1-2489746-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2489746
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2489746
    reference: chr 1
allele count: 6
allele frequency: 5.172681345586841e-5
allele num: 115994
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.287-36C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.23-36C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.179-36C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.179-36C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.179-36C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.179-36C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.439-36C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.179-36C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.179-36C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.438-36C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.273-36C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-1045C>T
  variant of: http://identifiers.org/hgnc/11912
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2309
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7545
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8386
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2957
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7069
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8055
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-2489747-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2489747
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2489747
    reference: chr 1
allele count: 2
allele frequency: 1.721525960611486e-5
allele num: 116176
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.23-35G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-1044G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.179-35G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.179-35G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.179-35G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.287-35G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.179-35G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.438-35G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.179-35G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.179-35G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.273-35G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.439-35G>A
  variant of: http://identifiers.org/hgnc/11912
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8402
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8136
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7077
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7691
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
reference allele: G
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-2489751-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2489751
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2489751
    reference: chr 1
allele count: 1
allele frequency: 8.567365192508696e-6
allele num: 116722
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.273-31A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-1040A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.179-31A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.179-31A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.439-31A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.23-31A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.179-31A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.179-31A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.179-31A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.179-31A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.438-31A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.287-31A>G
  variant of: http://identifiers.org/hgnc/11912
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8331
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8420
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7087
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9485
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8616
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff

1-2489754-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2489754
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2489754
    reference: chr 1
allele count: 1
allele frequency: 8.548323673727582e-6
allele num: 116982
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.179-28T>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.273-28T>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.438-28T>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.179-28T>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-1037T>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.179-28T>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.179-28T>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.287-28T>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.179-28T>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.439-28T>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.179-28T>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.23-28T>G
  variant of: http://identifiers.org/hgnc/11912
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8388
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9127
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9517
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7087
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP

1-2489756-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2489756
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2489756
    reference: chr 1
allele count: 9
allele frequency: 7.686001229760196e-5
allele num: 117096
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.179-26C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.23-26C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.179-26C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.179-26C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.179-26C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.438-26C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.439-26C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.179-26C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-1035C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.287-26C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.273-26C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.179-26C>T
  variant of: http://identifiers.org/hgnc/11912
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9570
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8474
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9312
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5138
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7090
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

1-2489757-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2489757
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2489757
    reference: chr 1
allele count: 1
allele frequency: 8.51397142711189e-6
allele num: 117454
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.438-25G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-1034G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.179-25G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.179-25G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.23-25G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.273-25G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.179-25G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.287-25G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.439-25G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.179-25G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.179-25G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.179-25G>A
  variant of: http://identifiers.org/hgnc/11912
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8444
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7090
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9597
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8520
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff

1-2489768-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2489768
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2489768
    reference: chr 1
allele count: 59
allele frequency: 4.967082554595814e-4
allele num: 118782
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.438-14T>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.179-14T>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.179-14T>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.179-14T>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.287-14T>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-1023T>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.273-14T>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.179-14T>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.23-14T>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.439-14T>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.179-14T>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.179-14T>C
  variant of: http://identifiers.org/hgnc/11912
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5146
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8892
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10475
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8467
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9740
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

1-2489771-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2489771
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2489771
    reference: chr 1
allele count: 1
allele frequency: 8.399267583866688e-6
allele num: 119058
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.179-11C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.179-11C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.23-11C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.439-11C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.287-11C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.179-11C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.179-11C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.273-11C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.179-11C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-1020C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.438-11C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.179-11C>T
  variant of: http://identifiers.org/hgnc/11912
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9795
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7108
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8990
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10594
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5148
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD

1-2489776-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2489776
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2489776
    reference: chr 1
allele count: 5
allele frequency: 4.185711654695531e-5
allele num: 119454
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.439-6C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.23-6C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.179-6C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.179-6C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.438-6C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.179-6C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.179-6C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.179-6C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-1015C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.273-6C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.287-6C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.179-6C>T
  variant of: http://identifiers.org/hgnc/11912
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10619
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9891
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8499
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.179-6C>T
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
reference allele: C
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

1-2489777-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2489777
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2489777
    reference: chr 1
allele count: 1
allele frequency: 8.358967500334358e-6
allele num: 119632
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.179-5G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.179-5G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.439-5G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.179-5G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.179-5G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.438-5G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.273-5G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.287-5G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-1014G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.179-5G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.179-5G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.23-5G>A
  variant of: http://identifiers.org/hgnc/11912
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10657
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9924
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.179-5G>A
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

1-2489787-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2489787
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2489787
    reference: chr 1
allele count: 1
allele frequency: 8.311032063961702e-6
allele num: 120322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.28C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.184C>T
  hgvsp: ENSP00000399533.1:p.Arg62Cys
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.184C>T
  hgvsp: ENSP00000347948.4:p.Arg62Cys
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.184C>T
  hgvsp: ENSP00000399292.2:p.Arg62Cys
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.444C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.278C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.184C>T
  hgvsp: ENSP00000415254.1:p.Arg62Cys
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.184C>T
  hgvsp: ENSP00000386859.1:p.Arg62Cys
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.184C>T
  hgvsp: ENSP00000411854.1:p.Arg62Cys
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-1004C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.292C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.443C>T
  variant of: http://identifiers.org/hgnc/11912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3515
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9390
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7138
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8517
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5156
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg62Cys
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/1-2489787-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2489787
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2489787
    reference: chr 1
allele count: 2
allele frequency: 1.66220641279234e-5
allele num: 120322
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.278C>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.184C>A
  hgvsp: ENSP00000386859.1:p.Arg62Ser
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.28C>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.184C>A
  hgvsp: ENSP00000415254.1:p.Arg62Ser
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.443C>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.184C>A
  hgvsp: ENSP00000399533.1:p.Arg62Ser
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.184C>A
  hgvsp: ENSP00000399292.2:p.Arg62Ser
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.444C>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.184C>A
  hgvsp: ENSP00000347948.4:p.Arg62Ser
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.292C>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-1004C>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.184C>A
  hgvsp: ENSP00000411854.1:p.Arg62Ser
  variant of: http://identifiers.org/hgnc/11912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3515
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10919
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5156
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9390
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8517
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7138
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg62Ser
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP

