144-31A>G
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13534
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20071
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8905
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8585
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6245
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5942
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4622
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2203
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1354
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD

1-227330759-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227330759
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227330759
    reference: chr 1
allele count: 85074
allele frequency: 7.444216937050454e-1
allele num: 114282
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1144-34T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1144-34T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1144-34T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1144-34T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1144-34T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1144-34T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1144-34T>C
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.25e1
  variant carriers: 257
genotype depth: GenotypeDepth
  all individuals: 4324
  bin: 3.25e1
  variant carriers: 4144
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 7.5e0
  variant carriers: 2102
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 5.25e1
  variant carriers: 583
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 187
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 157
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 3.75e1
  variant carriers: 2046
genotype depth: GenotypeDepth
  all individuals: 14169
  bin: 1.75e1
  variant carriers: 13277
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.75e1
  variant carriers: 346
genotype depth: GenotypeDepth
  all individuals: 9376
  bin: 1.25e1
  variant carriers: 8063
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.75e1
  variant carriers: 535
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 9.75e1
  variant carriers: 958
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 4.75e1
  variant carriers: 855
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.25e1
  variant carriers: 439
genotype depth: GenotypeDepth
  all individuals: 8634
  bin: 2.75e1
  variant carriers: 8119
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 4.25e1
  variant carriers: 1243
genotype depth: GenotypeDepth
  all individuals: 13367
  bin: 2.25e1
  variant carriers: 12529
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 111
genotype quality: GenotypeQuality
  all individuals: 1404
  bin: 7.25e1
  variant carriers: 1364
genotype quality: GenotypeQuality
  all individuals: 2920
  bin: 6.75e1
  variant carriers: 2778
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 1.25e1
  variant carriers: 170
genotype quality: GenotypeQuality
  all individuals: 3108
  bin: 4.75e1
  variant carriers: 3015
genotype quality: GenotypeQuality
  all individuals: 2698
  bin: 3.75e1
  variant carriers: 2367
genotype quality: GenotypeQuality
  all individuals: 4118
  bin: 6.25e1
  variant carriers: 3079
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 2.5e0
  variant carriers: 106
genotype quality: GenotypeQuality
  all individuals: 2140
  bin: 3.25e1
  variant carriers: 1627
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 1.75e1
  variant carriers: 433
genotype quality: GenotypeQuality
  all individuals: 1745
  bin: 5.75e1
  variant carriers: 1709
num of homozygotes: 31600
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

1-227330760-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227330760
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227330760
    reference: chr 1
allele count: 2
allele frequency: 1.85041264201917e-5
allele num: 108084
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1144-35A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1144-35A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1144-35A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1144-35A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1144-35A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1144-35A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1144-35A>G
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7373
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5666
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11856
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19275
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8651
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1580
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5000
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8073
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14043
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

1-227330766-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227330766
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227330765
    reference: chr 1
allele count: 2
allele frequency: 1.887255364523374e-5
allele num: 105974
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1144-42delT
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1144-42delT
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1144-42delT
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1144-42delT
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1144-42delT
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1144-42delT
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1144-42delT
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5547
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5851
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16352
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18850
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6515
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2240
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2092
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8875
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2444
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5318
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: TA
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

1-227330767-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227330767
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227330767
    reference: chr 1
allele count: 1
allele frequency: 9.418501704748809e-6
allele num: 106174
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1144-42T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1144-42T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1144-42T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1144-42T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1144-42T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1144-42T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1144-42T>C
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5563
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16313
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18868
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6533
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5844
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2086
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1417
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6889
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9141
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2434
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2490
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

1-227330772-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227330772
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227330772
    reference: chr 1
allele count: 1
allele frequency: 9.69142502713599e-6
allele num: 103184
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1144-47G>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1144-47G>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1144-47G>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1144-47G>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1144-47G>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1144-47G>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1144-47G>C
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7489
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7596
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16096
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4073
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5129
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1417
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1511
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4141
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12004
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5334
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

1-227330773-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227330773
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227330773
    reference: chr 1
allele count: 1
allele frequency: 9.733686341691325e-6
allele num: 102736
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1144-48A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1144-48A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1144-48A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1144-48A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1144-48A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1144-48A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1144-48A>G
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16023
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18014
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7723
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3787
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1961
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1713
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1603
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2667
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2752
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5359
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

1-227333141-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333141
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333141
    reference: chr 1
allele count: 13574
allele frequency: 1.171991020549128e-1
allele num: 115820
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1143+49A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1143+49A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1143+49A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1143+49A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1143+49A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1143+49A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1143+49A>G
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 4.75e1
  variant carriers: 1217
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 8.75e1
  variant carriers: 260
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 4.25e1
  variant carriers: 1140
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 6.75e1
  variant carriers: 765
genotype depth: GenotypeDepth
  all individuals: 9556
  bin: 2.25e1
  variant carriers: 327
genotype depth: GenotypeDepth
  all individuals: 2686
  bin: 3.75e1
  variant carriers: 931
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 2.5e0
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 1.25e1
  variant carriers: 416
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 7.25e1
  variant carriers: 565
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 8.25e1
  variant carriers: 340
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 7.5e0
  variant carriers: 286
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 5.25e1
  variant carriers: 1219
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 6.25e1
  variant carriers: 971
genotype depth: GenotypeDepth
  all individuals: 21677
  bin: 2.75e1
  variant carriers: 547
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 5.75e1
  variant carriers: 1122
genotype depth: GenotypeDepth
  all individuals: 8899
  bin: 3.25e1
  variant carriers: 743
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 171
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 9.75e1
  variant carriers: 1008
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 1.75e1
  variant carriers: 335
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.75e1
  variant carriers: 437
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 4.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 1901
  bin: 7.75e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 5.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 3.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 1.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 6513
  bin: 6.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 4.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 1.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 28918
  bin: 6.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 3.25e1
  variant carriers: 23
num of homozygotes: 1072
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP

1-227333147-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333147
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333147
    reference: chr 1
allele count: 20
allele frequency: 1.723187207058175e-4
allele num: 116064
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1143+43T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1143+43T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1143+43T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1143+43T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1143+43T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1143+43T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1143+43T>C
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10140
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26369
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2285
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11677
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2144
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36256
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1940
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 798
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

http://identifiers.org/exac.variant/1-227333154-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333154
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333155
    reference: chr 1
allele count: 3
allele frequency: 2.581044806937848e-5
allele num: 116232
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1143+35dupT
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1143+35dupT
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1143+35dupT
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1143+35dupT
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1143+35dupT
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1143+35dupT
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1143+35dupT
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26437
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12187
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8129
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2140
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3674
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 36854
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

1-227333158-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333158
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333158
    reference: chr 1
allele count: 1
allele frequency: 8.58236495648741e-6
allele num: 116518
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1143+32C>T
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1143+32C>T
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1143+32C>T
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1143+32C>T
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1143+32C>T
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1143+32C>T
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1143+32C>T
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10168
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12549
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26497
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8134
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2290
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37333
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2167
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1088
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

1-227333160-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333160
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333160
    reference: chr 1
allele count: 2
allele frequency: 1.714824659178599e-5
allele num: 116630
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1143+30C>T
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1143+30C>T
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1143+30C>T
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1143+30C>T
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1143+30C>T
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1143+30C>T
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1143+30C>T
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10164
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12646
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26541
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3659
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2151
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37469
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2290
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

1-227333164-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333164
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333164
    reference: chr 1
allele count: 1
allele frequency: 8.550224015869215e-6
allele num: 116956
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1143+26C>T
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1143+26C>T
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1143+26C>T
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1143+26C>T
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1143+26C>T
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1143+26C>T
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1143+26C>T
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8161
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2141
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2096
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

1-227333165-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333165
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333165
    reference: chr 1
allele count: 1
allele frequency: 8.542335816305611e-6
allele num: 117064
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1143+25T>A
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1143+25T>A
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1143+25T>A
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1143+25T>A
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1143+25T>A
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1143+25T>A
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1143+25T>A
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26607
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13171
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8166
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2144
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38017
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

1-227333175-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333175
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333175
    reference: chr 1
allele count: 2336
allele frequency: 1.98120568578892e-2
allele num: 117908
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1143+15G>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1143+15G>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1143+15G>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1143+15G>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1143+15G>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1143+15G>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1143+15G>C
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 26742
  bin: 2.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 10085
  bin: 3.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.75e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 13835
  bin: 2.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 3.75e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.75e1
  variant carriers: 121
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 1.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 1.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.25e1
  variant carriers: 133
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 9.75e1
  variant carriers: 564
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.75e1
  variant carriers: 136
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.25e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.25e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.75e1
  variant carriers: 120
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 7.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 156
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.75e1
  variant carriers: 116
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 8168
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1676
  bin: 2.25e1
  variant carriers: 3
num of homozygotes: 233
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD

