1-22079164-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079164
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079164
    reference: chr 1
allele count: 1
allele frequency: 9.180713157798098e-6
allele num: 108924
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.541-20T>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.541-20T>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.541-20T>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.541-20T>C
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3630
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3917
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2676
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13938
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD

1-22079169-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079169
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079169
    reference: chr 1
allele count: 1
allele frequency: 9.267153501130592e-6
allele num: 107908
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.541-25T>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.541-25T>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.541-25T>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.541-25T>C
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5983
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2675
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 543
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 506
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 233
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21428
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

1-22079173-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079173
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079173
    reference: chr 1
allele count: 8
allele frequency: 7.466865783087549e-5
allele num: 107140
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.541-29T>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.541-29T>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.541-29T>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.541-29T>C
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19920
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 3
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7822
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 904
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP

1-22079174-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079174
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079174
    reference: chr 1
allele count: 1
allele frequency: 9.363471226052922e-6
allele num: 106798
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.541-30A>G
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.541-30A>G
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.541-30A>G
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.541-30A>G
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 7195
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP

1-22079176-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079176
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079176
    reference: chr 1
allele count: 1
allele frequency: 9.404860431871191e-6
allele num: 106328
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.541-32T>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.541-32T>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.541-32T>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.541-32T>C
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6270
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6417
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2251
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14401
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1356
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum

1-22079177-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079177
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079177
    reference: chr 1
allele count: 11
allele frequency: 1.042100875364735e-4
allele num: 105556
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.541-33A>G
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.541-33A>G
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.541-33A>G
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.541-33A>G
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5744
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2683
  bin: 9.75e1
  variant carriers: 11
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
reference allele: T
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

1-22079184-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079184
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079184
    reference: chr 1
allele count: 2
allele frequency: 1.95579894386857e-5
allele num: 102260
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.541-40G>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.541-40G>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.541-40G>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.541-40G>A
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1915
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15317
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 7445
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD

1-22079196-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079196
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079196
    reference: chr 1
allele count: 1
allele frequency: 1.035282425045552e-5
allele num: 96592
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.541-52A>G
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.541-52A>G
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.541-52A>G
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.541-52A>G
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9655
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
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genotype quality: GenotypeQuality
  all individuals: 509
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-22079441-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079441
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079441
    reference: chr 1
allele count: 1
allele frequency: 1.503262078710802e-5
allele num: 66522
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.540+44C>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.540+44C>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.540+44C>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.540+44C>A
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15746
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6089
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6051
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4672
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6331
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3647
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1527
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15972
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6120
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5490
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5172
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3328
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

1-22079442-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079442
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079442
    reference: chr 1
allele count: 1
allele frequency: 1.496961168827281e-5
allele num: 66802
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.540+43C>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.540+43C>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.540+43C>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.540+43C>A
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6020
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15795
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2303
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3665
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP

1-22079446-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079446
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079446
    reference: chr 1
allele count: 1
allele frequency: 1.465845793022574e-5
allele num: 68220
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.540+39G>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.540+39G>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.540+39G>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.540+39G>C
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16437
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5716
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19561
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

1-22079454-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079454
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079453
    reference: chr 1
allele count: 23
allele frequency: 3.263614950194398e-4
allele num: 70474
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.540+30delA
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.540+30delA
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.540+30delA
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.540+30delA
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 24
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4331
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 220
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5918
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 293
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3303
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6302
  bin: 9.75e1
  variant carriers: 4
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: AT
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

1-22079457-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079457
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079457
    reference: chr 1
allele count: 149
allele frequency: 3.249018752725687e-3
allele num: 45860
alternate allele: A
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16891
  bin: 1.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 13969
  bin: 1.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8830
  bin: 7.5e0
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 6595
  bin: 2.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 7.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2079
  bin: 4.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1283
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2197
  bin: 2.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1772
  bin: 1.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 7.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1316
  bin: 5.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2030
  bin: 3.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1986
  bin: 1.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 3679
  bin: 9.75e1
  variant carriers: 88
genotype quality: GenotypeQuality
  all individuals: 1684
  bin: 5.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 3206
  bin: 7.5e0
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 2324
  bin: 3.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 4159
  bin: 2.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 26170
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1975
  bin: 4.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 8.25e1
  variant carriers: 4
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2300
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 390
  num of homozygotes: 0
population: African
  type: Population
  allele count: 6
  allele frequency: 1.477832512315271e-3
  allele num: 4060
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2648
  num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