1-2489788-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2489788
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2489788
    reference: chr 1
allele count: 3
allele frequency: 2.491487417988539e-5
allele num: 120410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.29G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.185G>A
  hgvsp: ENSP00000415254.1:p.Arg62His
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.185G>A
  hgvsp: ENSP00000399292.2:p.Arg62His
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.185G>A
  hgvsp: ENSP00000386859.1:p.Arg62His
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-1003G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.279G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.293G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.445G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.185G>A
  hgvsp: ENSP00000411854.1:p.Arg62His
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.185G>A
  hgvsp: ENSP00000399533.1:p.Arg62His
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.444G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.185G>A
  hgvsp: ENSP00000347948.4:p.Arg62His
  variant of: http://identifiers.org/hgnc/11912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10058
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9399
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8518
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3515
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg62His
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP

1-2489804-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2489804
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2489804
    reference: chr 1
allele count: 9
allele frequency: 7.451194674879539e-5
allele num: 120786
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.309C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-987C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.201C>T
  hgvsp: ENST00000451778.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.201C>T
  hgvsp: ENST00000426449.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.201C>T
  hgvsp: ENST00000435221.2:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.461C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.460C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.201C>T
  hgvsp: ENST00000409119.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.295C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.201C>T
  hgvsp: ENST00000355716.4:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.201C>T
  hgvsp: ENST00000434817.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.45C>T
  variant of: http://identifiers.org/hgnc/11912
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10159
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5159
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9550
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys67Cys
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-2489807-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2489807
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2489807
    reference: chr 1
allele count: 3
allele frequency: 2.482498386376049e-5
allele num: 120846
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.204G>A
  hgvsp: ENST00000435221.2:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.298G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.464G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.48G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-984G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.463G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.312G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.204G>A
  hgvsp: ENST00000434817.1:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.204G>A
  hgvsp: ENST00000451778.1:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.204G>A
  hgvsp: ENST00000409119.1:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.204G>A
  hgvsp: ENST00000355716.4:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.204G>A
  hgvsp: ENST00000426449.1:c.204G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9567
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8538
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10169
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly68Gly
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

1-2489816-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2489816
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2489816
    reference: chr 1
allele count: 2
allele frequency: 1.653904040487571e-5
allele num: 120926
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.213G>T
  hgvsp: ENST00000355716.4:c.213G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.472G>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.307G>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.213G>T
  hgvsp: ENST00000426449.1:c.213G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.213G>T
  hgvsp: ENST00000434817.1:c.213G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.213G>T
  hgvsp: ENST00000451778.1:c.213G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.213G>T
  hgvsp: ENST00000435221.2:c.213G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.213G>T
  hgvsp: ENST00000409119.1:c.213G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-975G>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.57G>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.321G>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.473G>T
  variant of: http://identifiers.org/hgnc/11912
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10985
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9613
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5162
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr71Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ

1-2489837-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2489837
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2489837
    reference: chr 1
allele count: 2
allele frequency: 1.65218253312626e-5
allele num: 121052
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.234C>T
  hgvsp: ENST00000434817.1:c.234C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.493C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.234C>T
  hgvsp: ENST00000426449.1:c.234C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.78C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.234C>T
  hgvsp: ENST00000435221.2:c.234C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.234C>T
  hgvsp: ENST00000355716.4:c.234C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.234C>T
  hgvsp: ENST00000409119.1:c.234C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.234C>T
  hgvsp: ENST00000451778.1:c.234C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.328C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.342C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-954C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.494C>T
  variant of: http://identifiers.org/hgnc/11912
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys78Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS

1-2489838-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2489838
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2489838
    reference: chr 1
allele count: 6
allele frequency: 4.956793285197363e-5
allele num: 121046
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.235C>T
  hgvsp: ENSP00000399533.1:p.Pro79Ser
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.235C>T
  hgvsp: ENSP00000386859.1:p.Pro79Ser
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.494C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.495C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.235C>T
  hgvsp: ENSP00000411854.1:p.Pro79Ser
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.235C>T
  hgvsp: ENSP00000399292.2:p.Pro79Ser
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.235C>T
  hgvsp: ENSP00000415254.1:p.Pro79Ser
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.343C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.235C>T
  hgvsp: ENSP00000347948.4:p.Pro79Ser
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-953C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.79C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.329C>T
  variant of: http://identifiers.org/hgnc/11912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9660
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro79Ser
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

1-2489840-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2489840
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2489840
    reference: chr 1
allele count: 1
allele frequency: 8.261185645363822e-6
allele num: 121048
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.237T>A
  hgvsp: ENST00000355716.4:c.237T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.237T>A
  hgvsp: ENST00000435221.2:c.237T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.237T>A
  hgvsp: ENST00000426449.1:c.237T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.497T>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.496T>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.237T>A
  hgvsp: ENST00000409119.1:c.237T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.81T>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.237T>A
  hgvsp: ENST00000434817.1:c.237T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.237T>A
  hgvsp: ENST00000451778.1:c.237T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.331T>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-951T>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.345T>A
  variant of: http://identifiers.org/hgnc/11912
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10207
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9660
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro79Pro
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

1-2489842-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2489842
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2489842
    reference: chr 1
allele count: 1
allele frequency: 8.259684480052863e-6
allele num: 121070
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.239C>T
  hgvsp: ENSP00000411854.1:p.Pro80Leu
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-949C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.239C>T
  hgvsp: ENSP00000399533.1:p.Pro80Leu
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.239C>T
  hgvsp: ENSP00000399292.2:p.Pro80Leu
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.239C>T
  hgvsp: ENSP00000386859.1:p.Pro80Leu
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.239C>T
  hgvsp: ENSP00000347948.4:p.Pro80Leu
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.239C>T
  hgvsp: ENSP00000415254.1:p.Pro80Leu
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.333C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.499C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.498C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.347C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.83C>T
  variant of: http://identifiers.org/hgnc/11912
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11013
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9662
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro80Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

