2-74717488-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717488
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717488
    reference: chr 2
allele count: 2
allele frequency: 1.659227795384028e-5
allele num: 120538
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.247C>T
  hgvsp: ENSP00000389127.1:p.Pro83Ser
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.359C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.350C>T
  hgvsp: ENSP00000233623.5:p.Pro117Leu
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.461C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.391C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.254C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.350C>T
  hgvsp: ENSP00000387213.1:p.Pro117Leu
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.247C>T
  hgvsp: ENSP00000388495.1:p.Pro83Ser
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.373C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.-83C>T
  variant of: http://identifiers.org/hgnc/25759
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19689
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7707
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1873
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro117Leu
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

2-74717490-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717490
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717490
    reference: chr 2
allele count: 2
allele frequency: 1.659751037344398e-5
allele num: 120500
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.352C>G
  hgvsp: ENSP00000387213.1:p.Gln118Glu
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.249C>G
  hgvsp: ENST00000449459.1:c.249C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.256C>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.393C>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.361C>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.352C>G
  hgvsp: ENSP00000233623.5:p.Gln118Glu
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.249C>G
  hgvsp: ENST00000424122.1:c.249C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.375C>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.463C>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.-81C>G
  variant of: http://identifiers.org/hgnc/25759
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29882
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7704
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gln118Glu
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-74717502-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717502
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717502
    reference: chr 2
allele count: 1
allele frequency: 8.328752519447637e-6
allele num: 120066
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.373C>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.364C>A
  hgvsp: ENSP00000387213.1:p.Pro122Thr
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.261C>A
  hgvsp: ENSP00000388495.1:p.Ser87Arg
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.-69C>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.268C>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.387C>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.261C>A
  hgvsp: ENSP00000389127.1:p.Ser87Arg
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.364C>A
  hgvsp: ENSP00000233623.5:p.Pro122Thr
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.405C>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.475C>A
  variant of: http://identifiers.org/hgnc/25759
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29719
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19299
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro122Thr
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

2-74717507-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717507
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717507
    reference: chr 2
allele count: 1
allele frequency: 8.392077878482712e-6
allele num: 119160
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.392C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.369C>T
  hgvsp: ENST00000233623.5:c.369C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.266C>T
  hgvsp: ENSP00000389127.1:p.Ala89Val
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.-64C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.369C>T
  hgvsp: ENST00000410003.1:c.369C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.480C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.266C>T
  hgvsp: ENSP00000388495.1:p.Ala89Val
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.410C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.273C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.378C>T
  variant of: http://identifiers.org/hgnc/25759
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18608
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43688
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala89Val
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff

2-74717508-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717508
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717508
    reference: chr 2
allele count: 4
allele frequency: 3.357056532832013e-5
allele num: 119152
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.-63C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.370C>T
  hgvsp: ENSP00000233623.5:p.Pro124Ser
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.411C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.481C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.267C>T
  hgvsp: ENST00000424122.1:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.379C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.267C>T
  hgvsp: ENST00000449459.1:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.393C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.370C>T
  hgvsp: ENSP00000387213.1:p.Pro124Ser
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.274C>T
  variant of: http://identifiers.org/hgnc/25759
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18629
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29222
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7542
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1455
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro124Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

2-74717509-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717509
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717509
    reference: chr 2
allele count: 1
allele frequency: 8.393768466290626e-6
allele num: 119136
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.-62C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.412C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.268C>T
  hgvsp: ENSP00000389127.1:p.Leu90Phe
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.275C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.371C>T
  hgvsp: ENSP00000387213.1:p.Pro124Leu
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.268C>T
  hgvsp: ENSP00000388495.1:p.Leu90Phe
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.380C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.482C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.371C>T
  hgvsp: ENSP00000233623.5:p.Pro124Leu
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.394C>T
  variant of: http://identifiers.org/hgnc/25759
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18642
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29264
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7489
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro124Leu
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQ

2-74717523-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717523
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717523
    reference: chr 2
allele count: 28
allele frequency: 2.39250803199125e-4
allele num: 117032
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.394G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.289G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.-48G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.385G>A
  hgvsp: ENSP00000233623.5:p.Ala129Thr
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.496G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.385G>A
  hgvsp: ENSP00000387213.1:p.Ala129Thr
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.408G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.282G>A
  hgvsp: ENST00000449459.1:c.282G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.282G>A
  hgvsp: ENST00000424122.1:c.282G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.426G>A
  variant of: http://identifiers.org/hgnc/25759
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18290
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28133
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6583
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala129Thr
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP

2-74717527-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717527
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717527
    reference: chr 2
allele count: 1
allele frequency: 8.614006374364718e-6
allele num: 116090
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.293C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.-44C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.412C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.389C>T
  hgvsp: ENSP00000387213.1:p.Ser130Phe
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.430C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.286C>T
  hgvsp: ENST00000449459.1:c.286C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.389C>T
  hgvsp: ENSP00000233623.5:p.Ser130Phe
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.286C>T
  hgvsp: ENST00000424122.1:c.286C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.398C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.500C>T
  variant of: http://identifiers.org/hgnc/25759
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18420
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6195
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser130Phe
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

2-74717541-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717541
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717541
    reference: chr 2
allele count: 1
allele frequency: 8.978433802007578e-6
allele num: 111378
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.300A>G
  hgvsp: ENST00000449459.1:c.300A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.403A>G
  hgvsp: ENSP00000387213.1:p.Ser135Gly
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.403A>G
  hgvsp: ENSP00000233623.5:p.Ser135Gly
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.514A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.300A>G
  hgvsp: ENST00000424122.1:c.300A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.426A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.444A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.412A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.307A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.-30A>G
  variant of: http://identifiers.org/hgnc/25759
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24235
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4573
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4974
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17783
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser135Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: A
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

2-74717544-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717544
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717544
    reference: chr 2
allele count: 6
allele frequency: 5.45960800014559e-5
allele num: 109898
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.447G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.-27G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.415G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.303G>A
  hgvsp: ENST00000424122.1:c.303G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.406G>A
  hgvsp: ENSP00000233623.5:p.Val136Ile
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.303G>A
  hgvsp: ENST00000449459.1:c.303G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.429G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.310G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.517G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.406G>A
  hgvsp: ENSP00000387213.1:p.Val136Ile
  variant of: http://identifiers.org/hgnc/25759
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4767
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5457
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23252
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17423
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val136Ile
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

2-74717554-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717554
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717554
    reference: chr 2
allele count: 707
allele frequency: 6.776834154477312e-3
allele num: 104326
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.-17G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.320G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.439G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.425G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.416G>A
  hgvsp: ENSP00000387213.1:p.Ser139Asn
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.313G>A
  hgvsp: ENSP00000389127.1:p.Ala105Thr
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.457G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.416G>A
  hgvsp: ENSP00000233623.5:p.Ser139Asn
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.527G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.313G>A
  hgvsp: ENSP00000388495.1:p.Ala105Thr
  variant of: http://identifiers.org/hgnc/25759
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7928
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 8163
  bin: 1.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 3.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19657
  bin: 2.75e1
  variant carriers: 147
genotype depth: GenotypeDepth
  all individuals: 15819
  bin: 2.25e1
  variant carriers: 128
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 1.75e1
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3927
  bin: 3.25e1
  variant carriers: 119
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser139Asn
num of homozygotes: 4
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

2-74717569-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717569
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717569
    reference: chr 2
allele count: 4
allele frequency: 4.292858829337397e-5
allele num: 93178
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.328C>T
  hgvsp: ENSP00000388495.1:p.Pro110Ser
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.-2C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.472C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.454C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.440C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.431C>T
  hgvsp: ENSP00000387213.1:p.Ala144Val
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.542C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.335C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.328C>T
  hgvsp: ENSP00000389127.1:p.Pro110Ser
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.431C>T
  hgvsp: ENSP00000233623.5:p.Ala144Val
  variant of: http://identifiers.org/hgnc/25759
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12738
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2540
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12794
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13416
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13446
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala144Val
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