1-227333178-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333178
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333178
    reference: chr 1
allele count: 2
allele frequency: 1.689731501664385e-5
allele num: 118362
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1143+12A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1143+12A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1143+12A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1143+12A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1143+12A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1143+12A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1143+12A>G
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10407
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40481
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2319
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8507
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

1-227333179-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333179
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333179
    reference: chr 1
allele count: 1
allele frequency: 8.440100605999223e-6
allele num: 118482
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1143+11C>A
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1143+11C>A
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1143+11C>A
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1143+11C>A
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1143+11C>A
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1143+11C>A
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1143+11C>A
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27737
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14658
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10417
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8513
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2207
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2319
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

1-227333180-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333180
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333180
    reference: chr 1
allele count: 1
allele frequency: 8.430423713095819e-6
allele num: 118618
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1143+10A>T
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1143+10A>T
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1143+10A>T
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1143+10A>T
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1143+10A>T
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1143+10A>T
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1143+10A>T
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14791
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27755
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10410
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2323
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8524
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

1-227333195-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333195
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333195
    reference: chr 1
allele count: 47
allele frequency: 3.909109055825404e-4
allele num: 120232
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1138A>T
  hgvsp: ENSP00000355728.2:p.Asn380Tyr
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1138A>T
  hgvsp: ENSP00000355729.3:p.Asn380Tyr
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1138A>T
  hgvsp: ENSP00000355727.3:p.Asn380Tyr
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1138A>T
  hgvsp: ENSP00000355726.2:p.Asn380Tyr
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1138A>T
  hgvsp: ENSP00000335341.5:p.Asn380Tyr
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1138A>T
  hgvsp: ENSP00000355731.3:p.Asn380Tyr
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1138A>T
  hgvsp: ENSP00000443275.1:p.Asn380Tyr
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15913
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10452
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28102
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42189
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2281
  bin: 9.75e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn380Tyr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum

1-227333210-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333210
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333210
    reference: chr 1
allele count: 1
allele frequency: 8.266922390132602e-6
allele num: 120964
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1123G>A
  hgvsp: ENSP00000355728.2:p.Asp375Asn
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1123G>A
  hgvsp: ENSP00000355729.3:p.Asp375Asn
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1123G>A
  hgvsp: ENSP00000335341.5:p.Asp375Asn
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1123G>A
  hgvsp: ENSP00000443275.1:p.Asp375Asn
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1123G>A
  hgvsp: ENSP00000355726.2:p.Asp375Asn
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1123G>A
  hgvsp: ENSP00000355731.3:p.Asp375Asn
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1123G>A
  hgvsp: ENSP00000355727.3:p.Asp375Asn
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28436
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16182
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10506
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2331
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8690
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp375Asn
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

1-227333217-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333217
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333217
    reference: chr 1
allele count: 25
allele frequency: 2.063830138524279e-4
allele num: 121134
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1116T>C
  hgvsp: ENST00000366767.3:c.1116T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1116T>C
  hgvsp: ENST00000366764.2:c.1116T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1116T>C
  hgvsp: ENST00000366769.3:c.1116T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1116T>C
  hgvsp: ENST00000535525.1:c.1116T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1116T>C
  hgvsp: ENST00000366765.3:c.1116T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1116T>C
  hgvsp: ENST00000366766.2:c.1116T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1116T>C
  hgvsp: ENST00000334218.5:c.1116T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16254
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2240
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2238
  bin: 9.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8721
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asp372Asp
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

1-227333226-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333226
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333226
    reference: chr 1
allele count: 1
allele frequency: 8.251642076773278e-6
allele num: 121188
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1107G>A
  hgvsp: ENST00000366767.3:c.1107G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1107G>A
  hgvsp: ENST00000366764.2:c.1107G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1107G>A
  hgvsp: ENST00000366765.3:c.1107G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1107G>A
  hgvsp: ENST00000334218.5:c.1107G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1107G>A
  hgvsp: ENST00000366769.3:c.1107G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1107G>A
  hgvsp: ENST00000535525.1:c.1107G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1107G>A
  hgvsp: ENST00000366766.2:c.1107G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16254
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28541
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43048
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8722
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2245
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser369Ser
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP

1-227333245-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333245
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333245
    reference: chr 1
allele count: 1
allele frequency: 8.24715060946443e-6
allele num: 121254
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1088G>C
  hgvsp: ENSP00000355728.2:p.Ser363Thr
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1088G>C
  hgvsp: ENSP00000355731.3:p.Ser363Thr
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1088G>C
  hgvsp: ENSP00000355726.2:p.Ser363Thr
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1088G>C
  hgvsp: ENSP00000335341.5:p.Ser363Thr
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1088G>C
  hgvsp: ENSP00000355727.3:p.Ser363Thr
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1088G>C
  hgvsp: ENSP00000355729.3:p.Ser363Thr
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1088G>C
  hgvsp: ENSP00000443275.1:p.Ser363Thr
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28569
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10533
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16268
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2333
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8725
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2213
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2245
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser363Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ

1-227333258-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333258
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333258
    reference: chr 1
allele count: 22
allele frequency: 1.814014083345702e-4
allele num: 121278
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1075A>G
  hgvsp: ENSP00000355726.2:p.Ile359Val
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1075A>G
  hgvsp: ENSP00000355728.2:p.Ile359Val
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1075A>G
  hgvsp: ENSP00000443275.1:p.Ile359Val
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1075A>G
  hgvsp: ENSP00000355731.3:p.Ile359Val
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1075A>G
  hgvsp: ENSP00000335341.5:p.Ile359Val
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1075A>G
  hgvsp: ENSP00000355727.3:p.Ile359Val
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1075A>G
  hgvsp: ENSP00000355729.3:p.Ile359Val
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16251
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10533
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28577
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8723
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43103
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ile359Val
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum

1-227333277-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333277
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333277
    reference: chr 1
allele count: 1
allele frequency: 8.244974687927709e-6
allele num: 121286
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1056G>A
  hgvsp: ENST00000334218.5:c.1056G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1056G>A
  hgvsp: ENST00000366766.2:c.1056G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1056G>A
  hgvsp: ENST00000366765.3:c.1056G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1056G>A
  hgvsp: ENST00000366769.3:c.1056G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1056G>A
  hgvsp: ENST00000366767.3:c.1056G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1056G>A
  hgvsp: ENST00000366764.2:c.1056G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1056G>A
  hgvsp: ENST00000535525.1:c.1056G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10537
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2243
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43143
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg352Arg
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ

1-227333278-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333278
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333278
    reference: chr 1
allele count: 2
allele frequency: 1.648967746190884e-5
allele num: 121288
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1055G>A
  hgvsp: ENSP00000335341.5:p.Arg352Gln
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1055G>A
  hgvsp: ENSP00000355729.3:p.Arg352Gln
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1055G>A
  hgvsp: ENSP00000355731.3:p.Arg352Gln
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1055G>A
  hgvsp: ENSP00000443275.1:p.Arg352Gln
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1055G>A
  hgvsp: ENSP00000355727.3:p.Arg352Gln
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1055G>A
  hgvsp: ENSP00000355728.2:p.Arg352Gln
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1055G>A
  hgvsp: ENSP00000355726.2:p.Arg352Gln
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16276
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10539
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2189
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg352Gln
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS

1-227333285-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333285
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333285
    reference: chr 1
allele count: 1
allele frequency: 8.244159013339049e-6
allele num: 121298
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1048A>G
  hgvsp: ENSP00000355726.2:p.Asn350Asp
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1048A>G
  hgvsp: ENSP00000355728.2:p.Asn350Asp
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1048A>G
  hgvsp: ENSP00000443275.1:p.Asn350Asp
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1048A>G
  hgvsp: ENSP00000355731.3:p.Asn350Asp
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1048A>G
  hgvsp: ENSP00000335341.5:p.Asn350Asp
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1048A>G
  hgvsp: ENSP00000355729.3:p.Asn350Asp
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1048A>G
  hgvsp: ENSP00000355727.3:p.Asn350Asp
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16303
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10538
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2336
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2187
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Asn350Asp
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