1-2489846-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2489846
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2489846
    reference: chr 1
allele count: 55
allele frequency: 4.542751420642262e-4
allele num: 121072
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.503C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.243C>T
  hgvsp: ENST00000355716.4:c.243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.351C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.502C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-945C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.243C>T
  hgvsp: ENST00000435221.2:c.243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.87C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.243C>T
  hgvsp: ENST00000434817.1:c.243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.243C>T
  hgvsp: ENST00000426449.1:c.243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.337C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.243C>T
  hgvsp: ENST00000451778.1:c.243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.243C>T
  hgvsp: ENST00000409119.1:c.243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5159
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8544
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10998
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3515
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gly81Gly
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ

1-2489849-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2489849
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2489849
    reference: chr 1
allele count: 1
allele frequency: 8.258729477057249e-6
allele num: 121084
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.246C>T
  hgvsp: ENST00000409119.1:c.246C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.340C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.90C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.246C>T
  hgvsp: ENST00000434817.1:c.246C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.354C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.246C>T
  hgvsp: ENST00000451778.1:c.246C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.506C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.246C>T
  hgvsp: ENST00000435221.2:c.246C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.246C>T
  hgvsp: ENST00000426449.1:c.246C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.246C>T
  hgvsp: ENST00000355716.4:c.246C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.505C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-942C>T
  variant of: http://identifiers.org/hgnc/11912
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10989
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10194
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr82Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff

1-2489912-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2489912
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2489912
    reference: chr 1
allele count: 1
allele frequency: 8.269109913008963e-6
allele num: 120932
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.403G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+5G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+5G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+5G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.568G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+5G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+5G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-879G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.564+5G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+5G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.153G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+5G>A
  variant of: http://identifiers.org/hgnc/11912
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9538
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10179
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5159
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.304+5G>A
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-2489915-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2489915
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2489915
    reference: chr 1
allele count: 1
allele frequency: 8.277049397430804e-6
allele num: 120816
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-876G>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+8G>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+8G>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+8G>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+8G>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+8G>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+8G>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.406G>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+8G>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.156G>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.571G>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.564+8G>T
  variant of: http://identifiers.org/hgnc/11912
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10575
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9406
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10178
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.304+8G>T
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-2489918-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2489918
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2489918
    reference: chr 1
allele count: 1
allele frequency: 8.278008642241022e-6
allele num: 120802
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.409A>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+11A>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+11A>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.574A>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+11A>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.564+11A>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-873A>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+11A>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+11A>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.159A>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+11A>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+11A>C
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8562
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3519
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10171
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7171
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

1-2489919-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2489919
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2489919
    reference: chr 1
allele count: 1
allele frequency: 8.280476292996373e-6
allele num: 120766
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+12G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+12G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+12G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.410G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+12G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.564+12G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+12G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.575G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.160G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+12G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+12G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-872G>C
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9381
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3517
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7173
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10527
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8581
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ

1-2489920-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2489920
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2489920
    reference: chr 1
allele count: 5
allele frequency: 4.14119829713926e-5
allele num: 120738
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.411C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+13C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.161C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.576C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+13C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+13C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+13C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+13C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-871C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+13C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.564+13C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+13C>T
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5161
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8578
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

1-2489926-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2489926
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2489926
    reference: chr 1
allele count: 5
allele frequency: 4.141061105497672e-5
allele num: 120742
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.167C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-865C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+19C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.582C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+19C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.417C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+19C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.564+19C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+19C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+19C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+19C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+19C>T
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9255
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8638
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5179
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD

http://identifiers.org/exac.variant/1-2489932-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2489932
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2489932
    reference: chr 1
allele count: 1
allele frequency: 8.284043275842073e-6
allele num: 120714
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.423A>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+25A>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+25A>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+25A>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-859A>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+25A>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+25A>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+25A>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.588A>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.173A>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+25A>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.564+25A>C
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 10182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8620
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10277
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9247
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3530
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

1-2489934-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2489934
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2489934
    reference: chr 1
allele count: 1
allele frequency: 8.283906027370025e-6
allele num: 120716
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+27C>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.590C>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+27C>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+27C>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.425C>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+27C>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.564+27C>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.175C>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+27C>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+27C>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+27C>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-857C>G
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10259
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD

1-2489938-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2489938
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2489938
    reference: chr 1
allele count: 7
allele frequency: 5.798542080848244e-5
allele num: 120720
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+31C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+31C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.179C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+31C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+31C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.564+31C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.429C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.594C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+31C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+31C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+31C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-853C>T
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9217
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3530
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10230
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

1-2489939-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2489939
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2489939
    reference: chr 1
allele count: 2
allele frequency: 1.657302905251993e-5
allele num: 120678
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+32G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.180G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+32G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.564+32G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+32G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-852G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+32G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+32G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.430G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.595G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+32G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+32G>A
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8618
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10140
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10207
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5193
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3530
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

1-2489942-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2489942
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2489942
    reference: chr 1
allele count: 3
allele frequency: 2.485913158766987e-5
allele num: 120680
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+35T>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+35T>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.564+35T>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+35T>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+35T>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.598T>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.183T>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+35T>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+35T>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.433T>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+35T>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-849T>C
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5193
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10152
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10136
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9174
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP

1-2489953-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2489953
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2489953
    reference: chr 1
allele count: 1
allele frequency: 8.293111741387604e-6
allele num: 120582
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+46G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.444G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+46G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+46G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-838G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+46G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.194G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.564+46G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.609G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+46G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+46G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+46G>C
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10118
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8611
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9078
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-2489954-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2489954
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2489954
    reference: chr 1
allele count: 1
allele frequency: 8.2936619835122e-6
allele num: 120574
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+47A>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+47A>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+47A>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+47A>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.195A>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.610A>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-837A>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+47A>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+47A>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+47A>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.445A>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.564+47A>T
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10103
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10226
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

1-2489957-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2489957
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2489957
    reference: chr 1
allele count: 5
allele frequency: 4.147518954161621e-5
allele num: 120554
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.198C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+50C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+50C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+50C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-834C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+50C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.448C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+50C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+50C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.613C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+50C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.564+50C>T
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5192
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10218
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8619
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10108
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP

1-2490273-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2490273
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2490273
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 1822
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.929C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+366C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+366C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+366C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.764C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+366C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.514C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.565-47C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+366C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-518C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+366C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+366C>T
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12183
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP

1-2490274-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2490274
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2490274
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 1830
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.565-46G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+367G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.765G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.515G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+367G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+367G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+367G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.930G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+367G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-517G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+367G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+367G>A
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12075
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

1-2490283-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2490283
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2490283
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 1866
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.565-37G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000482074
  gene symbol: TNFRSF14
  hgvsc: ENST00000482074.2:n.939G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+376G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+376G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+376G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+376G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.524G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+376G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+376G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+376G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-508G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.774G>C
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2310
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10985
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

1-2490330-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2490330
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2490330
    reference: chr 1
allele count: 1
allele frequency: 2.836074872376631e-4
allele num: 3526
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.571C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+423C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+423C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+423C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-461C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.575C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.821C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+423C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+423C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+423C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+423C>T
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4030
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4524
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4045
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

1-2490335-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2490335
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2490335
    reference: chr 1
allele count: 1
allele frequency: 2.331002331002331e-4
allele num: 4290
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+428G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.580G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+428G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+428G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.826G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-456G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+428G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.576G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+428G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+428G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+428G>A
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3870
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD

1-2490403-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2490403
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2490403
    reference: chr 1
allele count: 1
allele frequency: 8.718395815170009e-5
allele num: 11470
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+496C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-388C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+496C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.644C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.894C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+496C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+496C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.648C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+496C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+496C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+496C>T
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3982
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3000
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum

1-2490427-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2490427
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2490427
    reference: chr 1
allele count: 1
allele frequency: 8.710801393728223e-5
allele num: 11480
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.672T>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.918T>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+520T>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+520T>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+520T>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+520T>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-364T>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+520T>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.668T>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+520T>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+520T>A
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2900
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

1-2490429-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2490429
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2490429
    reference: chr 1
allele count: 2
allele frequency: 1.741250217656277e-4
allele num: 11486
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+522A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+522A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+522A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+522A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.670A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+522A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+522A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-362A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+522A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.920A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.674A>G
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2886
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: African
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

1-2490435-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2490435
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2490435
    reference: chr 1
allele count: 5
allele frequency: 4.369101712687871e-4
allele num: 11444
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+528C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+528C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+528C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.926C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-356C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.680C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+528C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+528C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.676C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+528C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+528C>T
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2834
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

1-2490436-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2490436
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2490436
    reference: chr 1
allele count: 1
allele frequency: 8.742787200559538e-5
allele num: 11438
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+529G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+529G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.927G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.681G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+529G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-355G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+529G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.677G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+529G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+529G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+529G>A
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3888
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD

1-2490444-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2490444
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2490444
    reference: chr 1
allele count: 1
allele frequency: 8.77963125548727e-5
allele num: 11390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+537T>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+537T>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+537T>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.689T>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+537T>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+537T>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.935T>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.685T>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+537T>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+537T>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-347T>A
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2804
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

1-2490449-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2490449
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2490449
    reference: chr 1
allele count: 1
allele frequency: 8.804366966015144e-5
allele num: 11358
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.690A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+542A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.940A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+542A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+542A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-342A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.694A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+542A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+542A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+542A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+542A>G
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2794
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3837
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2505
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

1-2490452-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2490452
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2490452
    reference: chr 1
allele count: 12
allele frequency: 1.060445387062566e-3
allele num: 11316
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.943C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+545C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.697C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+545C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+545C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+545C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+545C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.693C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+545C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+545C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-339C>T
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3815
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

1-2490453-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2490453
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2490453
    reference: chr 1
allele count: 1
allele frequency: 8.84016973125884e-5
allele num: 11312
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+546G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.944G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-338G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+546G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.694G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.698G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+546G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+546G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+546G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+546G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+546G>A
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2736
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3818
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

1-2490459-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2490459
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2490459
    reference: chr 1
allele count: 1
allele frequency: 8.862105636299185e-5
allele num: 11284
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+552C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.700C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-332C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+552C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.704C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+552C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+552C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.950C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+552C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+552C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+552C>T
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3793
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum

1-2490460-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2490460
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2490460
    reference: chr 1
allele count: 1
allele frequency: 8.865248226950355e-5
allele num: 11280
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.705G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.951G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.701G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+553G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+553G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+553G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+553G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+553G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+553G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+553G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-331G>C
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3796
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD

1-2490481-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2490481
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2490481
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 11196
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.726C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-310C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+574C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+574C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.972C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.722C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+574C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+574C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+574C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+574C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+574C>T
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3663
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

1-2490495-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2490495
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2490495
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 11106
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.740C>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+588C>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+588C>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+588C>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+588C>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-296C>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+588C>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+588C>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.986C>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.736C>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+588C>G
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3535
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2429
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

1-2490499-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2490499
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2490499
    reference: chr 1
allele count: 1
allele frequency: 9.017132551848512e-5
allele num: 11090
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.744G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+592G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+592G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+592G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.990G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-292G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+592G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+592G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.740G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+592G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+592G>C
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3493
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

1-2490513-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2490513
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2490513
    reference: chr 1
allele count: 18
allele frequency: 1.651679207193981e-3
allele num: 10898
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.1004C>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+606C>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+606C>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+606C>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+606C>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.758C>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.754C>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+606C>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+606C>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-278C>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+606C>G
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 1
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum

1-2490513-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2490513
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2490513
    reference: chr 1
allele count: 1
allele frequency: 9.175995595522114e-5
allele num: 10898
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.754C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+606C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+606C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.758C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+606C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.1004C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+606C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+606C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+606C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-278C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+606C>T
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

1-2490519-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2490519
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2490519
    reference: chr 1
allele count: 1
allele frequency: 9.233610341643582e-5
allele num: 10830
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.1010G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+612G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+612G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+612G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.764G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+612G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.760G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+612G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+612G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+612G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-272G>A
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2958
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2872
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

1-2490535-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2490535
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2490535
    reference: chr 1
allele count: 1
allele frequency: 9.503896597605019e-5
allele num: 10522
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+628C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-256C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+628C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+628C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+628C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.780C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+628C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+628C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+628C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.776C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.1026C>T
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

1-2490536-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2490536
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2490536
    reference: chr 1
allele count: 1
allele frequency: 9.458948164964057e-5
allele num: 10572
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+629G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+629G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+629G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-255G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+629G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+629G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.777G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+629G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.1027G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.781G>A
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+629G>A
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