2-74717571-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717571
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717571
    reference: chr 2
allele count: 1
allele frequency: 1.095386233185821e-5
allele num: 91292
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.474A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.442A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.433A>G
  hgvsp: ENSP00000387213.1:p.Met145Val
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.1A>G
  hgvsp: ENSP00000416823.2:p.Met1?
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.330A>G
  hgvsp: ENST00000449459.1:c.330A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.433A>G
  hgvsp: ENSP00000233623.5:p.Met145Val
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.456A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.337A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.330A>G
  hgvsp: ENST00000424122.1:c.330A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.544A>G
  variant of: http://identifiers.org/hgnc/25759
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11796
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14609
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13887
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12283
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20756
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/2-74717596-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717596
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717596
    reference: chr 2
allele count: 1
allele frequency: 1.379348395817816e-5
allele num: 72498
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*4A>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.481A>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.362A>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.26A>C
  hgvsp: ENSP00000416823.2:p.Glu9Ala
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.569A>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.458A>C
  hgvsp: ENSP00000233623.5:p.Glu153Ala
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.499A>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*4A>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.458A>C
  hgvsp: ENSP00000387213.1:p.Glu153Ala
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.467A>C
  variant of: http://identifiers.org/hgnc/25759
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5555
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20226
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu153Ala
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD

2-74717611-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717611
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717611
    reference: chr 2
allele count: 1
allele frequency: 1.701548409052238e-5
allele num: 58770
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.377C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*8+11C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.462+11C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.503+11C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.496C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.462+11C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*8+11C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.30+11C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.471+11C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.573+11C>T
  variant of: http://identifiers.org/hgnc/25759
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3152
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21699
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2918
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3245
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ

2-74717619-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717619
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717619
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 50438
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.504G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.385G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.462+19G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.573+19G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.462+19G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.471+19G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*8+19G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*8+19G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.503+19G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.30+19G>A
  variant of: http://identifiers.org/hgnc/25759
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 22652
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16645
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11078
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26458
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1312
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11970
  bin: 7.5e0
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

2-74717627-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717627
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717627
    reference: chr 2
allele count: 2
allele frequency: 4.587997797761057e-5
allele num: 43592
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.462+27C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.503+27C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.30+27C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.462+27C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.573+27C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.393C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.512C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*8+27C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*8+27C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.471+27C>T
  variant of: http://identifiers.org/hgnc/25759
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23763
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13938
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13295
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23024
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1317
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4154
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

2-74717628-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717628
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717628
    reference: chr 2
allele count: 2
allele frequency: 4.901720503896867e-5
allele num: 40802
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.471+28G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.462+28G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.513G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*8+28G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*8+28G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.573+28G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.503+28G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.394G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.462+28G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.30+28G>A
  variant of: http://identifiers.org/hgnc/25759
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13844
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24094
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13038
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-74717638-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717638
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717638
    reference: chr 2
allele count: 1
allele frequency: 2.647323555885e-5
allele num: 37774
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.404G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.462+38G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*8+38G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.523G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.471+38G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.573+38G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*8+38G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.462+38G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.503+38G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.30+38G>A
  variant of: http://identifiers.org/hgnc/25759
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3036
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14761
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11164
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25193
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4351
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff

2-74717640-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717640
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717640
    reference: chr 2
allele count: 1
allele frequency: 2.66851683834125e-5
allele num: 37474
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.406T>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.503+40T>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.30+40T>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.471+40T>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.573+40T>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.462+40T>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.462+40T>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.525T>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*8+40T>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*8+40T>C
  variant of: http://identifiers.org/hgnc/25759
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10933
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14784
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3055
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18739
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1116
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5820
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-74717644-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717644
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717644
    reference: chr 2
allele count: 1
allele frequency: 2.806466097889537e-5
allele num: 35632
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.410T>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*8+44T>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.529T>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.573+44T>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.503+44T>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.471+44T>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.30+44T>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.462+44T>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.462+44T>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*8+44T>G
  variant of: http://identifiers.org/hgnc/25759
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10154
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26083
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14746
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

2-74717652-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717652
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717652
    reference: chr 2
allele count: 100
allele frequency: 2.902252147666589e-3
allele num: 34456
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.471+52T>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*8+52T>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.573+52T>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.537T>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.462+52T>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.30+52T>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*8+52T>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.462+52T>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.503+52T>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.418T>C
  variant of: http://identifiers.org/hgnc/25759
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14585
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10018
  bin: 1.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 1.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26327
  bin: 7.5e0
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 2.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 13855
  bin: 2.25e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

2-74717732-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717732
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717732
    reference: chr 2
allele count: 1
allele frequency: 1.075662070004088e-5
allele num: 92966
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.498C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.463-51C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.463-51C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.617C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.472-51C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.31-51C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*9-51C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.574-51C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.504-51C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*9-51C>T
  variant of: http://identifiers.org/hgnc/25759
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12066
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19548
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3872
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12431
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5835
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2988
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

2-74717741-CCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717741
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717739
    reference: chr 2
allele count: 21
allele frequency: 2.25022502250225e-4
allele num: 93324
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.627_628delCT
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.31-41_31-40delCT
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.574-41_574-40delCT
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.508_509delCT
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*9-41_*9-40delCT
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*9-41_*9-40delCT
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.472-41_472-40delCT
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.463-41_463-40delCT
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.463-41_463-40delCT
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.504-41_504-40delCT
  variant of: http://identifiers.org/hgnc/25759
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9286
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12007
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4171
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19269
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9369
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1146
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3254
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10812
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: CCT
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

2-74717746-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717746
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717746
    reference: chr 2
allele count: 1
allele frequency: 1.060108131029365e-5
allele num: 94330
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.631T>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.463-37T>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.504-37T>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.463-37T>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.574-37T>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*9-37T>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.512T>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.472-37T>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.31-37T>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*9-37T>G
  variant of: http://identifiers.org/hgnc/25759
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18606
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11956
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4498
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7700
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6311
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4959
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

2-74717754-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717754
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717754
    reference: chr 2
allele count: 2
allele frequency: 2.088467482561296e-5
allele num: 95764
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.463-29T>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*9-29T>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.504-29T>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.639T>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*9-29T>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.520T>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.463-29T>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.574-29T>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.472-29T>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.31-29T>C
  variant of: http://identifiers.org/hgnc/25759
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15147
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4414
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11660
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5238
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2180
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4268
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD

2-74717767-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717767
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717767
    reference: chr 2
allele count: 198
allele frequency: 1.929711712765335e-3
allele num: 102606
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.574-16G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.533G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.31-16G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.463-16G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.472-16G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*9-16G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.504-16G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.652G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*9-16G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.463-16G>A
  variant of: http://identifiers.org/hgnc/25759
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6992
  bin: 2.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29958
  bin: 2.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 3.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7150
  bin: 1.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 1.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 8722
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 4.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2885
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

2-74717774-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717774
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717774
    reference: chr 2
allele count: 6
allele frequency: 5.632216277105041e-5
allele num: 106530
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.31-9G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.659G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.540G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.504-9G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*9-9G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.574-9G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.472-9G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.463-9G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*9-9G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.463-9G>A
  variant of: http://identifiers.org/hgnc/25759
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6871
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33573
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4725
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8061
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37691
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

2-74717780-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717780
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717780
    reference: chr 2
allele count: 6
allele frequency: 5.48867503384683e-5
allele num: 109316
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.31-3C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.574-3C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*9-3C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.463-3C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.504-3C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.546C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.472-3C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*9-3C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.665C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.463-3C>T
  variant of: http://identifiers.org/hgnc/25759
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3273
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5549
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8723
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35959
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 5.75e1
  variant carriers: 0
hgvs: c.463-3C>T
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-74717783-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717783
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717783
    reference: chr 2
allele count: 1
allele frequency: 9.068978651624254e-6
allele num: 110266
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*9G>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.549G>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.463G>T
  hgvsp: ENSP00000387213.1:p.Glu155Ter
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.463G>T
  hgvsp: ENSP00000233623.5:p.Glu155Ter
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.472G>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.668G>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.31G>T
  hgvsp: ENSP00000416823.2:p.Glu11Ter
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*9G>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.504G>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.574G>T
  variant of: http://identifiers.org/hgnc/25759
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36531
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu155Ter
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD

2-74717786-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717786
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717786
    reference: chr 2
allele count: 1
allele frequency: 9.009496008793267e-6
allele num: 110994
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.671G>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.34G>C
  hgvsp: ENSP00000416823.2:p.Ala12Pro
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*12G>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.466G>C
  hgvsp: ENSP00000233623.5:p.Ala156Pro
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.475G>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.552G>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.507G>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.466G>C
  hgvsp: ENSP00000387213.1:p.Ala156Pro
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*12G>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.577G>C
  variant of: http://identifiers.org/hgnc/25759
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37023
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9228
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2591
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4775
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala156Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