1-227333288-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333288
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333288
    reference: chr 1
allele count: 1
allele frequency: 8.244566830458728e-6
allele num: 121292
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1045G>A
  hgvsp: ENSP00000443275.1:p.Asp349Asn
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1045G>A
  hgvsp: ENSP00000355729.3:p.Asp349Asn
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1045G>A
  hgvsp: ENSP00000355727.3:p.Asp349Asn
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1045G>A
  hgvsp: ENSP00000355726.2:p.Asp349Asn
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1045G>A
  hgvsp: ENSP00000335341.5:p.Asp349Asn
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1045G>A
  hgvsp: ENSP00000355728.2:p.Asp349Asn
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1045G>A
  hgvsp: ENSP00000355731.3:p.Asp349Asn
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28611
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16312
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10538
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp349Asn
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

1-227333293-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333293
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333293
    reference: chr 1
allele count: 1
allele frequency: 8.243751236562685e-6
allele num: 121304
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1040A>T
  hgvsp: ENSP00000335341.5:p.Asp347Val
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1040A>T
  hgvsp: ENSP00000355727.3:p.Asp347Val
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1040A>T
  hgvsp: ENSP00000355726.2:p.Asp347Val
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1040A>T
  hgvsp: ENSP00000443275.1:p.Asp347Val
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1040A>T
  hgvsp: ENSP00000355728.2:p.Asp347Val
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1040A>T
  hgvsp: ENSP00000355731.3:p.Asp347Val
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1040A>T
  hgvsp: ENSP00000355729.3:p.Asp347Val
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28611
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10537
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16328
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2333
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43202
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp347Val
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

1-227333301-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333301
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333301
    reference: chr 1
allele count: 1
allele frequency: 8.243615319934711e-6
allele num: 121306
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1032T>C
  hgvsp: ENST00000366764.2:c.1032T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1032T>C
  hgvsp: ENST00000366767.3:c.1032T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1032T>C
  hgvsp: ENST00000366766.2:c.1032T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1032T>C
  hgvsp: ENST00000366769.3:c.1032T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1032T>C
  hgvsp: ENST00000334218.5:c.1032T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1032T>C
  hgvsp: ENST00000366765.3:c.1032T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1032T>C
  hgvsp: ENST00000535525.1:c.1032T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10538
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28620
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2246
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser344Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

1-227333302-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333302
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333302
    reference: chr 1
allele count: 1
allele frequency: 8.243751236562685e-6
allele num: 121304
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1031G>A
  hgvsp: ENSP00000335341.5:p.Ser344Asn
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1031G>A
  hgvsp: ENSP00000443275.1:p.Ser344Asn
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1031G>A
  hgvsp: ENSP00000355726.2:p.Ser344Asn
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1031G>A
  hgvsp: ENSP00000355728.2:p.Ser344Asn
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1031G>A
  hgvsp: ENSP00000355727.3:p.Ser344Asn
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1031G>A
  hgvsp: ENSP00000355731.3:p.Ser344Asn
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1031G>A
  hgvsp: ENSP00000355729.3:p.Ser344Asn
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16348
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28620
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2334
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43228
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8742
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser344Asn
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum

1-227333312-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333312
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333312
    reference: chr 1
allele count: 7
allele frequency: 5.770150188766342e-5
allele num: 121314
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1021C>T
  hgvsp: ENSP00000355729.3:p.Pro341Ser
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1021C>T
  hgvsp: ENSP00000355726.2:p.Pro341Ser
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1021C>T
  hgvsp: ENSP00000335341.5:p.Pro341Ser
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1021C>T
  hgvsp: ENSP00000355731.3:p.Pro341Ser
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1021C>T
  hgvsp: ENSP00000443275.1:p.Pro341Ser
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1021C>T
  hgvsp: ENSP00000355727.3:p.Pro341Ser
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1021C>T
  hgvsp: ENSP00000355728.2:p.Pro341Ser
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10539
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2246
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2336
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro341Ser
num of homozygotes: 1
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP

1-227333313-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333313
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333313
    reference: chr 1
allele count: 2
allele frequency: 1.648641519388024e-5
allele num: 121312
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1020C>T
  hgvsp: ENST00000366769.3:c.1020C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1020C>T
  hgvsp: ENST00000334218.5:c.1020C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1020C>T
  hgvsp: ENST00000366764.2:c.1020C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1020C>T
  hgvsp: ENST00000366767.3:c.1020C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1020C>T
  hgvsp: ENST00000366765.3:c.1020C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1020C>T
  hgvsp: ENST00000366766.2:c.1020C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1020C>T
  hgvsp: ENST00000535525.1:c.1020C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16350
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2335
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8739
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 9.25e1
  variant carriers: 0
hgvs: p.His340His
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

1-227333316-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333316
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333316
    reference: chr 1
allele count: 1
allele frequency: 8.242664029014178e-6
allele num: 121320
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1017A>G
  hgvsp: ENST00000366767.3:c.1017A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1017A>G
  hgvsp: ENST00000366765.3:c.1017A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1017A>G
  hgvsp: ENST00000334218.5:c.1017A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1017A>G
  hgvsp: ENST00000366769.3:c.1017A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1017A>G
  hgvsp: ENST00000366766.2:c.1017A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1017A>G
  hgvsp: ENST00000366764.2:c.1017A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1017A>G
  hgvsp: ENST00000535525.1:c.1017A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28624
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10539
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16359
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2179
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Lys339Lys
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum

1-227333320-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333320
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333320
    reference: chr 1
allele count: 2
allele frequency: 1.648478454386601e-5
allele num: 121324
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1013A>G
  hgvsp: ENSP00000355728.2:p.Lys338Arg
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1013A>G
  hgvsp: ENSP00000355731.3:p.Lys338Arg
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1013A>G
  hgvsp: ENSP00000355727.3:p.Lys338Arg
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1013A>G
  hgvsp: ENSP00000355729.3:p.Lys338Arg
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1013A>G
  hgvsp: ENSP00000355726.2:p.Lys338Arg
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1013A>G
  hgvsp: ENSP00000443275.1:p.Lys338Arg
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1013A>G
  hgvsp: ENSP00000335341.5:p.Lys338Arg
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10539
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28628
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16368
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2336
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys338Arg
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

1-227333324-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333324
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333324
    reference: chr 1
allele count: 2
allele frequency: 1.648424106554134e-5
allele num: 121328
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.1009T>A
  hgvsp: ENSP00000355729.3:p.Phe337Ile
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.1009T>A
  hgvsp: ENSP00000355728.2:p.Phe337Ile
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.1009T>A
  hgvsp: ENSP00000443275.1:p.Phe337Ile
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.1009T>A
  hgvsp: ENSP00000355731.3:p.Phe337Ile
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.1009T>A
  hgvsp: ENSP00000355727.3:p.Phe337Ile
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.1009T>A
  hgvsp: ENSP00000355726.2:p.Phe337Ile
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.1009T>A
  hgvsp: ENSP00000335341.5:p.Phe337Ile
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16369
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Phe337Ile
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

1-227333351-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333351
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333351
    reference: chr 1
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.982C>A
  hgvsp: ENST00000334218.5:c.982C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.982C>A
  hgvsp: ENST00000366767.3:c.982C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.982C>A
  hgvsp: ENST00000366769.3:c.982C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.982C>A
  hgvsp: ENST00000366766.2:c.982C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.982C>A
  hgvsp: ENST00000535525.1:c.982C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.982C>A
  hgvsp: ENST00000366765.3:c.982C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.982C>A
  hgvsp: ENST00000366764.2:c.982C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10548
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43294
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2334
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg328Arg
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

1-227333357-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333357
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333357
    reference: chr 1
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.976G>A
  hgvsp: ENSP00000443275.1:p.Glu326Lys
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.976G>A
  hgvsp: ENSP00000355729.3:p.Glu326Lys
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.976G>A
  hgvsp: ENSP00000355728.2:p.Glu326Lys
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.976G>A
  hgvsp: ENSP00000355731.3:p.Glu326Lys
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.976G>A
  hgvsp: ENSP00000355727.3:p.Glu326Lys
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.976G>A
  hgvsp: ENSP00000355726.2:p.Glu326Lys
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.976G>A
  hgvsp: ENSP00000335341.5:p.Glu326Lys
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16402
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2176
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu326Lys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

1-227333370-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333370
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333370
    reference: chr 1
allele count: 6
allele frequency: 4.946658532161525e-5
allele num: 121294
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.963C>T
  hgvsp: ENST00000366769.3:c.963C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.963C>T
  hgvsp: ENST00000334218.5:c.963C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.963C>T
  hgvsp: ENST00000366765.3:c.963C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.963C>T
  hgvsp: ENST00000366767.3:c.963C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.963C>T
  hgvsp: ENST00000366764.2:c.963C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.963C>T
  hgvsp: ENST00000535525.1:c.963C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.963C>T
  hgvsp: ENST00000366766.2:c.963C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16356
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28619
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10542
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43245
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8734
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu321Leu
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