1-2490549-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2490549
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2490549
    reference: chr 1
allele count: 2
allele frequency: 1.948558067030398e-4
allele num: 10264
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.1040C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+642C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+642C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.790C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+642C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.794C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+642C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+642C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-242C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+642C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+642C>T
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

1-2490563-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2490563
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2490563
    reference: chr 1
allele count: 1
allele frequency: 9.828975820719482e-5
allele num: 10174
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.1054G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.804G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+656G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+656G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+656G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+656G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.808G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-228G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+656G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+656G>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+656G>C
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3902
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum

1-2490564-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2490564
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2490564
    reference: chr 1
allele count: 1
allele frequency: 9.922603691208574e-5
allele num: 10078
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.304+657C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.304+657C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.304+657C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-227C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.1055C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.805C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.304+657C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.412+657C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  hgvsc: ENST00000442392.2:n.809C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.304+657C>T
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.304+657C>T
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

1-2490564-CAGGGCCTGAGCCTACAGGGAGGCACAGGGCA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2490564
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2490533
    reference: chr 1
allele count: 1
allele frequency: 9.922603691208574e-5
allele num: 10078
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000442392
  gene symbol: TNFRSF14
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: CAGGGCCTGAGCCTACAGGGAGGCACAGGGCA
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

1-2490598-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2490598
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2490597
    reference: chr 1
allele count: 1
allele frequency: 9.775171065493646e-5
allele num: 10230
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.305-661delG
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.305-661delG
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.305-661delG
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.305-661delG
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.1092delG
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.305-661delG
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.842delG
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-190delG
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.305-661delG
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.413-661delG
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3637
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3190
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: TG
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

1-2490609-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2490609
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2490609
    reference: chr 1
allele count: 64
allele frequency: 6.130268199233717e-3
allele num: 10440
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.305-653T>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.305-653T>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.305-653T>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.1100T>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-182T>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.305-653T>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.305-653T>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.305-653T>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.850T>C
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.413-653T>C
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 2.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 2.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 1
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

1-2490612-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2490612
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2490612
    reference: chr 1
allele count: 7
allele frequency: 6.678114863575654e-4
allele num: 10482
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000411854
  ensembl transcript: ENST00000426449
  gene symbol: TNFRSF14
  hgvsc: ENST00000426449.1:c.305-650A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000386859
  ensembl transcript: ENST00000409119
  gene symbol: TNFRSF14
  hgvsc: ENST00000409119.1:c.305-650A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000463471
  gene symbol: TNFRSF14
  hgvsc: ENST00000463471.2:n.1103A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399292
  ensembl transcript: ENST00000435221
  gene symbol: TNFRSF14
  hgvsc: ENST00000435221.2:c.305-650A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000415254
  ensembl transcript: ENST00000434817
  gene symbol: TNFRSF14
  hgvsc: ENST00000434817.1:c.305-650A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000496064
  gene symbol: TNFRSF14
  hgvsc: ENST00000496064.1:n.413-650A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000466750
  gene symbol: TNFRSF14
  hgvsc: ENST00000466750.1:n.853A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl transcript: ENST00000475523
  gene symbol: TNFRSF14
  hgvsc: ENST00000475523.1:n.71-179A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000347948
  ensembl transcript: ENST00000355716
  gene symbol: TNFRSF14
  hgvsc: ENST00000355716.4:c.305-650A>G
  variant of: http://identifiers.org/hgnc/11912
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157873
  ensembl protein: ENSP00000399533
  ensembl transcript: ENST00000451778
  gene symbol: TNFRSF14
  hgvsc: ENST00000451778.1:c.305-650A>G
  variant of: http://identifiers.org/hgnc/11912
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2433
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

1-2490618-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2490618
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 2490618
    reference: chr 1
allele count: 1
allele frequency: 9.435742592942064e-5
allele num: 10598
alternate allele: A
canonical: false
consequence: non coding transcript exon
filter: PASS
num of homozygotes: 0
reference allele: G

GenotypeDepth
all individuals: 427
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3748
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27064
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 182
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7162
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2216
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2226
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2372
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 944
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3505
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3563
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3831
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.192909119058678e-5
allele num: 64590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13808
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10158
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.336994624912363e-4
allele num: 8558
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.084e0

QD
type: SiteQuality
SIO_000300: 9.789999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

MQRankSum
type: SiteQuality
SIO_000300: 1.7e-1

DP
type: SiteQuality
SIO_000300: 2.111273e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQ
type: SiteQuality
SIO_000300: 5.946e1

FS
type: SiteQuality
SIO_000300: 1.831e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.189e0

GenotypeDepth
all individuals: 5131
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 234
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7522
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3764
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2374
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3521
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1206
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2237
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3903
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2230
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3571
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27085
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 882
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.546646869586736e-5
allele num: 64656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.19010641357492e-5
allele num: 13908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.11606e6

MQ
type: SiteQuality
SIO_000300: 5.836e1

QD
type: SiteQuality
SIO_000300: 8.140000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.19e0

VQSLOD
type: SiteQuality
SIO_000300: -2.161e0

MQRankSum
type: SiteQuality
SIO_000300: -4.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.186e0

GenotypeDepth
all individuals: 230
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3577
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 913
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2251
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3618
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2296
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8745
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27120
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3805
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4055
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2259
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14186
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.800078400627205e-5
allele num: 10204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.007e0

MQRankSum
type: SiteQuality
SIO_000300: 4.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.89e0

VQSLOD
type: SiteQuality
SIO_000300: -2.723e0

QD
type: SiteQuality
SIO_000300: 7.41e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.517e0

MQ
type: SiteQuality
SIO_000300: 5.867e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.16e-1

DP
type: SiteQuality
SIO_000300: 2.129732e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

GenotypeDepth
all individuals: 427
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2309
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2108
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3620
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4102
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27124
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3599
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9208
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3817
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10220
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.541022005794243e-5
allele num: 64892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.81e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.179e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.71e-1