2-74717790-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717790
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717790
    reference: chr 2
allele count: 13
allele frequency: 1.162457972673296e-4
allele num: 111832
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.38A>G
  hgvsp: ENSP00000416823.2:p.Asn13Ser
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.470A>G
  hgvsp: ENSP00000233623.5:p.Asn157Ser
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*16A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.675A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.479A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.470A>G
  hgvsp: ENSP00000387213.1:p.Asn157Ser
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.511A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.581A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*16A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.556A>G
  variant of: http://identifiers.org/hgnc/25759
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9550
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4381
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37400
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5287
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asn157Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD

2-74717791-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717791
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717791
    reference: chr 2
allele count: 1
allele frequency: 8.936869950668478e-6
allele num: 111896
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.471T>G
  hgvsp: ENSP00000387213.1:p.Asn157Lys
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*17T>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.39T>G
  hgvsp: ENSP00000416823.2:p.Asn13Lys
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.557T>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.480T>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.471T>G
  hgvsp: ENSP00000233623.5:p.Asn157Lys
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*17T>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.582T>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.512T>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.676T>G
  variant of: http://identifiers.org/hgnc/25759
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4341
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9591
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn157Lys
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

2-74717792-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717792
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717792
    reference: chr 2
allele count: 4
allele frequency: 3.572704537334762e-5
allele num: 111960
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.481C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*18C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.513C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.40C>T
  hgvsp: ENSP00000416823.2:p.Arg14Cys
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.472C>T
  hgvsp: ENSP00000387213.1:p.Arg158Cys
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.558C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*18C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.677C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.472C>T
  hgvsp: ENSP00000233623.5:p.Arg158Cys
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.583C>T
  variant of: http://identifiers.org/hgnc/25759
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37283
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42560
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg158Cys
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-74717793-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717793
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717793
    reference: chr 2
allele count: 3
allele frequency: 2.674178135919561e-5
allele num: 112184
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.678G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*19G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.41G>A
  hgvsp: ENSP00000416823.2:p.Arg14His
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.473G>A
  hgvsp: ENSP00000233623.5:p.Arg158His
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.559G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.473G>A
  hgvsp: ENSP00000387213.1:p.Arg158His
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.584G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.482G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.514G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*19G>A
  variant of: http://identifiers.org/hgnc/25759
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2419
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37297
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg158His
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

2-74717794-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717794
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717794
    reference: chr 2
allele count: 1
allele frequency: 8.897113776290972e-6
allele num: 112396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.585C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.474C>T
  hgvsp: ENST00000233623.5:c.474C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.515C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.474C>T
  hgvsp: ENST00000410003.1:c.474C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.679C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.42C>T
  hgvsp: ENST00000442235.2:c.42C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*20C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.560C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.483C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*20C>T
  variant of: http://identifiers.org/hgnc/25759
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37431
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4096
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2415
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9931
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg158Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

2-74717798-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717798
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717798
    reference: chr 2
allele count: 21
allele frequency: 1.860976214951615e-4
allele num: 112844
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.683G>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.478G>T
  hgvsp: ENSP00000233623.5:p.Ala160Ser
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.564G>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.589G>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.519G>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*24G>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.487G>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*24G>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.478G>T
  hgvsp: ENSP00000387213.1:p.Ala160Ser
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.46G>T
  hgvsp: ENSP00000416823.2:p.Ala16Ser
  variant of: http://identifiers.org/hgnc/25759
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3871
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2447
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37378
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10161
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3538
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala160Ser
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-74717809-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717809
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717809
    reference: chr 2
allele count: 11
allele frequency: 9.719718658325381e-5
allele num: 113172
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.530G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*35G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.489G>A
  hgvsp: ENST00000410003.1:c.489G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.57G>A
  hgvsp: ENST00000442235.2:c.57G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.498G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.575G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.694G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.489G>A
  hgvsp: ENST00000233623.5:c.489G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*35G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.600G>A
  variant of: http://identifiers.org/hgnc/25759
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10770
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36776
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4916
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu163Leu
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

2-74717812-GGCT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717812
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717809
    reference: chr 2
allele count: 2
allele frequency: 1.768440412400304e-5
allele num: 113094
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.494_496delCTG
  hgvsp: ENSP00000387213.1:p.Ala165del
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*40_*42delCTG
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.699_701delCTG
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*40_*42delCTG
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.535_537delCTG
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.503_505delCTG
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.580_582delCTG
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.605_607delCTG
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.494_496delCTG
  hgvsp: ENSP00000233623.5:p.Ala165del
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.62_64delCTG
  hgvsp: ENSP00000416823.2:p.Ala21del
  variant of: http://identifiers.org/hgnc/25759
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36468
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10867
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3767
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala165del
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: GGCT
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

2-74717813-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717813
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717813
    reference: chr 2
allele count: 1
allele frequency: 8.840794964283189e-6
allele num: 113112
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.493G>T
  hgvsp: ENSP00000233623.5:p.Ala165Ser
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.698G>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*39G>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.579G>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.61G>T
  hgvsp: ENSP00000416823.2:p.Ala21Ser
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.502G>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*39G>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.493G>T
  hgvsp: ENSP00000387213.1:p.Ala165Ser
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.534G>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.604G>T
  variant of: http://identifiers.org/hgnc/25759
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2305
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36477
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala165Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP

2-74717833-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717833
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717833
    reference: chr 2
allele count: 7
allele frequency: 6.375576078838553e-5
allele num: 109794
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.81A>G
  hgvsp: ENST00000442235.2:c.81A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.599A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*59A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.513A>G
  hgvsp: ENST00000410003.1:c.513A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.554A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.513A>G
  hgvsp: ENST00000233623.5:c.513A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*59A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.718A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.522A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.624A>G
  variant of: http://identifiers.org/hgnc/25759
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31182
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4964
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2407
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5387
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11472
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Lys171Lys
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ

2-74717834-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717834
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717834
    reference: chr 2
allele count: 1
allele frequency: 9.160529112161519e-6
allele num: 109164
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.719C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.82C>T
  hgvsp: ENSP00000416823.2:p.Gln28Ter
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*60C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.514C>T
  hgvsp: ENSP00000387213.1:p.Gln172Ter
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.625C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.555C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.514C>T
  hgvsp: ENSP00000233623.5:p.Gln172Ter
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*60C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.600C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.523C>T
  variant of: http://identifiers.org/hgnc/25759
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5456
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30390
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gln172Ter
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS

2-74717834-CAGAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717834
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717830
    reference: chr 2
allele count: 1
allele frequency: 9.160529112161519e-6
allele num: 109164
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.722_725delAAAG
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.558_561delAAAG
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*63_*66delAAAG
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.603_606delAAAG
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*63_*66delAAAG
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.517_520delAAAG
  hgvsp: ENSP00000387213.1:p.Lys173GlnfsTer85
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.517_520delAAAG
  hgvsp: ENSP00000233623.5:p.Lys173GlnfsTer85
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.526_529delAAAG
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.628_631delAAAG
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.85_88delAAAG
  hgvsp: ENSP00000416823.2:p.Lys29GlnfsTer85
  variant of: http://identifiers.org/hgnc/25759
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5456
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37755
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Lys173GlnfsTer85
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: CAGAA
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

2-74717845-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717845
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717845
    reference: chr 2
allele count: 1
allele frequency: 9.482268158543524e-6
allele num: 105460
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.636G>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*71G>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.730G>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.93G>C
  hgvsp: ENSP00000416823.2:p.Glu31Asp
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.525G>C
  hgvsp: ENSP00000233623.5:p.Glu175Asp
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.525G>C
  hgvsp: ENSP00000387213.1:p.Glu175Asp
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.566G>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*71G>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.611G>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.534G>C
  variant of: http://identifiers.org/hgnc/25759
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26306
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10470
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8098
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32735
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu175Asp
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

2-74717852-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717852
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717852
    reference: chr 2
allele count: 1
allele frequency: 9.696123489828767e-6
allele num: 103134
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.532C>T
  hgvsp: ENSP00000387213.1:p.Arg178Ter
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.737C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*78C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.532C>T
  hgvsp: ENSP00000233623.5:p.Arg178Ter
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.100C>T
  hgvsp: ENSP00000416823.2:p.Arg34Ter
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.643C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.541C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*78C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.573C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.618C>T
  variant of: http://identifiers.org/hgnc/25759
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24056
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10149
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8401
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2640
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg178Ter
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