1-227333373-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333373
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333373
    reference: chr 1
allele count: 2
allele frequency: 1.649130908011478e-5
allele num: 121276
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.960G>A
  hgvsp: ENST00000366767.3:c.960G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.960G>A
  hgvsp: ENST00000334218.5:c.960G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.960G>A
  hgvsp: ENST00000366766.2:c.960G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.960G>A
  hgvsp: ENST00000366765.3:c.960G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.960G>A
  hgvsp: ENST00000535525.1:c.960G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.960G>A
  hgvsp: ENST00000366764.2:c.960G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.960G>A
  hgvsp: ENST00000366769.3:c.960G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28617
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2337
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg320Arg
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

1-227333375-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333375
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333375
    reference: chr 1
allele count: 2
allele frequency: 1.649375711293276e-5
allele num: 121258
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.958A>G
  hgvsp: ENSP00000355727.3:p.Arg320Gly
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.958A>G
  hgvsp: ENSP00000355731.3:p.Arg320Gly
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.958A>G
  hgvsp: ENSP00000355729.3:p.Arg320Gly
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.958A>G
  hgvsp: ENSP00000355726.2:p.Arg320Gly
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.958A>G
  hgvsp: ENSP00000335341.5:p.Arg320Gly
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.958A>G
  hgvsp: ENSP00000355728.2:p.Arg320Gly
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.958A>G
  hgvsp: ENSP00000443275.1:p.Arg320Gly
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10533
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28619
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16344
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2335
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43213
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg320Gly
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

1-227333377-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333377
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333377
    reference: chr 1
allele count: 1
allele frequency: 8.247558722618106e-6
allele num: 121248
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.956G>A
  hgvsp: ENSP00000355727.3:p.Arg319Gln
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.956G>A
  hgvsp: ENSP00000355726.2:p.Arg319Gln
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.956G>A
  hgvsp: ENSP00000355731.3:p.Arg319Gln
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.956G>A
  hgvsp: ENSP00000443275.1:p.Arg319Gln
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.956G>A
  hgvsp: ENSP00000335341.5:p.Arg319Gln
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.956G>A
  hgvsp: ENSP00000355729.3:p.Arg319Gln
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.956G>A
  hgvsp: ENSP00000355728.2:p.Arg319Gln
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16324
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28613
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10536
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1065
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2334
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8718
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg319Gln
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-227333378-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333378
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333378
    reference: chr 1
allele count: 1
allele frequency: 8.246878556466378e-6
allele num: 121258
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.955C>T
  hgvsp: ENSP00000355729.3:p.Arg319Ter
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.955C>T
  hgvsp: ENSP00000443275.1:p.Arg319Ter
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.955C>T
  hgvsp: ENSP00000355728.2:p.Arg319Ter
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.955C>T
  hgvsp: ENSP00000355726.2:p.Arg319Ter
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.955C>T
  hgvsp: ENSP00000355727.3:p.Arg319Ter
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.955C>T
  hgvsp: ENSP00000335341.5:p.Arg319Ter
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.955C>T
  hgvsp: ENSP00000355731.3:p.Arg319Ter
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16330
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10530
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28616
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8719
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2240
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg319Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/1-227333385-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333385
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333385
    reference: chr 1
allele count: 1
allele frequency: 8.251233559417133e-6
allele num: 121194
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.948T>G
  hgvsp: ENSP00000355731.3:p.Asp316Glu
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.948T>G
  hgvsp: ENSP00000335341.5:p.Asp316Glu
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.948T>G
  hgvsp: ENSP00000443275.1:p.Asp316Glu
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.948T>G
  hgvsp: ENSP00000355726.2:p.Asp316Glu
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.948T>G
  hgvsp: ENSP00000355728.2:p.Asp316Glu
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.948T>G
  hgvsp: ENSP00000355727.3:p.Asp316Glu
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.948T>G
  hgvsp: ENSP00000355729.3:p.Asp316Glu
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16295
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28593
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1065
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2237
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43126
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp316Glu
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP

1-227333388-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333388
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333388
    reference: chr 1
allele count: 2
allele frequency: 1.650464605786529e-5
allele num: 121178
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.945G>C
  hgvsp: ENSP00000335341.5:p.Lys315Asn
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.945G>C
  hgvsp: ENSP00000355727.3:p.Lys315Asn
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.945G>C
  hgvsp: ENSP00000355726.2:p.Lys315Asn
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.945G>C
  hgvsp: ENSP00000355731.3:p.Lys315Asn
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.945G>C
  hgvsp: ENSP00000355729.3:p.Lys315Asn
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.945G>C
  hgvsp: ENSP00000355728.2:p.Lys315Asn
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.945G>C
  hgvsp: ENSP00000443275.1:p.Lys315Asn
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16286
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10516
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2231
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Lys315Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
reference allele: C
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

1-227333390-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333390
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333390
    reference: chr 1
allele count: 1
allele frequency: 8.252731654177533e-6
allele num: 121172
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.943A>G
  hgvsp: ENSP00000355726.2:p.Lys315Glu
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.943A>G
  hgvsp: ENSP00000335341.5:p.Lys315Glu
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.943A>G
  hgvsp: ENSP00000443275.1:p.Lys315Glu
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.943A>G
  hgvsp: ENSP00000355728.2:p.Lys315Glu
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.943A>G
  hgvsp: ENSP00000355729.3:p.Lys315Glu
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.943A>G
  hgvsp: ENSP00000355731.3:p.Lys315Glu
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.943A>G
  hgvsp: ENSP00000355727.3:p.Lys315Glu
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28570
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10504
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2159
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Lys315Glu
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

1-227333399-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333399
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333399
    reference: chr 1
allele count: 1
allele frequency: 8.269109913008963e-6
allele num: 120932
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.934G>C
  hgvsp: ENSP00000335341.5:p.Glu312Gln
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.934G>C
  hgvsp: ENSP00000355727.3:p.Glu312Gln
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.934G>C
  hgvsp: ENSP00000355728.2:p.Glu312Gln
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.934G>C
  hgvsp: ENSP00000355731.3:p.Glu312Gln
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.934G>C
  hgvsp: ENSP00000355726.2:p.Glu312Gln
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.934G>C
  hgvsp: ENSP00000443275.1:p.Glu312Gln
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.934G>C
  hgvsp: ENSP00000355729.3:p.Glu312Gln
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16216
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28437
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10422
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2312
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42756
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2213
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu312Gln
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

1-227333449-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333449
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333449
    reference: chr 1
allele count: 1
allele frequency: 9.055346276441612e-6
allele num: 110432
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.895-11T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.895-11T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.895-11T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.895-11T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.895-11T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.895-11T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.895-11T>C
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13861
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9510
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5454
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33128
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 862
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1870
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/1-227333458-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333458
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333458
    reference: chr 1
allele count: 1
allele frequency: 9.298173838658088e-6
allele num: 107548
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.895-20T>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.895-20T>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.895-20T>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.895-20T>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.895-20T>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.895-20T>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.895-20T>G
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15937
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6346
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3448
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12000
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3585
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2052
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3225
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24687
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1651
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1139
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-227333467-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333467
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333467
    reference: chr 1
allele count: 1
allele frequency: 9.476517190402183e-6
allele num: 105524
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.895-29A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.895-29A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.895-29A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.895-29A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.895-29A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.895-29A>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.895-29A>G
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6832
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8836
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20401
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2685
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10551
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1018
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4714
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17572
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18485
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

1-227333473-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333473
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333473
    reference: chr 1
allele count: 1
allele frequency: 9.655119144170239e-6
allele num: 103572
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.895-35T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.895-35T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.895-35T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.895-35T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.895-35T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.895-35T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.895-35T>C
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7508
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6744
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21026
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11659
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7229
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7885
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ

1-227333483-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227333483
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227333483
    reference: chr 1
allele count: 1
allele frequency: 1.002948669087116e-5
allele num: 99706
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.895-45T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.895-45T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.895-45T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.895-45T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.895-45T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.895-45T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.895-45T>C
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15133
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20027
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6140
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8873
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1595
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6548
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2272
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2420
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ

1-227335011-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227335011
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227335011
    reference: chr 1
allele count: 15
allele frequency: 1.400324875371086e-4
allele num: 107118
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.894+49T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.894+49T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.894+49T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.894+49T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.894+49T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.894+49T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.894+49T>C
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3563
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14048
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12030
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9102
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6114
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12338
  bin: 1.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 21482
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2881
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2500
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4630
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3785
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