DP
type: SiteQuality
SIO_000300: 2.136387e6

GenotypeDepth
all individuals: 230
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2267
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2317
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3610
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1992
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3624
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27134
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 432
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9281
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3832
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4105
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.331002331002331e-4
allele num: 8580
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.737921445950643e-4
allele num: 11508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.698703538324146e-5
allele num: 64946
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10224
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.934e0

VQSLOD
type: SiteQuality
SIO_000300: 2.4e0

DP
type: SiteQuality
SIO_000300: 2.141506e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.92e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.02e-1

QD
type: SiteQuality
SIO_000300: 1.499e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

FS
type: SiteQuality
SIO_000300: 7.81e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

GenotypeDepth
all individuals: 1236
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1913
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3649
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4192
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2274
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27150
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 83
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3633
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3855
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2334
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9605
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65054
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.689607229753215e-5
allele num: 11508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14618
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.145959e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.374e0

VQSLOD
type: SiteQuality
SIO_000300: -2.181e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.53e0

MQRankSum
type: SiteQuality
SIO_000300: -9.49e-1

MQ
type: SiteQuality
SIO_000300: 5.887e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e0

FS
type: SiteQuality
SIO_000300: 5.833e0

QD
type: SiteQuality
SIO_000300: 1.558e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

GenotypeDepth
all individuals: 7104
bin: 4.25e1
variant carriers: 9

GenotypeQuality
all individuals: 186
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27223
bin: 9.75e1
variant carriers: 59

GenotypeQuality
all individuals: 68
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1294
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2300
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4408
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3772
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3657
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3915
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2422
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10539
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15410
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.735809755250825e-4
allele num: 11522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65476
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.128668171557562e-3
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

African
type: Population
allele count: 56
allele frequency: 5.437949116333269e-3
allele num: 10298
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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SIO_000300: 8.500000000000001e-2

InbreedingCoeff
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SIO_000300: -8.0e-4

FS
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SIO_000300: 2.778e0

ReadPosRankSum
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SIO_000300: 6.4e-2

QD
type: SiteQuality
SIO_000300: 1.347e1

ClippingRankSum
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SIO_000300: 1.83e-1

DP
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SIO_000300: 2.168503e6

MQ
type: SiteQuality
SIO_000300: 5.97e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.07e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65600
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.430868167202572e-5
allele num: 15550
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: -4.951e0

ReadPosRankSum
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MQ
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ClippingRankSum
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MQRankSum
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SIO_000300: -2.39e-1

InbreedingCoeff
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SIO_000300: 1.0e-4

DP
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QD
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VQSLOD
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GenotypeDepth
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variant carriers: 2

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 6.086612495815454e-5
allele num: 65718
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.162250116225012e-4
allele num: 8604
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.976e1

FS
type: SiteQuality
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QD
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SIO_000300: 1.248e1

BaseQRankSum
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SIO_000300: -3.513e0

InbreedingCoeff
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SIO_000300: 3.0e-4

DP
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MQRankSum
type: SiteQuality
SIO_000300: 1.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.64e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.07e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.520218911523259e-5
allele num: 65780
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15892
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-2

FS
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SIO_000300: 3.602e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

QD
type: SiteQuality
SIO_000300: 1.175e1

MQRankSum
type: SiteQuality
SIO_000300: -1.27e-1

VQSLOD
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SIO_000300: 1.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
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SIO_000300: 4.05e0

DP
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SIO_000300: 2.182213e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16296
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66028
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.676795045480937e-5
allele num: 10334
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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MQRankSum
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SIO_000300: 2.68e-1

BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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FS
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QD
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InbreedingCoeff
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VQSLOD
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DP
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16296
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.029017992366875e-5
allele num: 66028
num of homozygotes: 0

Other
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num of homozygotes: 0

East Asian
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BaseQRankSum
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VQSLOD
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MQRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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QD
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MQ
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 1
allele frequency: 6.12294881214793e-5
allele num: 16332
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66060
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

Other
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Latino
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allele frequency: 1.730103806228374e-4
allele num: 11560
num of homozygotes: 0

African
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InbreedingCoeff
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QD
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BaseQRankSum
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ReadPosRankSum
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MQ
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MQRankSum
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VQSLOD
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FS
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ClippingRankSum
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DP
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
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East Asian
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Latino
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allele frequency: 2.594258042199931e-4
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.546030787805614e-5
allele num: 66260
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 6.070908207867897e-5
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.200814e6

FS
type: SiteQuality
SIO_000300: 1.412e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.369e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.77e0

VQSLOD
type: SiteQuality
SIO_000300: 1.75e0

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.178e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

GenotypeDepth
all individuals: 10978
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variant carriers: 0

GenotypeDepth
all individuals: 1242
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3721
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27302
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3986
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.52502337928746e-5
allele num: 66298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.2e-1

FS
type: SiteQuality
SIO_000300: 4.354e0

QD
type: SiteQuality
SIO_000300: 1.202e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.96e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.239e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.87e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.89e-1

DP
type: SiteQuality
SIO_000300: 2.202011e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

GenotypeDepth
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bin: 7.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3995
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.648784253184099e-5
allele num: 10364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.493e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 2.155e0

MQRankSum
type: SiteQuality
SIO_000300: 7.02e-1

DP
type: SiteQuality
SIO_000300: 2.203897e6

QD
type: SiteQuality
SIO_000300: 3.136e1

MQ
type: SiteQuality
SIO_000300: 5.986e1

GenotypeDepth
all individuals: 1243
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 668
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variant carriers: 0

GenotypeQuality
all individuals: 11466
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 11
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GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3725
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27310
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.63948332369385e-5
allele num: 10374
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.292e0

MQRankSum
type: SiteQuality
SIO_000300: 3.44e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.552e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.65e0

DP
type: SiteQuality
SIO_000300: 2.205793e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 5.33e-1

GenotypeDepth
all individuals: 92
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 234
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variant carriers: 0

GenotypeQuality
all individuals: 30
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 11443
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variant carriers: 0

GenotypeQuality
all individuals: 196
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variant carriers: 0

GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2621
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 3725
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
all individuals: 27313
bin: 9.75e1
variant carriers: 6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4721
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4131
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 6.942837306179125e-4
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
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SIO_000300: 1.88e-1

DP
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SIO_000300: 2.206481e6

BaseQRankSum
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SIO_000300: -1.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.81e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