2-74717853-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717853
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717853
    reference: chr 2
allele count: 1
allele frequency: 9.776891339629651e-6
allele num: 102282
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.738G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.533G>A
  hgvsp: ENSP00000233623.5:p.Arg178Gln
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*79G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.533G>A
  hgvsp: ENSP00000387213.1:p.Arg178Gln
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.619G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*79G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.101G>A
  hgvsp: ENSP00000416823.2:p.Arg34Gln
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.644G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.542G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.574G>A
  variant of: http://identifiers.org/hgnc/25759
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22868
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11094
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8827
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2604
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg178Gln
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/2-74717858-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717858
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717858
    reference: chr 2
allele count: 1
allele frequency: 9.896286913150186e-6
allele num: 101048
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.538A>C
  hgvsp: ENSP00000387213.1:p.Lys180Gln
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*84A>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.579A>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.547A>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.538A>C
  hgvsp: ENSP00000233623.5:p.Lys180Gln
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.624A>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*84A>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.106A>C
  hgvsp: ENSP00000416823.2:p.Lys36Gln
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.649A>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.743A>C
  variant of: http://identifiers.org/hgnc/25759
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9430
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8613
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21495
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Lys180Gln
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

2-74717863-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717863
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717863
    reference: chr 2
allele count: 1
allele frequency: 1.010836163674592e-5
allele num: 98928
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.629G>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.111G>C
  hgvsp: ENSP00000416823.2:p.Lys37Asn
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.552G>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.748G>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*89G>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.543G>C
  hgvsp: ENSP00000387213.1:p.Lys181Asn
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*89G>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.543G>C
  hgvsp: ENSP00000233623.5:p.Lys181Asn
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.584G>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.654G>C
  variant of: http://identifiers.org/hgnc/25759
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14479
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7973
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18439
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Lys181Asn
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/2-74717864-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717864
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717864
    reference: chr 2
allele count: 9
allele frequency: 9.131678808417378e-5
allele num: 98558
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.749A>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.544A>C
  hgvsp: ENSP00000387213.1:p.Lys182Gln
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.553A>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.655A>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.630A>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.112A>C
  hgvsp: ENSP00000416823.2:p.Lys38Gln
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*90A>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.544A>C
  hgvsp: ENSP00000233623.5:p.Lys182Gln
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*90A>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.585A>C
  variant of: http://identifiers.org/hgnc/25759
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7831
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3312
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10500
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14947
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17816
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Lys182Gln
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

2-74717871-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717871
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717871
    reference: chr 2
allele count: 1
allele frequency: 1.047932429316958e-5
allele num: 95426
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.587+5C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.756C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.546+5C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.657+5C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.555+5C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.546+5C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.114+5C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*92+5C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.637C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*97C>T
  variant of: http://identifiers.org/hgnc/25759
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3883
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17681
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11581
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 1.25e1
  variant carriers: 0
hgvs: c.546+5C>T
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

2-74717885-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717885
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717885
    reference: chr 2
allele count: 14
allele frequency: 1.572786303278136e-4
allele num: 89014
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.546+19G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.657+19G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.651G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.555+19G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.587+19G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*92+19G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.114+19G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*111G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.770G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.546+19G>A
  variant of: http://identifiers.org/hgnc/25759
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22409
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7253
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5049
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13232
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4766
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD

2-74717888-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717888
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717888
    reference: chr 2
allele count: 8
allele frequency: 9.134297001667009e-5
allele num: 87582
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.546+22G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*114G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*92+22G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.114+22G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.555+22G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.657+22G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.546+22G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.587+22G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.654G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.773G>A
  variant of: http://identifiers.org/hgnc/25759
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22712
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6569
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4798
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13507
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5117
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP

2-74717889-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717889
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717889
    reference: chr 2
allele count: 1
allele frequency: 1.15738061618944e-5
allele num: 86402
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.546+23G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.655G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.114+23G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.587+23G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.555+23G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.774G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.546+23G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*115G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.657+23G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*92+23G>A
  variant of: http://identifiers.org/hgnc/25759
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13623
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22930
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5364
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26634
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1108
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

2-74717889-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717889
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717889
    reference: chr 2
allele count: 18
allele frequency: 2.083285109140992e-4
allele num: 86402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.114+23G>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*115G>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.546+23G>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.657+23G>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.774G>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*92+23G>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.587+23G>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.655G>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.555+23G>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.546+23G>T
  variant of: http://identifiers.org/hgnc/25759
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5941
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13623
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22930
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5364
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1108
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8428
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-74717897-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717897
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717897
    reference: chr 2
allele count: 2
allele frequency: 2.494698765124111e-5
allele num: 80170
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.663G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.546+31G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*123G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*92+31G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.657+31G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.587+31G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.114+31G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.546+31G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.782G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.555+31G>A
  variant of: http://identifiers.org/hgnc/25759
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3842
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22442
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3904
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1934
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5015
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

2-74717905-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717905
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717905
    reference: chr 2
allele count: 1
allele frequency: 1.35984117055128e-5
allele num: 73538
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.671G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*131G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.790G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.657+39G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.546+39G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.114+39G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.555+39G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.587+39G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*92+39G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.546+39G>A
  variant of: http://identifiers.org/hgnc/25759
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4566
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20733
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6890
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2924
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

2-74717906-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717906
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717906
    reference: chr 2
allele count: 2
allele frequency: 2.746649088112503e-5
allele num: 72816
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.114+40G>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.587+40G>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.791G>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.672G>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*132G>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.657+40G>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*92+40G>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.546+40G>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.555+40G>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.546+40G>C
  variant of: http://identifiers.org/hgnc/25759
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17685
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20392
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6924
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2730
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1109
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-74717907-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717907
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717907
    reference: chr 2
allele count: 2
allele frequency: 2.772310166061379e-5
allele num: 72142
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.657+41G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.114+41G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.555+41G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.546+41G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*92+41G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*133G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.792G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.587+41G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.546+41G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.673G>A
  variant of: http://identifiers.org/hgnc/25759
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20042
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2794
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6907
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4628
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3681
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

2-74717916-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74717916
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74717916
    reference: chr 2
allele count: 1
allele frequency: 1.61404867970818e-5
allele num: 61956
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.682G>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*142G>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.657+50G>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.546+50G>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.555+50G>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.587+50G>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.114+50G>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.801G>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.546+50G>C
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*92+50G>C
  variant of: http://identifiers.org/hgnc/25759
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4830
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6303
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2147
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5181
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1715
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

2-74718204-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74718204
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74718204
    reference: chr 2
allele count: 1
allele frequency: 8.287888080359362e-6
allele num: 120658
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*93-51C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.115-51C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*430C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.547-51C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.588-51C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.970C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.658-51C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.1089C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.547-51C>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.556-51C>T
  variant of: http://identifiers.org/hgnc/25759
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9224
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8108
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7390
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5221
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2124
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

2-74718208-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74718208
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74718208
    reference: chr 2
allele count: 7
allele frequency: 5.799214620648518e-5
allele num: 120706
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.547-47A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.115-47A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*434A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.556-47A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*93-47A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.658-47A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.547-47A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.974A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.1093A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.588-47A>G
  variant of: http://identifiers.org/hgnc/25759
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5221
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7400
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9232
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9733
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

2-74718212-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74718212
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74718212
    reference: chr 2
allele count: 2
allele frequency: 1.656973372437905e-5
allele num: 120702
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*438A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.547-43A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.978A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.115-43A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*93-43A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.556-43A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.658-43A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.588-43A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.1097A>G
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.547-43A>G
  variant of: http://identifiers.org/hgnc/25759
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7402
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9247
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8293
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5223
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

2-74718219-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74718219
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74718219
    reference: chr 2
allele count: 1
allele frequency: 8.283906027370025e-6
allele num: 120716
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.115-36G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.985G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.556-36G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.547-36G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*445G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.1104G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*93-36G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.547-36G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.588-36G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.658-36G>A
  variant of: http://identifiers.org/hgnc/25759
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8373
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7400
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9760
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5224
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9256
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3476
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2214
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2151
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD

2-74718219-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74718219
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74718219
    reference: chr 2
allele count: 8
allele frequency: 6.62712482189602e-5
allele num: 120716
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*93-36G>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.547-36G>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*445G>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.547-36G>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.985G>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.556-36G>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.588-36G>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.1104G>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.115-36G>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.658-36G>T
  variant of: http://identifiers.org/hgnc/25759
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3476
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9760
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7400
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8373
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9256
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5224
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2513
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/2-74718229-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74718229
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74718230
    reference: chr 2
allele count: 1
allele frequency: 8.283082632032337e-6
allele num: 120728
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.547-25dupA
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.547-25dupA
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.996dupA
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.658-25dupA
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.588-25dupA
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.556-25dupA
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*93-25dupA
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*456dupA
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.1115dupA
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.115-25dupA
  variant of: http://identifiers.org/hgnc/25759
canonical: false
consequence: 3' UTR
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 3476
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8398
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5196
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9262
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7410
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3359
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ

2-74718231-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74718231
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74718231
    reference: chr 2
allele count: 1
allele frequency: 8.282808203293245e-6
allele num: 120732
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.547-24T>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.997T>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.588-24T>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*93-24T>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.547-24T>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.1116T>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.658-24T>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*457T>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.115-24T>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.556-24T>A
  variant of: http://identifiers.org/hgnc/25759
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9264
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9785
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3476
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8398
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7409
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

2-74718236-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74718236
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74718236
    reference: chr 2
allele count: 1
allele frequency: 8.282670995742708e-6
allele num: 120734
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*462G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.547-19G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.658-19G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.547-19G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.1002G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.556-19G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.115-19G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*93-19G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.1121G>A
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.588-19G>A
  variant of: http://identifiers.org/hgnc/25759
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8409
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5226
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5204
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2464
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9786
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7410
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3476
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9266
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41503
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

2-74718248-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74718248
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74718248
    reference: chr 2
allele count: 1
allele frequency: 8.280750567231414e-6
allele num: 120762
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*474A>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.556-7A>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.588-7A>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.1133A>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.547-7A>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.115-7A>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.1014A>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.658-7A>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.547-7A>T
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*93-7A>T
  variant of: http://identifiers.org/hgnc/25759
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9270
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3476
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9790
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5226
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7413
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8424
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
hgvs: c.547-7A>T
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ

2-74718250-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 74718250
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 74718249
    reference: chr 2
allele count: 1
allele frequency: 8.280476292996373e-6
allele num: 120766
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000233623
  ensembl transcript: ENST00000233623
  gene symbol: TTC31
  hgvsc: ENST00000233623.5:c.547-4delG
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000416823
  ensembl transcript: ENST00000442235
  gene symbol: TTC31
  hgvsc: ENST00000442235.2:c.115-4delG
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000464241
  gene symbol: TTC31
  hgvsc: ENST00000464241.1:n.556-4delG
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000388495
  ensembl transcript: ENST00000424122
  gene symbol: TTC31
  hgvsc: ENST00000424122.1:c.*93-4delG
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000387213
  ensembl transcript: ENST00000410003
  gene symbol: TTC31
  hgvsc: ENST00000410003.1:c.547-4delG
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000463189
  gene symbol: TTC31
  hgvsc: ENST00000463189.1:n.588-4delG
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000489152
  gene symbol: TTC31
  hgvsc: ENST00000489152.1:n.1136delG
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000115282
  ensembl protein: ENSP00000389127
  ensembl transcript: ENST00000449459
  gene symbol: TTC31
  hgvsc: ENST00000449459.1:c.*477delG
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000459957
  gene symbol: TTC31
  hgvsc: ENST00000459957.1:n.658-4delG
  variant of: http://identifiers.org/hgnc/25759
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115282
  ensembl transcript: ENST00000491252
  gene symbol: TTC31
  hgvsc: ENST00000491252.1:n.1017delG
  variant of: http://identifiers.org/hgnc/25759
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8426
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9270
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7413
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5225
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9790
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5229
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 6.75e1
  variant carriers: 0
hgvs: c.547-4delG
num of homozygotes: 0
reference allele: TG

GenotypeQuality
all individuals: 1658
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1236
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 7979
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45976
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.044153720359771e-4
allele num: 9784
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66666
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.14e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.5e-1

DP
type: SiteQuality
SIO_000300: 1.618876e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

FS
type: SiteQuality
SIO_000300: 7.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.0e-3

QD
type: SiteQuality
SIO_000300: 9.9e0

GenotypeQuality
all individuals: 38
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45931
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1234
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1655
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7965
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1872
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 7.5e0
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.044571662236761e-4
allele num: 9782
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66658
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.97e1

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.36e-1

QD
type: SiteQuality
SIO_000300: 1.108e1

DP
type: SiteQuality
SIO_000300: 1.618225e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.08e-1

FS
type: SiteQuality
SIO_000300: 7.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45435
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7907
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1857
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1644
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.025641025641026e-4
allele num: 9750
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.365e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.817e0

FS
type: SiteQuality
SIO_000300: 3.898e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.65e-2

QD
type: SiteQuality
SIO_000300: 1.359e1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e0

DP
type: SiteQuality
SIO_000300: 1.611431e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.4e-1

MQ
type: SiteQuality
SIO_000300: 5.937e1

GenotypeQuality
all individuals: 276
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1606
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7523
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1230
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1459
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1780
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9668
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66060
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6294
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.143260842855388e-5
allele num: 16278
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.47e0

VQSLOD
type: SiteQuality
SIO_000300: 6.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.697e0

DP
type: SiteQuality
SIO_000300: 1.593771e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.79e-1

MQ
type: SiteQuality
SIO_000300: 5.946e1

MQRankSum
type: SiteQuality
SIO_000300: -7.63e-1

FS
type: SiteQuality
SIO_000300: 2.448e0

QD
type: SiteQuality
SIO_000300: 1.281e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-2

GenotypeQuality
all individuals: 313
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7509
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1779
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1230
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 55
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43866
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1603
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.751927119831815e-4
allele num: 11416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9670
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16278
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.028009084027252e-5
allele num: 66050
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.593105e6

QD
type: SiteQuality
SIO_000300: 1.092e1

FS
type: SiteQuality
SIO_000300: 1.2635e1

MQRankSum
type: SiteQuality
SIO_000300: -6.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.26e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.89e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.662e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.88e-1

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1465
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43998
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1226
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 251
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7504
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1597
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1777
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9670
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66042
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.144770800049158e-5
allele num: 16274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6292
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.69e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.365e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.22e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.124e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.068e0

QD
type: SiteQuality
SIO_000300: 1.263e1

DP
type: SiteQuality
SIO_000300: 1.592526e6

FS
type: SiteQuality
SIO_000300: 1.3448e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 42177
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6700
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1597
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1229
bin: 9.75e1
variant carriers: 28

GenotypeQuality
all individuals: 597
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1432
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3263
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11212
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15956
num of homozygotes: 0

East Asian
type: Population
allele count: 28
allele frequency: 3.305785123966942e-3
allele num: 8470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6064
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64992
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.965e1

FS
type: SiteQuality
SIO_000300: 2.008e0

VQSLOD
type: SiteQuality
SIO_000300: 3.34e0

MQRankSum
type: SiteQuality
SIO_000300: -1.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.576e0

QD
type: SiteQuality
SIO_000300: 1.118e1

DP
type: SiteQuality
SIO_000300: 1.544843e6

GenotypeQuality
all individuals: 460
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11070
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5992
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.060670343657191e-4
allele num: 9428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8414
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15866
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.17e-1

FS
type: SiteQuality
SIO_000300: 9.91e-1

DP
type: SiteQuality
SIO_000300: 1.52353e6

QD
type: SiteQuality
SIO_000300: 1.855e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.28e0

MQRankSum
type: SiteQuality
SIO_000300: 1.6e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.24e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62040
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5684
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15342
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.249063202598052e-4
allele num: 8006
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9020
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.433736e6

QD
type: SiteQuality
SIO_000300: 1.031e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.814e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 8.88e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.39e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 204
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15194
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.272264631043257e-3
allele num: 786
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.167532425103728e-5
allele num: 61218
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.489e0

FS
type: SiteQuality
SIO_000300: 7.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.408008e6

MQRankSum
type: SiteQuality
SIO_000300: -2.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.5e-2

QD
type: SiteQuality
SIO_000300: 1.134e1

GenotypeQuality
all individuals: 1805
bin: 9.75e1
variant carriers: 687

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 336
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1107
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 108
allele frequency: 2.039274924471299e-2
allele num: 5296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7372
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 7.070469007777516e-4
allele num: 8486
num of homozygotes: 0

Latino
type: Population
allele count: 13
allele frequency: 1.362397820163488e-3
allele num: 9542
num of homozygotes: 0

South Asian
type: Population
allele count: 22
allele frequency: 1.493550577053632e-3
allele num: 14730
num of homozygotes: 1

Other
type: Population
allele count: 3
allele frequency: 4.021447721179625e-3
allele num: 746
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 555
allele frequency: 9.543625545964165e-3
allele num: 58154
num of homozygotes: 3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.42e0

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-1

FS
type: SiteQuality
SIO_000300: 6.3e-1

QD
type: SiteQuality
SIO_000300: 1.268e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

DP
type: SiteQuality
SIO_000300: 1.311359e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.407e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 245
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GenotypeQuality
all individuals: 146
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8024
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.847485668115886e-5
allele num: 51982
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 672
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 4.264392324093816e-4
allele num: 4690
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13696
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.43e1