1-227335032-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227335032
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227335032
    reference: chr 1
allele count: 2
allele frequency: 1.786256542164586e-5
allele num: 111966
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.894+28T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.894+28T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.894+28T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.894+28T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.894+28T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.894+28T>C
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.894+28T>C
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3604
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4312
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4473
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33096
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11569
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43776
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/1-227335048-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227335048
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227335048
    reference: chr 1
allele count: 1
allele frequency: 8.536793580331227e-6
allele num: 117140
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.894+12T>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.894+12T>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.894+12T>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.894+12T>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.894+12T>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.894+12T>G
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.894+12T>G
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12840
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2082
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49190
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

1-227335051-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227335051
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227335051
    reference: chr 1
allele count: 2
allele frequency: 1.699697453853214e-5
allele num: 117668
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.894+9G>A
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.894+9G>A
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.894+9G>A
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.894+9G>A
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.894+9G>A
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.894+9G>A
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.894+9G>A
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12981
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4920
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS

1-227335067-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227335067
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227335067
    reference: chr 1
allele count: 2
allele frequency: 1.66433659543306e-5
allele num: 120168
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.887A>C
  hgvsp: ENSP00000355731.3:p.Asn296Thr
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.887A>C
  hgvsp: ENSP00000335341.5:p.Asn296Thr
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.887A>C
  hgvsp: ENSP00000443275.1:p.Asn296Thr
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.887A>C
  hgvsp: ENSP00000355729.3:p.Asn296Thr
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.887A>C
  hgvsp: ENSP00000355727.3:p.Asn296Thr
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.887A>C
  hgvsp: ENSP00000355726.2:p.Asn296Thr
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.887A>C
  hgvsp: ENSP00000355728.2:p.Asn296Thr
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13549
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5102
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51612
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asn296Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

1-227335072-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227335072
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227335072
    reference: chr 1
allele count: 1
allele frequency: 8.287888080359362e-6
allele num: 120658
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.882C>A
  hgvsp: ENST00000366767.3:c.882C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.882C>A
  hgvsp: ENST00000366769.3:c.882C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.882C>A
  hgvsp: ENST00000535525.1:c.882C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.882C>A
  hgvsp: ENST00000366764.2:c.882C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.882C>A
  hgvsp: ENST00000366766.2:c.882C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.882C>A
  hgvsp: ENST00000366765.3:c.882C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.882C>A
  hgvsp: ENST00000334218.5:c.882C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ile294Ile
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

1-227335081-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227335081
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227335081
    reference: chr 1
allele count: 5
allele frequency: 4.131275407343755e-5
allele num: 121028
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.873C>T
  hgvsp: ENST00000366766.2:c.873C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.873C>T
  hgvsp: ENST00000366767.3:c.873C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.873C>T
  hgvsp: ENST00000334218.5:c.873C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.873C>T
  hgvsp: ENST00000366764.2:c.873C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.873C>T
  hgvsp: ENST00000366765.3:c.873C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.873C>T
  hgvsp: ENST00000366769.3:c.873C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.873C>T
  hgvsp: ENST00000535525.1:c.873C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38645
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Tyr291Tyr
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

1-227335084-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227335084
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227335084
    reference: chr 1
allele count: 598
allele frequency: 4.937659978531913e-3
allele num: 121110
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.870A>G
  hgvsp: ENST00000535525.1:c.870A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.870A>G
  hgvsp: ENST00000334218.5:c.870A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.870A>G
  hgvsp: ENST00000366765.3:c.870A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.870A>G
  hgvsp: ENST00000366769.3:c.870A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.870A>G
  hgvsp: ENST00000366766.2:c.870A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.870A>G
  hgvsp: ENST00000366764.2:c.870A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.870A>G
  hgvsp: ENST00000366767.3:c.870A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 38303
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 3.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 9.75e1
  variant carriers: 147
genotype depth: GenotypeDepth
  all individuals: 5074
  bin: 3.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 13791
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5104
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr290Thr
num of homozygotes: 2
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ

1-227335099-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227335099
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227335099
    reference: chr 1
allele count: 1
allele frequency: 8.245654540057389e-6
allele num: 121276
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.855A>G
  hgvsp: ENST00000334218.5:c.855A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.855A>G
  hgvsp: ENST00000366769.3:c.855A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.855A>G
  hgvsp: ENST00000366765.3:c.855A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.855A>G
  hgvsp: ENST00000366767.3:c.855A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.855A>G
  hgvsp: ENST00000366764.2:c.855A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.855A>G
  hgvsp: ENST00000535525.1:c.855A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.855A>G
  hgvsp: ENST00000366766.2:c.855A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38257
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu285Glu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP

1-227335102-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 227335102
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 227335102
    reference: chr 1
allele count: 1
allele frequency: 8.243615319934711e-6
allele num: 121306
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355729
  ensembl transcript: ENST00000366767
  gene symbol: CDC42BPA
  hgvsc: ENST00000366767.3:c.852A>C
  hgvsp: ENST00000366767.3:c.852A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000335341
  ensembl transcript: ENST00000334218
  gene symbol: CDC42BPA
  hgvsc: ENST00000334218.5:c.852A>C
  hgvsp: ENST00000334218.5:c.852A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355727
  ensembl transcript: ENST00000366765
  gene symbol: CDC42BPA
  hgvsc: ENST00000366765.3:c.852A>C
  hgvsp: ENST00000366765.3:c.852A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355728
  ensembl transcript: ENST00000366766
  gene symbol: CDC42BPA
  hgvsc: ENST00000366766.2:c.852A>C
  hgvsp: ENST00000366766.2:c.852A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000443275
  ensembl transcript: ENST00000535525
  gene symbol: CDC42BPA
  hgvsc: ENST00000535525.1:c.852A>C
  hgvsp: ENST00000535525.1:c.852A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355731
  ensembl transcript: ENST00000366769
  gene symbol: CDC42BPA
  hgvsc: ENST00000366769.3:c.852A>C
  hgvsp: ENST00000366769.3:c.852A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000143776
  ensembl protein: ENSP00000355726
  ensembl transcript: ENST00000366764
  gene symbol: CDC42BPA
  hgvsc: ENST00000366764.2:c.852A>C
  hgvsp: ENST00000366764.2:c.852A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1737
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38245
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5287
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala284Ala
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 1494
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 923
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 954
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4915
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40085
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3478
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64172
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.819324430479184e-5
allele num: 10184
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15752
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6382
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e0

QD
type: SiteQuality
SIO_000300: 7.73e0

VQSLOD
type: SiteQuality
SIO_000300: -1.806e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.462e0

MQRankSum
type: SiteQuality
SIO_000300: 2.16e-1

FS
type: SiteQuality
SIO_000300: 2.808e0

DP
type: SiteQuality
SIO_000300: 1.509633e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.03e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

GenotypeQuality
all individuals: 242
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1154
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2331
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1442
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3479
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 313
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41176
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11344
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.325910931174089e-5
allele num: 15808
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 8.199999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.808e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.05e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.521693e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.69e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.869e0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1520
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 973
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3485
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 410
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510300247689241e-5
allele num: 66212
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16242
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.99e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.18e0

VQSLOD
type: SiteQuality
SIO_000300: -2.389e0

MQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.579623e6

FS
type: SiteQuality
SIO_000300: 1.505e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.45e-1

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1563
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 979
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1534
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45701
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3484
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16230
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507749834147518e-5
allele num: 66324
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.649999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.3e-2

MQ
type: SiteQuality
SIO_000300: 5.713e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.8e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.087e0

VQSLOD
type: SiteQuality
SIO_000300: -4.46e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.159e0

DP
type: SiteQuality
SIO_000300: 1.582127e6

GenotypeQuality
all individuals: 45309
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5308
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1555
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3482
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 403
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16136
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50879628232596e-5
allele num: 66278
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

MQ
type: SiteQuality
SIO_000300: 5.893e1

VQSLOD
type: SiteQuality
SIO_000300: -1.131e0

QD
type: SiteQuality
SIO_000300: 1.128e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.466e0

DP
type: SiteQuality
SIO_000300: 1.579189e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

GenotypeQuality
all individuals: 273
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3481
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 516
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1397
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5142
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1517
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.027734043841589e-5
allele num: 66056
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.254999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.624e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.007e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.67e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.91e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.43e-1