VQSLOD
type: SiteQuality
SIO_000300: 5.73e0

QD
type: SiteQuality
SIO_000300: 1.287e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 11
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GenotypeQuality
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GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27312
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 2374
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505117399157134e-5
allele num: 66440
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.56e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.36e0

QD
type: SiteQuality
SIO_000300: 1.505e1

MQ
type: SiteQuality
SIO_000300: 5.975e1

FS
type: SiteQuality
SIO_000300: 2.635e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e0

DP
type: SiteQuality
SIO_000300: 2.206635e6

GenotypeDepth
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bin: 5.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 27313
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66462
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.5e-2

MQ
type: SiteQuality
SIO_000300: 5.982e1

VQSLOD
type: SiteQuality
SIO_000300: 1.98e-1

FS
type: SiteQuality
SIO_000300: 5.404e0

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -2.0e-4

ReadPosRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.805e0

DP
type: SiteQuality
SIO_000300: 2.20677e6

QD
type: SiteQuality
SIO_000300: 1.406e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 55

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 10
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 11472
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GenotypeQuality
all individuals: 29
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 40
allele frequency: 3.855050115651504e-3
allele num: 10376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.655130905808005e-4
allele num: 66460
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.593809441466367e-4
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
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SIO_000300: 2.212609e6

ReadPosRankSum
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VQSLOD
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QD
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MQRankSum
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SIO_000300: -6.8e-2

BaseQRankSum
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SIO_000300: -5.59e0

FS
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SIO_000300: 5.659999999999999e-1

ClippingRankSum
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SIO_000300: -6.29e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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South Asian
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MQRankSum
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SIO_000300: 8.92e-1

BaseQRankSum
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DP
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QD
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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FS
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MQ
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SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: -2.0e-4

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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African
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Other
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South Asian
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European (Finnish)
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num of homozygotes: 0

Latino
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num of homozygotes: 0

European (Non-Finnish)
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MQ
type: SiteQuality
SIO_000300: 5.944e1

FS
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DP
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MQRankSum
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VQSLOD
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QD
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InbreedingCoeff
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SIO_000300: -1.0e-4

BaseQRankSum
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SIO_000300: -3.75e0

ClippingRankSum
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SIO_000300: 1.9e0

ReadPosRankSum
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SIO_000300: -2.658e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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Other
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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BaseQRankSum
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SIO_000300: -1.382e0

MQ
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DP
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ClippingRankSum
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VQSLOD
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QD
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MQRankSum
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FS
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InbreedingCoeff
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SIO_000300: 1.1e-3

ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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African
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East Asian
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European (Finnish)
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European (Non-Finnish)
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allele num: 66250
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Latino
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FS
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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QD
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DP
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ClippingRankSum
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66224
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Latino
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African
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Other
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South Asian
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European (Finnish)
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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FS
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QD
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MQRankSum
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DP
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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African
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East Asian
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South Asian
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Latino
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European (Non-Finnish)
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ClippingRankSum
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QD
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InbreedingCoeff
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DP
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VQSLOD
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MQRankSum
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FS
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ReadPosRankSum
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BaseQRankSum
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
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num of homozygotes: 0

European (Finnish)
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South Asian
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Other
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African
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Latino
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European (Non-Finnish)
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ReadPosRankSum
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DP
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MQ
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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SIO_000300: -1.133e0

MQRankSum
type: SiteQuality
SIO_000300: 2.37e-1

FS
type: SiteQuality
SIO_000300: 6.843e0

QD
type: SiteQuality
SIO_000300: 7.22e0

GenotypeDepth
all individuals: 61
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4113
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 206
bin: 3.25e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27395
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 143
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510802235987309e-5
allele num: 66190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.021e1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

FS
type: SiteQuality
SIO_000300: 3.928e0

BaseQRankSum
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SIO_000300: -2.039e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.674e0

VQSLOD
type: SiteQuality
SIO_000300: -3.473e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.81e0

DP
type: SiteQuality
SIO_000300: 2.207436e6

GenotypeDepth
all individuals: 3530
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2573
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66208
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.20695e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.76e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.14e-1

FS
type: SiteQuality
SIO_000300: 3.051e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

QD
type: SiteQuality
SIO_000300: 1.281e1

VQSLOD
type: SiteQuality
SIO_000300: 8.66e-1

GenotypeDepth
all individuals: 5195
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 62
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4111
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2569
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66202
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.848719937936385e-4
allele num: 10312
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21153380179307e-4
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.99e0

MQRankSum
type: SiteQuality
SIO_000300: -5.83e-1

FS
type: SiteQuality
SIO_000300: 2.122e0

QD
type: SiteQuality
SIO_000300: 1.138e1

DP
type: SiteQuality
SIO_000300: 2.206627e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.79e-1

GenotypeDepth
all individuals: 238
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 190
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2570
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2377
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.022791850553171e-5
allele num: 66164
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQ
type: SiteQuality
SIO_000300: 5.966e1

VQSLOD
type: SiteQuality
SIO_000300: 3.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.79e-1

QD
type: SiteQuality
SIO_000300: 9.369999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

DP
type: SiteQuality
SIO_000300: 2.206148e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.99e-1

GenotypeDepth
all individuals: 62
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
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variant carriers: 0

GenotypeQuality
all individuals: 178
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2570
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10392
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.533639605875597e-5
allele num: 66172
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.12e-1

BaseQRankSum
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VQSLOD
type: SiteQuality
SIO_000300: 4.69e-1

MQ
type: SiteQuality
SIO_000300: 5.908e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

FS
type: SiteQuality
SIO_000300: 6.49e-1

QD
type: SiteQuality
SIO_000300: 1.3e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.32e-1

DP
type: SiteQuality
SIO_000300: 2.205431e6

GenotypeDepth
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512767759893501e-5
allele num: 66104
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.838e1

MQRankSum
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SIO_000300: 1.41e0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 8.199999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

DP
type: SiteQuality
SIO_000300: 2.204226e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.32e-1

GenotypeDepth
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4519
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3728
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51285930408472e-5
allele num: 66100
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.204244e6

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.914e1

ClippingRankSum
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SIO_000300: -6.2e-1