DP
type: SiteQuality
SIO_000300: 1.127655e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.97e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.556e0

VQSLOD
type: SiteQuality
SIO_000300: -1.987e0

QD
type: SiteQuality
SIO_000300: 7.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 664
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.31891321551042e-4
allele num: 7582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6220
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7800
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.63e-1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 7.908e0

MQ
type: SiteQuality
SIO_000300: 5.915e1

QD
type: SiteQuality
SIO_000300: 1.185e1

DP
type: SiteQuality
SIO_000300: 1.089119e6

VQSLOD
type: SiteQuality
SIO_000300: -4.113e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

ClippingRankSum
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SIO_000300: 1.02e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3494
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.608234158893535e-4
allele num: 6218
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40142
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5770
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.59e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.682e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.02e-2

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

VQSLOD
type: SiteQuality
SIO_000300: -9.734e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 1
allele frequency: 1.88821752265861e-4
allele num: 5296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2792
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.15021e5

QD
type: SiteQuality
SIO_000300: 1.258e1

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.67e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

FS
type: SiteQuality
SIO_000300: 3.096e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.214e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3221
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3083
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3260
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2980
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 822
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1115
bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27748
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2732
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3120
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.827e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.54227e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.54e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.693e-1

QD
type: SiteQuality
SIO_000300: 1.022e1

MQRankSum
type: SiteQuality
SIO_000300: -7.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.98e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1283
bin: 2.5e0
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4120
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 8.363301831563101e-5
allele num: 23914
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1910
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8724
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.909999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

FS
type: SiteQuality
SIO_000300: 5.449e0

DP
type: SiteQuality
SIO_000300: 6.08944e5

BaseQRankSum
type: SiteQuality
SIO_000300: 8.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.97e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.78e-1

QD
type: SiteQuality
SIO_000300: 8.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

GenotypeQuality
all individuals: 4617
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 2.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3914
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2016
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 8.963786303334529e-5
allele num: 22312
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2064
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1758
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8390
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.96469e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.26e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.75e-1

MQ
type: SiteQuality
SIO_000300: 5.855e1

VQSLOD
type: SiteQuality
SIO_000300: -1.788e0

FS
type: SiteQuality
SIO_000300: 2.756e0

QD
type: SiteQuality
SIO_000300: 1.227e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

GenotypeQuality
all individuals: 420
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1472
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 2964
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1118
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 63
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variant carriers: 0

GenotypeQuality
all individuals: 1957
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variant carriers: 0

GenotypeQuality
all individuals: 277
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variant carriers: 0

GenotypeQuality
all individuals: 2860
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3732
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8090
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 328
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1796
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 5.889281507656066e-4
allele num: 1698
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.307e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.072e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

DP
type: SiteQuality
SIO_000300: 5.71171e5

ClippingRankSum
type: SiteQuality
SIO_000300: 6.6e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.6e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.23e-2

GenotypeQuality
all individuals: 281
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1419
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1827
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2873
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15711
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2965
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1401
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 543
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variant carriers: 0

GenotypeQuality
all individuals: 4605
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 432
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GenotypeQuality
all individuals: 148
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
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variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
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GenotypeQuality
all individuals: 124
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1772
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1692
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.912073877591119e-5
allele num: 20358
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8076
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3708
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.25e-2

FS
type: SiteQuality
SIO_000300: 5.135e0

MQ
type: SiteQuality
SIO_000300: 6.012e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.52e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

QD
type: SiteQuality
SIO_000300: 1.688e1

DP
type: SiteQuality
SIO_000300: 5.67891e5

VQSLOD
type: SiteQuality
SIO_000300: -8.545e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e-1

GenotypeQuality
all individuals: 6490
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1117
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1877
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 534
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variant carriers: 0

GenotypeQuality
all individuals: 1434
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15447
bin: 7.5e0
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GenotypeQuality
all individuals: 15870
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 5.25e1
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GenotypeQuality
all individuals: 99
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GenotypeQuality
all individuals: 148
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GenotypeQuality
all individuals: 6560
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1492
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2920
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2845
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 312
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1670
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.185646131507986e-5
allele num: 19284
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.52e0

VQSLOD
type: SiteQuality
SIO_000300: -1.624e0

QD
type: SiteQuality
SIO_000300: 1.831e1

DP
type: SiteQuality
SIO_000300: 5.61901e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.39e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 395
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1214
bin: 9.75e1
variant carriers: 100

GenotypeQuality
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bin: 7.5e0
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
all individuals: 135
bin: 8.75e1
variant carriers: 8

GenotypeQuality
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bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 300
bin: 7.75e1
variant carriers: 5

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1376
bin: 6.25e1
variant carriers: 5

GenotypeQuality
all individuals: 2876
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 204
bin: 8.25e1
variant carriers: 9

GenotypeQuality
all individuals: 161
bin: 9.25e1
variant carriers: 9

GenotypeQuality
all individuals: 159
bin: 5.75e1
variant carriers: 10

South Asian
type: Population
allele count: 50
allele frequency: 6.456611570247934e-3
allele num: 7744
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.145922746781116e-3
allele num: 1398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 21
allele frequency: 1.133664435327143e-3
allele num: 18524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1374
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 1.237623762376238e-3
allele num: 1616
num of homozygotes: 0

African
type: Population
allele count: 24
allele frequency: 6.857142857142857e-3
allele num: 3500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 300
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.42e0

DP
type: SiteQuality
SIO_000300: 5.66438e5

QD
type: SiteQuality
SIO_000300: 1.322e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.39e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

GenotypeQuality
all individuals: 2984
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1078
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8480
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7030
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3499
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5063
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1868
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 8.75e1
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GenotypeQuality
all individuals: 9839
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 8.25e1
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GenotypeQuality
all individuals: 606
bin: 7.25e1
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GenotypeQuality
all individuals: 1195
bin: 5.75e1
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GenotypeQuality
all individuals: 4312
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1074
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2656
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 262
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4804
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.419498441905327e-5
allele num: 13478
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.72e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.45e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.08e-1

DP
type: SiteQuality
SIO_000300: 1.064595e6

QD
type: SiteQuality
SIO_000300: 1.372e1

GenotypeQuality
all individuals: 319
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1879
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6776
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2666
bin: 9.75e1
variant carriers: 21

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8312
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4802
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 21
allele frequency: 4.04889523001581e-4
allele num: 51866
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-1

MQ
type: SiteQuality
SIO_000300: 6.051e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-1

QD
type: SiteQuality
SIO_000300: 1.746e1

VQSLOD
type: SiteQuality
SIO_000300: 3.08e0

FS
type: SiteQuality
SIO_000300: 1.404e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

DP
type: SiteQuality
SIO_000300: 1.089138e6

GenotypeQuality
all individuals: 581
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6660
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.906941266209001e-5
allele num: 52440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7646
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.55e-1

DP
type: SiteQuality
SIO_000300: 1.110575e6

QD
type: SiteQuality
SIO_000300: 1.941e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.01e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -9.588e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 405
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 626
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variant carriers: 0

GenotypeQuality
all individuals: 262
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 509
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variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4946
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6782
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53218
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 706
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7754
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.455604075691412e-4
allele num: 13740
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.97e-1

FS
type: SiteQuality
SIO_000300: 1.1736e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.176351e6

VQSLOD
type: SiteQuality
SIO_000300: -1.788e0

QD
type: SiteQuality
SIO_000300: 7.71e0

GenotypeQuality
all individuals: 33216
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 10032
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variant carriers: 0

GenotypeQuality
all individuals: 716
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variant carriers: 1

GenotypeQuality
all individuals: 1459
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2765
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variant carriers: 3

GenotypeQuality
all individuals: 532
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GenotypeQuality
all individuals: 74
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GenotypeQuality
all individuals: 266
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 420
bin: 8.25e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 190

GenotypeQuality
all individuals: 438
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variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 4
allele frequency: 5.361930294906166e-3
allele num: 746
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 9.416195856873823e-4
allele num: 9558
num of homozygotes: 0

South Asian
type: Population
allele count: 70
allele frequency: 4.910902202890417e-3
allele num: 14254
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 59
allele frequency: 1.030423696252052e-3
allele num: 57258
num of homozygotes: 0

African
type: Population
allele count: 56
allele frequency: 6.8359375e-3
allele num: 8192
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5240
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.16e0

MQRankSum
type: SiteQuality
SIO_000300: 2.1e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.383e0

DP
type: SiteQuality
SIO_000300: 1.328376e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.5e-2