FS
type: SiteQuality
SIO_000300: 4.297e0

MQ
type: SiteQuality
SIO_000300: 5.88e1

DP
type: SiteQuality
SIO_000300: 1.564386e6

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5005
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1487
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517957436473481e-5
allele num: 65878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e0

QD
type: SiteQuality
SIO_000300: 1.301e1

MQRankSum
type: SiteQuality
SIO_000300: 1.37e-1

DP
type: SiteQuality
SIO_000300: 1.550183e6

FS
type: SiteQuality
SIO_000300: 7.559e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.928e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.62e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.04e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.97e0

GenotypeQuality
all individuals: 611
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3478
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39599
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4720
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.718395815170009e-5
allele num: 11470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.499415052645263e-5
allele num: 15386
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.229e0

MQRankSum
type: SiteQuality
SIO_000300: 5.99e-1

DP
type: SiteQuality
SIO_000300: 1.521628e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.91e1

VQSLOD
type: SiteQuality
SIO_000300: 1.3e0

QD
type: SiteQuality
SIO_000300: 1.432e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.051e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

GenotypeQuality
all individuals: 35844
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2607
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4399
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4328
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1400
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3478
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 910
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.514526710402999e-4
allele num: 8536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65316
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.196e0

MQRankSum
type: SiteQuality
SIO_000300: 5.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.26e-1

MQ
type: SiteQuality
SIO_000300: 5.909e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.274e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 1.2e1

DP
type: SiteQuality
SIO_000300: 1.473967e6

VQSLOD
type: SiteQuality
SIO_000300: 6.4e-1

GenotypeQuality
all individuals: 656
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1336
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5165
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6137
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3287
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3481
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 5438
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11350
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8360
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.920031360250882e-4
allele num: 10204
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64356
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.326e1

QD
type: SiteQuality
SIO_000300: 1.152e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.15e-1

FS
type: SiteQuality
SIO_000300: 1.612e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.003e0

DP
type: SiteQuality
SIO_000300: 1.362239e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.12e0

GenotypeQuality
all individuals: 3378
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5487
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3004
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11420
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3479
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1192
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3221
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5370
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11298
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.965795164143896e-4
allele num: 10174
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.565239168544954e-5
allele num: 63888
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14040
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.649e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.94e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

MQ
type: SiteQuality
SIO_000300: 5.88e1

DP
type: SiteQuality
SIO_000300: 1.360623e6

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

QD
type: SiteQuality
SIO_000300: 1.162e1

GenotypeQuality
all individuals: 1899
bin: 8.25e1
variant carriers: 1860

GenotypeQuality
all individuals: 271
bin: 7.5e0
variant carriers: 167

GenotypeQuality
all individuals: 27152
bin: 9.75e1
variant carriers: 26995

GenotypeQuality
all individuals: 2240
bin: 7.75e1
variant carriers: 2201

GenotypeQuality
all individuals: 873
bin: 8.75e1
variant carriers: 856

GenotypeQuality
all individuals: 3304
bin: 5.25e1
variant carriers: 3258

GenotypeQuality
all individuals: 1057
bin: 2.75e1
variant carriers: 698

GenotypeQuality
all individuals: 1521
bin: 4.25e1
variant carriers: 1415

GenotypeQuality
all individuals: 1719
bin: 2.25e1
variant carriers: 780

GenotypeQuality
all individuals: 1305
bin: 9.25e1
variant carriers: 1271

Other
type: Population
allele count: 628
allele frequency: 7.336448598130841e-1
allele num: 856
num of homozygotes: 227

South Asian
type: Population
allele count: 12384
allele frequency: 8.714989444053484e-1
allele num: 14210
num of homozygotes: 5396

European (Non-Finnish)
type: Population
allele count: 47082
allele frequency: 7.431574959749976e-1
allele num: 63354
num of homozygotes: 17332

Latino
type: Population
allele count: 7652
allele frequency: 6.886249100071994e-1
allele num: 11112
num of homozygotes: 2602

European (Finnish)
type: Population
allele count: 4676
allele frequency: 7.247365158090514e-1
allele num: 6452
num of homozygotes: 1711

African
type: Population
allele count: 6627
allele frequency: 6.56788899900892e-1
allele num: 10090
num of homozygotes: 2146

East Asian
type: Population
allele count: 6025
allele frequency: 7.340399610136452e-1
allele num: 8208
num of homozygotes: 2186

MQRankSum
type: SiteQuality
SIO_000300: 8.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.57e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.83e-2

DP
type: SiteQuality
SIO_000300: 1.531878e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e-1

QD
type: SiteQuality
SIO_000300: 2.871e1

MQ
type: SiteQuality
SIO_000300: 5.917e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

GenotypeQuality
all individuals: 437
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1268
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2567
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14378
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5311
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2755
bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12108
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60356
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7778
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.048760499897562e-4
allele num: 9762
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

DP
type: SiteQuality
SIO_000300: 1.229137e6

MQ
type: SiteQuality
SIO_000300: 5.911e1

QD
type: SiteQuality
SIO_000300: 8.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

FS
type: SiteQuality
SIO_000300: 9.997999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

VQSLOD
type: SiteQuality
SIO_000300: -7.335e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.96e-1

GenotypeQuality
all individuals: 584
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6884
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2496
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2753
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 855
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9037
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13591
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6372
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.722356183258698e-4
allele num: 11612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10742
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9660
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.911e1

MQRankSum
type: SiteQuality
SIO_000300: 1.9e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.710000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: 3.51e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.94e-1

DP
type: SiteQuality
SIO_000300: 1.178603e6

GenotypeQuality
all individuals: 1006
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9055
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13724
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5333
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 788
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2752
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10760
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.685942610513538e-5
allele num: 59314
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11664
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7608
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.55e-1

QD
type: SiteQuality
SIO_000300: 8.970000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: 1.49e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

DP
type: SiteQuality
SIO_000300: 1.177932e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.55e-1

GenotypeQuality
all individuals: 1732
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2172
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9195
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3115
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2752
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7468
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57650
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6310
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.502090459901178e-5
allele num: 10524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11060
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.209e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.77e0

MQRankSum
type: SiteQuality
SIO_000300: 2.22e0

QD
type: SiteQuality
SIO_000300: 1.629e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.23e-1

FS
type: SiteQuality
SIO_000300: 2.483e0

DP
type: SiteQuality
SIO_000300: 1.156443e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.53e-1

GenotypeQuality
all individuals: 543
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1479
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4267
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7519
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11445
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9252
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3179
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 742
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4479
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.1441111923921e-5
allele num: 10936
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57412
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6302
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.919e1

QD
type: SiteQuality
SIO_000300: 8.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.48e-1

DP
type: SiteQuality
SIO_000300: 1.152533e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.276e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

GenotypeQuality
all individuals: 219
bin: 7.5e0
variant carriers: 11

GenotypeQuality
all individuals: 200
bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 1745
bin: 7.25e1
variant carriers: 24

GenotypeQuality
all individuals: 342
bin: 5.25e1
variant carriers: 36

GenotypeQuality
all individuals: 14002
bin: 9.75e1
variant carriers: 12284

GenotypeQuality
all individuals: 318
bin: 8.75e1
variant carriers: 53

GenotypeQuality
all individuals: 617
bin: 2.75e1
variant carriers: 15

GenotypeQuality
all individuals: 315
bin: 9.25e1
variant carriers: 52

GenotypeQuality
all individuals: 1470
bin: 2.25e1
variant carriers: 34

GenotypeQuality
all individuals: 910
bin: 8.25e1
variant carriers: 76

European (Finnish)
type: Population
allele count: 504
allele frequency: 7.627118644067797e-2
allele num: 6608
num of homozygotes: 29

European (Non-Finnish)
type: Population
allele count: 8948
allele frequency: 1.367025177218284e-1
allele num: 65456
num of homozygotes: 654

Latino
type: Population
allele count: 818
allele frequency: 7.096998091271907e-2
allele num: 11526
num of homozygotes: 25

East Asian
type: Population
allele count: 3
allele frequency: 3.483511379470506e-4
allele num: 8612
num of homozygotes: 0

South Asian
type: Population
allele count: 666
allele frequency: 5.171610498524615e-2
allele num: 12878
num of homozygotes: 19

African
type: Population
allele count: 2522
allele frequency: 2.552631578947369e-1
allele num: 9880
num of homozygotes: 338

Other
type: Population
allele count: 113
allele frequency: 1.313953488372093e-1
allele num: 860
num of homozygotes: 7

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.87e-1

QD
type: SiteQuality
SIO_000300: 1.692e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.95e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.14e-2