FS
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SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.0e-1

QD
type: SiteQuality
SIO_000300: 1.343e1

GenotypeDepth
all individuals: 1253
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Latino
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allele frequency: 8.652015919709292e-5
allele num: 11558
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European (Non-Finnish)
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allele frequency: 6.053451980992161e-5
allele num: 66078
num of homozygotes: 0

Other
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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ReadPosRankSum
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SIO_000300: -1.15e-1

InbreedingCoeff
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BaseQRankSum
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MQRankSum
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VQSLOD
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QD
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FS
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ClippingRankSum
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MQ
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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East Asian
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allele frequency: 0.0e0
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African
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MQRankSum
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SIO_000300: 0.0e0

VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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FS
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BaseQRankSum
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QD
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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VQSLOD
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QD
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ReadPosRankSum
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BaseQRankSum
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MQ
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MQRankSum
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FS
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InbreedingCoeff
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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Other
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DP
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InbreedingCoeff
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FS
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BaseQRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 1526
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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African
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Other
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BaseQRankSum
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QD
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ClippingRankSum
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MQ
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VQSLOD
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FS
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InbreedingCoeff
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DP
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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East Asian
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South Asian
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European (Non-Finnish)
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InbreedingCoeff
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MQ
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FS
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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VQSLOD
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DP
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Non-Finnish)
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Other
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Latino
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East Asian
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European (Finnish)
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VQSLOD
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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QD
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MQ
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FS
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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Latino
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East Asian
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European (Finnish)
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.856e-1

FS
type: SiteQuality
SIO_000300: 1.055e0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.65e-2

DP
type: SiteQuality
SIO_000300: 1.39563e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.648e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

QD
type: SiteQuality
SIO_000300: 9.68e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 3.168567807351077e-4
allele num: 3156
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.329787234042553e-4
allele num: 7520
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 400
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.25e-1

FS
type: SiteQuality
SIO_000300: 2.993e0

QD
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SIO_000300: 1.321e1

InbreedingCoeff
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SIO_000300: -3.78e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.37e0

VQSLOD
type: SiteQuality
SIO_000300: 5.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

DP
type: SiteQuality
SIO_000300: 1.39606e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

African
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allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.597444089456869e-3
allele num: 3130
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7520
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.55e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.39332e5

VQSLOD
type: SiteQuality
SIO_000300: 1.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.74e-1

FS
type: SiteQuality
SIO_000300: 8.927e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.74e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.76e-1

QD
type: SiteQuality
SIO_000300: 1.091e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 1.329080276448698e-4
allele num: 7524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3124
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.111e0

MQ
type: SiteQuality
SIO_000300: 5.886e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.75e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.27e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.39319e5

VQSLOD
type: SiteQuality
SIO_000300: -1.563e0

QD
type: SiteQuality
SIO_000300: 1.43e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 124
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3104
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.330494944119212e-4
allele num: 7516
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.173e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.77e-1

FS
type: SiteQuality
SIO_000300: 2.548e0

VQSLOD
type: SiteQuality
SIO_000300: 3.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

DP
type: SiteQuality
SIO_000300: 1.38854e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.84e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.95e-1

BaseQRankSum
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SIO_000300: -1.19e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.332267519317879e-4
allele num: 7506
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 362
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3090
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.74e-1

ReadPosRankSum
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QD
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InbreedingCoeff
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MQRankSum
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MQ
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DP
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FS
type: SiteQuality
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele num: 120
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 3.428571428571429e-2
allele num: 350
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Latino
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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ClippingRankSum
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FS
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MQ
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VQSLOD
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MQRankSum
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QD
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele num: 118
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East Asian
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Other
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European (Non-Finnish)
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South Asian
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African
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European (Finnish)
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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VQSLOD
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DP
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InbreedingCoeff
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ClippingRankSum
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FS
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MQRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Other
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Latino
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East Asian
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European (Non-Finnish)
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European (Finnish)
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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MQ
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MQRankSum
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QD
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FS
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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South Asian
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European (Finnish)
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Other
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African
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allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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VQSLOD
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FS
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQ
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InbreedingCoeff
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DP
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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South Asian
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European (Non-Finnish)
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Other
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African
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Latino
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MQ
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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DP
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MQRankSum
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FS
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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African
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allele frequency: 0.0e0
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DP
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BaseQRankSum
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MQ
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FS
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MQRankSum
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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QD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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African
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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FS
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MQ
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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DP
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QD
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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East Asian
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Other
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Latino
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European (Non-Finnish)
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South Asian
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InbreedingCoeff
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FS
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DP
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ReadPosRankSum
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VQSLOD
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MQ
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ClippingRankSum
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QD
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BaseQRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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European (Finnish)
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Latino
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Other
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European (Non-Finnish)
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African
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ReadPosRankSum
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FS
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DP
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QD
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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South Asian
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Latino
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African
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East Asian
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European (Finnish)
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DP
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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FS
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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African
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QD
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MQ
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DP
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InbreedingCoeff
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VQSLOD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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MQ
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Non-Finnish)
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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South Asian
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European (Finnish)
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African
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VQSLOD
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BaseQRankSum
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QD
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MQ
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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DP
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FS
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Latino
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South Asian
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European (Non-Finnish)
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DP
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MQRankSum
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InbreedingCoeff
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MQ
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FS
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QD
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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South Asian
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East Asian
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QD
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MQ
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DP
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VQSLOD
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African
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European (Finnish)
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VQSLOD
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MQ
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DP
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FS
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FS
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MQ
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DP
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.95e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.92e0

GenotypeQuality
all individuals: 316
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2567
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1517
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3225
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 9.75e1
variant carriers: 7

African
type: Population
allele count: 3
allele frequency: 7.462686567164179e-3
allele num: 402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 106
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 142
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.972651605231867e-4
allele num: 6728
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.811989100817438e-4
allele num: 2936
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.32e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.68e-1

DP
type: SiteQuality
SIO_000300: 1.18105e5

ClippingRankSum
type: SiteQuality
SIO_000300: 3.24e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.3e-2

FS
type: SiteQuality
SIO_000300: 9.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.97e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.46e-1

QD
type: SiteQuality
SIO_000300: 1.496e1