QD
type: SiteQuality
SIO_000300: 1.208e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 369
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
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variant carriers: 1

GenotypeQuality
all individuals: 1606
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variant carriers: 0

GenotypeQuality
all individuals: 1757
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variant carriers: 0

GenotypeQuality
all individuals: 3101
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variant carriers: 0

GenotypeQuality
all individuals: 90
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variant carriers: 0

GenotypeQuality
all individuals: 8014
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GenotypeQuality
all individuals: 2647
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variant carriers: 4

GenotypeQuality
all individuals: 269
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GenotypeQuality
all individuals: 73
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GenotypeQuality
all individuals: 48
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 455
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GenotypeQuality
all individuals: 758
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10038
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8458
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.854949273375377e-5
allele num: 14588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.395459735375109e-5
allele num: 59556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5432
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

QD
type: SiteQuality
SIO_000300: 8.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.07e-1

FS
type: SiteQuality
SIO_000300: 1.803e0

DP
type: SiteQuality
SIO_000300: 1.388128e6

VQSLOD
type: SiteQuality
SIO_000300: 1.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 138
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 277
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GenotypeQuality
all individuals: 6542
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variant carriers: 0

GenotypeQuality
all individuals: 3294
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GenotypeQuality
all individuals: 67
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GenotypeQuality
all individuals: 50
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2647
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 269
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GenotypeQuality
all individuals: 820
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 6.920415224913495e-4
allele num: 8670
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61032
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7970
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 8.81e-1

DP
type: SiteQuality
SIO_000300: 1.427488e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.862e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.958e0

QD
type: SiteQuality
SIO_000300: 1.205e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.77e-1

GenotypeQuality
all individuals: 966
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 372
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GenotypeQuality
all individuals: 31
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GenotypeQuality
all individuals: 567
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 523
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GenotypeQuality
all individuals: 3384
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GenotypeQuality
all individuals: 198
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GenotypeQuality
all individuals: 801
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GenotypeQuality
all individuals: 263
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8760
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8044
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61590
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.706008583690987e-5
allele num: 14912
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5672
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.18e-1

FS
type: SiteQuality
SIO_000300: 2.331e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.06e-1

DP
type: SiteQuality
SIO_000300: 1.439228e6

QD
type: SiteQuality
SIO_000300: 8.779999999999999e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.22e-1

GenotypeQuality
all individuals: 124
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 202
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GenotypeQuality
all individuals: 42222
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GenotypeQuality
all individuals: 29
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GenotypeQuality
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GenotypeQuality
all individuals: 520
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GenotypeQuality
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GenotypeQuality
all individuals: 227
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GenotypeQuality
all individuals: 346
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GenotypeQuality
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GenotypeQuality
all individuals: 22
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GenotypeQuality
all individuals: 2644
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GenotypeQuality
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GenotypeQuality
all individuals: 481
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GenotypeQuality
all individuals: 840
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GenotypeQuality
all individuals: 276
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GenotypeQuality
all individuals: 817
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variant carriers: 0

GenotypeQuality
all individuals: 5679
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61980
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.46073793755913e-5
allele num: 10570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8824
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5730
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14988
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8098
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.453e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.47e-1

QD
type: SiteQuality
SIO_000300: 9.859999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 1.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.928e1

FS
type: SiteQuality
SIO_000300: 3.702e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.716e0

DP
type: SiteQuality
SIO_000300: 1.449226e6

GenotypeQuality
all individuals: 33
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2654
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 404
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 862
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42760
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3460
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 844
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.586849852796859e-4
allele num: 8152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5780
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.008456930518627e-5
allele num: 62434
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.626027034190299e-5
allele num: 15092
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10672
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.79e-1

DP
type: SiteQuality
SIO_000300: 1.459246e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

MQ
type: SiteQuality
SIO_000300: 5.937e1

QD
type: SiteQuality
SIO_000300: 1.159e1

GenotypeQuality
all individuals: 201
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 744
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42679
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 714
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
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variant carriers: 0

GenotypeQuality
all individuals: 3466
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5261
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 846
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 863
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2643
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 490
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8164
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.601075923020269e-5
allele num: 62458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15098
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5788
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10680
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.195e0

QD
type: SiteQuality
SIO_000300: 1.85e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.3e-1

FS
type: SiteQuality
SIO_000300: 1.5836e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.7e0

DP
type: SiteQuality
SIO_000300: 1.460315e6

GenotypeQuality
all individuals: 71
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5208
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 530
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variant carriers: 0

GenotypeQuality
all individuals: 866
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variant carriers: 0

GenotypeQuality
all individuals: 477
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variant carriers: 0

GenotypeQuality
all individuals: 106
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variant carriers: 0

GenotypeQuality
all individuals: 427
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variant carriers: 0

GenotypeQuality
all individuals: 832
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variant carriers: 0

GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 3450
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2646
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 193
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8898
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.870907390084191e-4
allele num: 10690
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8170
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5788
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.323451561672843e-4
allele num: 15112
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.55e-1

FS
type: SiteQuality
SIO_000300: 2.137e0

MQ
type: SiteQuality
SIO_000300: 5.923e1

DP
type: SiteQuality
SIO_000300: 1.463299e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.08e0

VQSLOD
type: SiteQuality
SIO_000300: 7.0e-1

QD
type: SiteQuality
SIO_000300: 1.111e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.91e-1

GenotypeQuality
all individuals: 687
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 876
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variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42670
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3483
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5112
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2646
bin: 9.75e1
variant carriers: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8186
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.243158366980709e-4
allele num: 8916
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62618
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.60763843002511e-5
allele num: 15134
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10708
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.466025e6

VQSLOD
type: SiteQuality
SIO_000300: 5.679999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.83e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

QD
type: SiteQuality
SIO_000300: 8.460000000000001e0

GenotypeQuality
all individuals: 199
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5012
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
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GenotypeQuality
all individuals: 608
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variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3507
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variant carriers: 0

GenotypeQuality
all individuals: 45
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variant carriers: 0

GenotypeQuality
all individuals: 887
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variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43197
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2643
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 488
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.597176408497163e-5
allele num: 15158
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8204
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8946
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

DP
type: SiteQuality
SIO_000300: 1.468521e6

FS
type: SiteQuality
SIO_000300: 3.78e0

VQSLOD
type: SiteQuality
SIO_000300: -1.58e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.35e0

QD
type: SiteQuality
SIO_000300: 8.949999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.835e0

MQRankSum
type: SiteQuality
SIO_000300: -1.458e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2657
bin: 9.75e1
variant carriers: 19

GenotypeQuality
all individuals: 883
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 841
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
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variant carriers: 0

GenotypeQuality
all individuals: 271
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variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 362
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variant carriers: 0

GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
all individuals: 601
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GenotypeQuality
all individuals: 42926
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variant carriers: 0

GenotypeQuality
all individuals: 4855
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 47
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 496
bin: 8.25e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

African
type: Population
allele count: 19
allele frequency: 2.114870881567231e-3
allele num: 8984
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.852194850898315e-4
allele num: 10798
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8240
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62944
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5846
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.474243e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.435e0

MQRankSum
type: SiteQuality
SIO_000300: 2.06e-1

FS
type: SiteQuality
SIO_000300: 5.34e-1

QD
type: SiteQuality
SIO_000300: 1.096e1

MQ
type: SiteQuality
SIO_000300: 5.953e1

VQSLOD
type: SiteQuality
SIO_000300: 3.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.98e-1

GenotypeQuality
all individuals: 194
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3554
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variant carriers: 1

GenotypeQuality
all individuals: 556
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 113
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GenotypeQuality
all individuals: 18
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GenotypeQuality
all individuals: 880
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variant carriers: 0

GenotypeQuality
all individuals: 46
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variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 476
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GenotypeQuality
all individuals: 202
bin: 4.25e1
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GenotypeQuality
all individuals: 43221
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variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2651
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 404
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10842
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.109139307897072e-4
allele num: 9016
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8272
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.568575932737783e-4
allele num: 15224
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5860
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

FS
type: SiteQuality
SIO_000300: 1.729e0

MQ
type: SiteQuality
SIO_000300: 5.927e1

DP
type: SiteQuality
SIO_000300: 1.479596e6

MQRankSum
type: SiteQuality
SIO_000300: 4.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.104e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.53e-1

QD
type: SiteQuality
SIO_000300: 1.11e1

GenotypeQuality
all individuals: 796
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 874
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
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variant carriers: 0

GenotypeQuality
all individuals: 42940
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5062
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 3.75e1
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GenotypeQuality
all individuals: 417
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GenotypeQuality
all individuals: 111
bin: 7.5e0
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GenotypeQuality
all individuals: 612
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15200
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.168869030642964e-5
allele num: 63114
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5844
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10842
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9012
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e-1