MQ
type: SiteQuality
SIO_000300: 5.968e1

VQSLOD
type: SiteQuality
SIO_000300: 6.25e0

DP
type: SiteQuality
SIO_000300: 2.025589e6

GenotypeQuality
all individuals: 1076
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3690
bin: 9.75e1
variant carriers: 20

GenotypeQuality
all individuals: 287
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1089
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8133
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2306
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.287771100875454e-4
allele num: 65566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 7.562008469449486e-4
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12968
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.5e-2

DP
type: SiteQuality
SIO_000300: 1.732162e6

FS
type: SiteQuality
SIO_000300: 2.242e0

QD
type: SiteQuality
SIO_000300: 1.473e1

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.0e-2

MQ
type: SiteQuality
SIO_000300: 5.934e1

GenotypeQuality
all individuals: 1027
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2118
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2298
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13076
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9912
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65610
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.481086098862845e-4
allele num: 8618
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.95e-1

DP
type: SiteQuality
SIO_000300: 1.73647e6

MQ
type: SiteQuality
SIO_000300: 6.049e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.577e0

QD
type: SiteQuality
SIO_000300: 1.528e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

GenotypeQuality
all individuals: 979
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3669
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2141
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13260
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.667013347200555e-5
allele num: 11538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9950
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65672
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

DP
type: SiteQuality
SIO_000300: 1.740777e6

VQSLOD
type: SiteQuality
SIO_000300: 2.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.421e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-1

QD
type: SiteQuality
SIO_000300: 1.19e1

FS
type: SiteQuality
SIO_000300: 2.166e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

GenotypeQuality
all individuals: 71
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8139
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1086
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2141
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9960
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.665511265164645e-5
allele num: 11540
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.51089079164789e-5
allele num: 13314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65718
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.283e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.098e0

MQRankSum
type: SiteQuality
SIO_000300: 4.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.83e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.742081e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.34e-1

GenotypeQuality
all individuals: 1087
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37905
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2285
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3657
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 393
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9980
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159017153453871e-4
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65780
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.642e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

VQSLOD
type: SiteQuality
SIO_000300: 2.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

FS
type: SiteQuality
SIO_000300: 2.51e0

QD
type: SiteQuality
SIO_000300: 9.34e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.23e-2

DP
type: SiteQuality
SIO_000300: 1.747105e6

GenotypeQuality
all individuals: 1088
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3657
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2088
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2288
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9996
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.342143906020558e-5
allele num: 13620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65792
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.7482e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.47e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.67e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.396e1

VQSLOD
type: SiteQuality
SIO_000300: 4.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.67e-1

GenotypeQuality
all individuals: 48
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 403
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2121
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 38697
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 4202
bin: 9.75e1
variant carriers: 2069

GenotypeQuality
all individuals: 322
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 122
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 76
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2222
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 330
bin: 9.25e1
variant carriers: 11

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.824060999717594e-4
allele num: 14164
num of homozygotes: 0

Other
type: Population
allele count: 7
allele frequency: 7.990867579908675e-3
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

African
type: Population
allele count: 2141
allele frequency: 2.107698365820043e-1
allele num: 10158
num of homozygotes: 231

European (Non-Finnish)
type: Population
allele count: 57
allele frequency: 8.647631762599751e-4
allele num: 65914
num of homozygotes: 0

Latino
type: Population
allele count: 127
allele frequency: 1.0995670995671e-2
allele num: 11550
num of homozygotes: 2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.41e-1

FS
type: SiteQuality
SIO_000300: 1.276e0

MQRankSum
type: SiteQuality
SIO_000300: 1.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.8e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.656e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
SIO_000300: 1.636e1

DP
type: SiteQuality
SIO_000300: 1.808126e6

VQSLOD
type: SiteQuality
SIO_000300: 6.4e0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2272
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 288
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1069
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1540
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2206
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.02929326588107e-5
allele num: 66022
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10180
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14478
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

DP
type: SiteQuality
SIO_000300: 1.714201e6

QD
type: SiteQuality
SIO_000300: 1.283e1

FS
type: SiteQuality
SIO_000300: 3.518e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.42e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
all individuals: 40637
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1066
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2270
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 105
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1479
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10196
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66034
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.865302759851709e-5
allele num: 14566
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.4e-2

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.715945e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.55e0

FS
type: SiteQuality
SIO_000300: 2.44e0

VQSLOD
type: SiteQuality
SIO_000300: 7.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-3

QD
type: SiteQuality
SIO_000300: 1.256e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51336299524804e-5
allele num: 66078
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10206
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.47e-1

DP
type: SiteQuality
SIO_000300: 1.717538e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e-1

QD
type: SiteQuality
SIO_000300: 1.249e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 8.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.15e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.09e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
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allele count: 43
allele frequency: 6.473758694408479e-4
allele num: 66422
num of homozygotes: 0

South Asian
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allele count: 3
allele frequency: 1.896573523833607e-4
allele num: 15818
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.733307377846993e-5
allele num: 10274
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.7e-2

QD
type: SiteQuality
SIO_000300: 1.299e1

MQRankSum
type: SiteQuality
SIO_000300: 3.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.969e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.661e0

DP
type: SiteQuality
SIO_000300: 1.739054e6

FS
type: SiteQuality
SIO_000300: 5.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.82e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.665571235260003e-5
allele num: 10346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16336
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.3e-1

DP
type: SiteQuality
SIO_000300: 1.746664e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.561e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 8.837999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: -9.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.69e-1

QD
type: SiteQuality
SIO_000300: 1.195e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.19e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 70
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 25
allele frequency: 2.892179546506247e-3
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.351e1

MQ
type: SiteQuality
SIO_000300: 5.982e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.59e-1

FS
type: SiteQuality
SIO_000300: 1.113e0

MQRankSum
type: SiteQuality
SIO_000300: 4.64e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.56e0

DP
type: SiteQuality
SIO_000300: 1.749438e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.23e-1

GenotypeQuality
all individuals: 130
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50105073551486e-5
allele num: 66620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.389999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.04e-2

FS
type: SiteQuality
SIO_000300: 2.979e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.93e0

QD
type: SiteQuality
SIO_000300: 1.521e1

DP
type: SiteQuality
SIO_000300: 1.749149e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 333
bin: 8.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5004651441947e-5
allele num: 66646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.2725e1

DP
type: SiteQuality
SIO_000300: 1.749638e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.05e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.05e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 9.44e-1

QD
type: SiteQuality
SIO_000300: 1.428e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 22

Latino
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allele count: 21
allele frequency: 1.815038893690579e-3
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.5001500150015e-5
allele num: 66660
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.966e1

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66664
num of homozygotes: 0

Latino
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allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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BaseQRankSum
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SIO_000300: -5.39e-1

FS
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
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VQSLOD
type: SiteQuality
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QD
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MQ
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500060002400096e-5
allele num: 66664
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 8648
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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DP
type: SiteQuality
SIO_000300: 1.749758e6

QD
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MQ
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ClippingRankSum
type: SiteQuality
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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MQRankSum
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.499835018148004e-5
allele num: 66674
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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Other
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FS
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ReadPosRankSum
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QD
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ClippingRankSum
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MQRankSum
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DP
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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Other
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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DP
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ClippingRankSum
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QD
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BaseQRankSum
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MQRankSum
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MQ
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VQSLOD
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FS
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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East Asian
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QD
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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MQ
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FS
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MQRankSum
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InbreedingCoeff
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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num of homozygotes: 0

East Asian
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Latino
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European (Non-Finnish)
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South Asian
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Other
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African
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQ
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DP
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BaseQRankSum
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FS
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QD
type: SiteQuality
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

African
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European (Non-Finnish)
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South Asian
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Latino
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European (Finnish)
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Other
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BaseQRankSum
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MQ
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MQRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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QD
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

Other
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European (Non-Finnish)
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South Asian
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allele num: 16506
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Latino
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African
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East Asian
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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FS
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MQRankSum
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VQSLOD
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ClippingRankSum
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QD
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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East Asian
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African
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European (Finnish)
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Other
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South Asian
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DP
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MQRankSum
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ReadPosRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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FS
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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South Asian
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European (Non-Finnish)
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Latino
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East Asian
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QD
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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FS
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MQRankSum
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DP
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MQ
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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African
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Latino
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East Asian
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European (Non-Finnish)
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Other
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BaseQRankSum
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MQRankSum
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FS
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DP
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ReadPosRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.407e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.81e0

FS
type: SiteQuality
SIO_000300: 3.532e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.676e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.971e0

MQRankSum
type: SiteQuality
SIO_000300: -5.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.11e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