FS
type: SiteQuality
SIO_000300: 1.133e0

DP
type: SiteQuality
SIO_000300: 1.477468e6

QD
type: SiteQuality
SIO_000300: 1.957e1

VQSLOD
type: SiteQuality
SIO_000300: 3.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

MQ
type: SiteQuality
SIO_000300: 5.861e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.45e-1

GenotypeQuality
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10846
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.584283903675539e-5
allele num: 63120
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15208
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

QD
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.553e0

MQRankSum
type: SiteQuality
SIO_000300: -1.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.32e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -4.252e-1

FS
type: SiteQuality
SIO_000300: 1.177e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.478078e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 7
allele frequency: 8.0e-4
allele num: 8750
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7966
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61316
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5690
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14854
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

VQSLOD
type: SiteQuality
SIO_000300: 4.52e0

MQRankSum
type: SiteQuality
SIO_000300: -1.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.620000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

QD
type: SiteQuality
SIO_000300: 1.261e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.43e-1

DP
type: SiteQuality
SIO_000300: 1.431108e6

MQ
type: SiteQuality
SIO_000300: 5.95e1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.148369315571888e-4
allele num: 8708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5666
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7910
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14794
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60948
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.256e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.65e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.87e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

DP
type: SiteQuality
SIO_000300: 1.420578e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.27e-1

MQ
type: SiteQuality
SIO_000300: 5.836e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1141
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.75949709341625e-5
allele num: 14794
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8708
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5666
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7910
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60948
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.420578e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.65e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.99e-1

InbreedingCoeff
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SIO_000300: 1.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.43e-1

MQ
type: SiteQuality
SIO_000300: 5.836e1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.256e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.696295291084272e-5
allele num: 58952
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9812
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7568
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

FS
type: SiteQuality
SIO_000300: 7.182e0

MQ
type: SiteQuality
SIO_000300: 5.82e1

BaseQRankSum
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MQRankSum
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ClippingRankSum
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QD
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

DP
type: SiteQuality
SIO_000300: 1.36341e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.732982115624567e-5
allele num: 57704
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9420
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.421e-1

MQRankSum
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InbreedingCoeff
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QD
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FS
type: SiteQuality
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ClippingRankSum
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DP
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 7.067137809187279e-5
allele num: 14150
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57194
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9326
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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DP
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7206
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9120
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.769786209825853e-5
allele num: 56504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.61e0

MQ
type: SiteQuality
SIO_000300: 5.896e1

MQRankSum
type: SiteQuality
SIO_000300: -4.9e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -7.321e-1

QD
type: SiteQuality
SIO_000300: 7.91e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

DP
type: SiteQuality
SIO_000300: 1.273189e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.3e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 175
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5180
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.25250501002004e-4
allele num: 7984
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7028
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.229639e6

MQRankSum
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SIO_000300: 7.199999999999999e-2

FS
type: SiteQuality
SIO_000300: 1.3947e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.4e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.03e0

MQ
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SIO_000300: 5.845e1

BaseQRankSum
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SIO_000300: 4.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

QD
type: SiteQuality
SIO_000300: 1.324e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.87e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 708
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6998
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.634224288204532e-4
allele num: 55072
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13862
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7958
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5162
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.84e0

FS
type: SiteQuality
SIO_000300: 4.289e0

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

MQRankSum
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SIO_000300: -2.47e-1

MQ
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SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.65e-1

QD
type: SiteQuality
SIO_000300: 1.101e1

DP
type: SiteQuality
SIO_000300: 1.220252e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5004
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 694
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.874906254687266e-5
allele num: 53336
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6734
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

DP
type: SiteQuality
SIO_000300: 1.163964e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.31e0

FS
type: SiteQuality
SIO_000300: 1.502e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.15e0

QD
type: SiteQuality
SIO_000300: 1.206e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.31e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 15

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7238
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13014
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 1.6116035455278e-3
allele num: 7446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.026899689928724e-5
allele num: 49666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4766
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.043e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.528e0

MQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

FS
type: SiteQuality
SIO_000300: 9.55e-1

DP
type: SiteQuality
SIO_000300: 1.0498e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7276
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.433897332950961e-4
allele num: 48818
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 7.753140021708792e-5
allele num: 12898
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.9e-2

ClippingRankSum
type: SiteQuality
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FS
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.75e-1

QD
type: SiteQuality
SIO_000300: 1.274e1

DP
type: SiteQuality
SIO_000300: 1.035578e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele frequency: 1.672800267648043e-4
allele num: 5978
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12784
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 48206
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7068
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4654
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.573e0

MQRankSum
type: SiteQuality
SIO_000300: -4.9e-2

FS
type: SiteQuality
SIO_000300: 1.506e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-2

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 8.999999999999999e-3

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 2.9e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4654
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 4.244482173174873e-4
allele num: 7068
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.415227851684121e-4
allele num: 7066
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 6.691201070592171e-4
allele num: 5978
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48206
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 7.822277847309136e-4
allele num: 12784
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.022941e6

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 8.999999999999999e-3

VQSLOD
type: SiteQuality
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BaseQRankSum
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SIO_000300: -1.573e0

FS
type: SiteQuality
SIO_000300: 1.506e0

QD
type: SiteQuality
SIO_000300: 1.198e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.473872584108804e-5
allele num: 44704
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6084
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6670
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.18e-2

FS
type: SiteQuality
SIO_000300: 1.863e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.29e-1

DP
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SIO_000300: 9.69e5

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.711e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.496e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4966
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11628
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.442121715346293e-5
allele num: 40948
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4018
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e-1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

DP
type: SiteQuality
SIO_000300: 9.27051e5

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.651e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.72e-2

MQ
type: SiteQuality
SIO_000300: 5.964e1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5082
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6164
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4912
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.465604812860595e-5
allele num: 40558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3968
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.006e-1

DP
type: SiteQuality
SIO_000300: 9.21587e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.73e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 8.080000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.749e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.979087831109341e-5
allele num: 40168
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4980
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3920
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4830
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.755e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.908e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e0

QD
type: SiteQuality
SIO_000300: 9.57e0

MQRankSum
type: SiteQuality
SIO_000300: 2.15e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.16308e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.016e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34246
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 3982
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10602
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3776
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.830831197363603e-4
allele num: 5462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.89537e5

QD
type: SiteQuality
SIO_000300: 1.992e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.51e-1

FS
type: SiteQuality
SIO_000300: 5.693e0

MQRankSum
type: SiteQuality
SIO_000300: -1.564e0

BaseQRankSum
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SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.13e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.174e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.91e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

MQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.44e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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VQSLOD
type: SiteQuality
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QD
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.729206294310911e-4
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020199959192002e-4
allele num: 9802
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.997361161089121e-5
allele num: 66696
num of homozygotes: 0

East Asian
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allele count: 0
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MQRankSum
type: SiteQuality
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QD
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.764485e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.3e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.729206294310911e-4
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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South Asian
type: Population
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allele num: 16512
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 1.7e-3

BaseQRankSum
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MQRankSum
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ClippingRankSum
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QD
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DP
type: SiteQuality
SIO_000300: 2.766744e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.54e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.14e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
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Latino
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allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.315e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.07e0

FS
type: SiteQuality
SIO_000300: 7.49e-1

DP
type: SiteQuality
SIO_000300: 2.76943e6

MQRankSum
type: SiteQuality
SIO_000300: -6.27e-1

QD
type: SiteQuality
SIO_000300: 1.302e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 8

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 8
allele frequency: 9.280742459396752e-4
allele num: 8620
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.27e-1

DP
type: SiteQuality
SIO_000300: 2.76943e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.07e0

FS
type: SiteQuality
SIO_000300: 7.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

QD
type: SiteQuality
SIO_000300: 1.302e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.315e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.019991840065279e-4
allele num: 9804
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.604e0

QD
type: SiteQuality
SIO_000300: 1.771e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.36e-1

FS
type: SiteQuality
SIO_000300: 7.393e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.28e-1

DP
type: SiteQuality
SIO_000300: 2.771191e6

MQ
type: SiteQuality
SIO_000300: 5.95e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.019991840065279e-4
allele num: 9804
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 5.952e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.83e0

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.191e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.59e0

MQRankSum
type: SiteQuality
SIO_000300: 1.93e0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.178e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8622
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
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BaseQRankSum
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.966e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
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allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9804
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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FS
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ClippingRankSum
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MQ
type: SiteQuality
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