DP
type: SiteQuality
SIO_000300: 1.7502e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499430216517723e-5
allele num: 66692
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.63e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

FS
type: SiteQuality
SIO_000300: 4.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

QD
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SIO_000300: 1.178e1

VQSLOD
type: SiteQuality
SIO_000300: -1.053e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.158e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.92e-1

DP
type: SiteQuality
SIO_000300: 1.750393e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.406e0

QD
type: SiteQuality
SIO_000300: 5.600000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.43e0

VQSLOD
type: SiteQuality
SIO_000300: -3.887e0

FS
type: SiteQuality
SIO_000300: 7.91e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.567e0

MQ
type: SiteQuality
SIO_000300: 5.985e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

DP
type: SiteQuality
SIO_000300: 1.750326e6

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2336
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.029568589432865e-4
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499790029395885e-5
allele num: 66676
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.182e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.593e0

DP
type: SiteQuality
SIO_000300: 1.749785e6

MQRankSum
type: SiteQuality
SIO_000300: 8.35e-1

FS
type: SiteQuality
SIO_000300: 1.382e0

MQ
type: SiteQuality
SIO_000300: 5.987e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.08e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.85e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000120004800192e-5
allele num: 66664
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.979e1

DP
type: SiteQuality
SIO_000300: 1.749306e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.46e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.7e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.338e0

QD
type: SiteQuality
SIO_000300: 1.418e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.75e-1

GenotypeQuality
all individuals: 107
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 32
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000660145231951e-5
allele num: 66652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.66e-1

QD
type: SiteQuality
SIO_000300: 1.54e1

MQ
type: SiteQuality
SIO_000300: 5.962e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.49e0

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.74903e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.79e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66648
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.765e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.65e0

VQSLOD
type: SiteQuality
SIO_000300: -1.278e0

DP
type: SiteQuality
SIO_000300: 1.748788e6

QD
type: SiteQuality
SIO_000300: 1.368e1

MQRankSum
type: SiteQuality
SIO_000300: -1.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

FS
type: SiteQuality
SIO_000300: 8.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.5001500150015e-5
allele num: 66660
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.741e1

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
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DP
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QD
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.2e-1

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501140867058965e-5
allele num: 66616
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.55e0

InbreedingCoeff
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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QD
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.002822653294096e-5
allele num: 66604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele num: 906
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.6e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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QD
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BaseQRankSum
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ClippingRankSum
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SIO_000300: 7.43e-1

DP
type: SiteQuality
SIO_000300: 1.747049e6

VQSLOD
type: SiteQuality
SIO_000300: -3.257e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.65e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 51
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062810719049351e-5
allele num: 16494
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.13e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.052e0

MQRankSum
type: SiteQuality
SIO_000300: -8.38e-1

FS
type: SiteQuality
SIO_000300: 1.265e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.76e-1

QD
type: SiteQuality
SIO_000300: 1.928e1

DP
type: SiteQuality
SIO_000300: 1.746401e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.07e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504845602841149e-5
allele num: 66452
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.901e0

MQRankSum
type: SiteQuality
SIO_000300: -2.64e-1

QD
type: SiteQuality
SIO_000300: 1.515e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.3e-2

DP
type: SiteQuality
SIO_000300: 1.741619e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.02e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.233610341643582e-5
allele num: 10830
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14952
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7758
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6396
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.354e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.181e0

DP
type: SiteQuality
SIO_000300: 1.456638e6

MQ
type: SiteQuality
SIO_000300: 5.643e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7444
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6312
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.0827197921178e-4
allele num: 9236
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.756e0

VQSLOD
type: SiteQuality
SIO_000300: -1.582e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

MQ
type: SiteQuality
SIO_000300: 5.844e1

DP
type: SiteQuality
SIO_000300: 1.312105e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.309e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.13e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 750
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.095217823187172e-5
allele num: 14094
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7282
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6266
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9068
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

DP
type: SiteQuality
SIO_000300: 1.199021e6

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.811e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.41e-1

QD
type: SiteQuality
SIO_000300: 4.96e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6224
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13764
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.120322652924042e-4
allele num: 8926
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56350
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7114
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.48e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -8.0e-3

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.961e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.170686022008897e-4
allele num: 8542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13102
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6136
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10080
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6762
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54270
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.03e-1

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 5.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

DP
type: SiteQuality
SIO_000300: 1.071143e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 15

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7812
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60138
num of homozygotes: 0

South Asian
type: Population
allele count: 15
allele frequency: 1.270540403184821e-3
allele num: 11806
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11042
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9106
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

QD
type: SiteQuality
SIO_000300: 1.441e1

VQSLOD
type: SiteQuality
SIO_000300: 4.71e0

DP
type: SiteQuality
SIO_000300: 1.210062e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.581777918380259e-4
allele num: 12644
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8294
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9696
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62746
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.111e0

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 204
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GenotypeQuality
all individuals: 1060
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10232
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65392
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.745845723281441e-5
allele num: 11434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.041e0

VQSLOD
type: SiteQuality
SIO_000300: 3.52e-1

DP
type: SiteQuality
SIO_000300: 1.467086e6

MQRankSum
type: SiteQuality
SIO_000300: -6.3e-2

QD
type: SiteQuality
SIO_000300: 1.406e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

FS
type: SiteQuality
SIO_000300: 1.337e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

GenotypeQuality
all individuals: 37
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
all individuals: 115
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
all individuals: 105
bin: 4.25e1
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GenotypeQuality
all individuals: 1059
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 536
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1787
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.048687540014024e-5
allele num: 65602
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.408e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.625e0

DP
type: SiteQuality
SIO_000300: 1.475756e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.474e0

VQSLOD
type: SiteQuality
SIO_000300: 3.69e0

MQRankSum
type: SiteQuality
SIO_000300: 3.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.06e-1

FS
type: SiteQuality
SIO_000300: 8.06e-1

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
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GenotypeQuality
all individuals: 203
bin: 8.25e1
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GenotypeQuality
all individuals: 81
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1062
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.014772384684956e-5
allele num: 66340
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15788
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.09e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

QD
type: SiteQuality
SIO_000300: 1.135e1

DP
type: SiteQuality
SIO_000300: 1.504885e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.54e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.501e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.37e0

VQSLOD
type: SiteQuality
SIO_000300: 1.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.31e0

GenotypeQuality
all individuals: 210
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1060
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5138
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52073
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66472
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16112
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.564e0

DP
type: SiteQuality
SIO_000300: 1.51056e6

FS
type: SiteQuality
SIO_000300: 4.244e0

VQSLOD
type: SiteQuality
SIO_000300: 2.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.88e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.33e-1

MQ
type: SiteQuality
SIO_000300: 5.946e1

QD
type: SiteQuality
SIO_000300: 1.132e1

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52367
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1063
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 80
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5158
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.467406380027739e-4
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50177209106746e-5
allele num: 66588
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.117704637220115e-5
allele num: 16346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.599e0

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

FS
type: SiteQuality
SIO_000300: 6.96e-1

DP
type: SiteQuality
SIO_000300: 1.516338e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.18e0

QD
type: SiteQuality
SIO_000300: 1.338e1

MQRankSum
type: SiteQuality
SIO_000300: 1.56e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

MQ
type: SiteQuality
SIO_000300: 5.979e1

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52113
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1594
bin: 9.75e1
variant carriers: 596

GenotypeQuality
all individuals: 25
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 9
allele frequency: 8.653846153846154e-4
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 464
allele frequency: 6.966548555642303e-3
allele num: 66604
num of homozygotes: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 94
allele frequency: 5.733805050628278e-3
allele num: 16394
num of homozygotes: 0

Latino
type: Population
allele count: 13
allele frequency: 1.125736058191895e-3
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.222222222222222e-3
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 16
allele frequency: 2.420574886535552e-3
allele num: 6610
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.412e1

MQRankSum
type: SiteQuality
SIO_000300: 1.91e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.72e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

DP
type: SiteQuality
SIO_000300: 1.549047e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e0

FS
type: SiteQuality
SIO_000300: 6.77e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5242
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52684
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 98
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GenotypeQuality
all individuals: 518
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variant carriers: 0

GenotypeQuality
all individuals: 71
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GenotypeQuality
all individuals: 1018
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 184
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66666
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.617234083477592e-5
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.53e0

VQSLOD
type: SiteQuality
SIO_000300: -8.22e-2

QD
type: SiteQuality
SIO_000300: 1.665e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.248e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

FS
type: SiteQuality
SIO_000300: 4.535e0

DP
type: SiteQuality
SIO_000300: 1.522832e6