1-22079457-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079457
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079458
    reference: chr 1
allele count: 3594
allele frequency: 7.836894897514174e-2
allele num: 45860
alternate allele: TA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.540+27dupT
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.540+27dupT
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.540+27dupT
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.540+27dupT
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6595
  bin: 2.25e1
  variant carriers: 462
genotype depth: GenotypeDepth
  all individuals: 8830
  bin: 7.5e0
  variant carriers: 399
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 5.75e1
  variant carriers: 210
genotype depth: GenotypeDepth
  all individuals: 16891
  bin: 1.25e1
  variant carriers: 1297
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.75e1
  variant carriers: 138
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.25e1
  variant carriers: 158
genotype depth: GenotypeDepth
  all individuals: 13969
  bin: 1.75e1
  variant carriers: 1058
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 3.25e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 4.25e1
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.75e1
  variant carriers: 172
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 3.75e1
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 9.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 8.25e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 6.25e1
  variant carriers: 204
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 2.75e1
  variant carriers: 184
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 4.75e1
  variant carriers: 139
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.25e1
  variant carriers: 175
genotype quality: GenotypeQuality
  all individuals: 1975
  bin: 4.75e1
  variant carriers: 343
genotype quality: GenotypeQuality
  all individuals: 2079
  bin: 4.25e1
  variant carriers: 433
genotype quality: GenotypeQuality
  all individuals: 1772
  bin: 1.75e1
  variant carriers: 352
genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 6.75e1
  variant carriers: 139
genotype quality: GenotypeQuality
  all individuals: 1283
  bin: 6.25e1
  variant carriers: 173
genotype quality: GenotypeQuality
  all individuals: 2030
  bin: 3.75e1
  variant carriers: 433
genotype quality: GenotypeQuality
  all individuals: 3206
  bin: 7.5e0
  variant carriers: 283
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 7.25e1
  variant carriers: 104
genotype quality: GenotypeQuality
  all individuals: 4159
  bin: 2.25e1
  variant carriers: 399
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 8.25e1
  variant carriers: 86
genotype quality: GenotypeQuality
  all individuals: 26170
  bin: 2.5e0
  variant carriers: 250
genotype quality: GenotypeQuality
  all individuals: 3679
  bin: 9.75e1
  variant carriers: 431
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 9.25e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 1316
  bin: 5.75e1
  variant carriers: 169
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 7.75e1
  variant carriers: 80
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 8.75e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 1986
  bin: 1.25e1
  variant carriers: 294
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

1-22079457-T-TAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079457
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079459
    reference: chr 1
allele count: 27
allele frequency: 5.887483645878761e-4
allele num: 45860
alternate allele: TAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.540+26_540+27dupTT
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.540+26_540+27dupTT
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.540+26_540+27dupTT
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.540+26_540+27dupTT
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8830
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6595
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 16891
  bin: 1.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13969
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1975
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2324
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 4159
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3206
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26170
  bin: 2.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 6.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2030
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1986
  bin: 1.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1772
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2197
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1283
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2079
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1684
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1316
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD

1-22079457-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079457
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079456
    reference: chr 1
allele count: 15862
allele frequency: 3.458787614478849e-1
allele num: 45860
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.540+27delT
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.540+27delT
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.540+27delT
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.540+27delT
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 3.75e1
  variant carriers: 353
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 4.75e1
  variant carriers: 375
genotype depth: GenotypeDepth
  all individuals: 16891
  bin: 1.25e1
  variant carriers: 4751
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 2.5e0
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 3.25e1
  variant carriers: 496
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 2.75e1
  variant carriers: 939
genotype depth: GenotypeDepth
  all individuals: 6595
  bin: 2.25e1
  variant carriers: 2391
genotype depth: GenotypeDepth
  all individuals: 13969
  bin: 1.75e1
  variant carriers: 4762
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 4.25e1
  variant carriers: 309
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 6.25e1
  variant carriers: 575
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 8830
  bin: 7.5e0
  variant carriers: 1241
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.75e1
  variant carriers: 510
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.25e1
  variant carriers: 464
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.75e1
  variant carriers: 333
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 5.75e1
  variant carriers: 528
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.25e1
  variant carriers: 452
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.75e1
  variant carriers: 166
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 9.75e1
  variant carriers: 215
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 8.25e1
  variant carriers: 234
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 8.75e1
  variant carriers: 442
genotype quality: GenotypeQuality
  all individuals: 1772
  bin: 1.75e1
  variant carriers: 661
genotype quality: GenotypeQuality
  all individuals: 3206
  bin: 7.5e0
  variant carriers: 505
genotype quality: GenotypeQuality
  all individuals: 1684
  bin: 5.25e1
  variant carriers: 1360
genotype quality: GenotypeQuality
  all individuals: 1986
  bin: 1.25e1
  variant carriers: 549
genotype quality: GenotypeQuality
  all individuals: 26170
  bin: 2.5e0
  variant carriers: 459
genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 6.75e1
  variant carriers: 814
genotype quality: GenotypeQuality
  all individuals: 3679
  bin: 9.75e1
  variant carriers: 3118
genotype quality: GenotypeQuality
  all individuals: 2324
  bin: 3.25e1
  variant carriers: 1276
genotype quality: GenotypeQuality
  all individuals: 2079
  bin: 4.25e1
  variant carriers: 1463
genotype quality: GenotypeQuality
  all individuals: 1316
  bin: 5.75e1
  variant carriers: 1094
genotype quality: GenotypeQuality
  all individuals: 4159
  bin: 2.25e1
  variant carriers: 677
genotype quality: GenotypeQuality
  all individuals: 1975
  bin: 4.75e1
  variant carriers: 1453
genotype quality: GenotypeQuality
  all individuals: 2197
  bin: 2.75e1
  variant carriers: 1034
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 9.25e1
  variant carriers: 400
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 8.25e1
  variant carriers: 402
genotype quality: GenotypeQuality
  all individuals: 2030
  bin: 3.75e1
  variant carriers: 1279
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: TA
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS

1-22079457-TAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079457
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079455
    reference: chr 1
allele count: 47
allele frequency: 1.024858264282599e-3
allele num: 45860
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.540+26_540+27delTT
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.540+26_540+27delTT
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.540+26_540+27delTT
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.540+26_540+27delTT
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6595
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8830
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 13969
  bin: 1.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 16891
  bin: 1.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2197
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1986
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1772
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2324
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1684
  bin: 5.25e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: TAA
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

1-22079458-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079458
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079458
    reference: chr 1
allele count: 4
allele frequency: 6.163328197226503e-4
allele num: 6490
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.540+27T>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.540+27T>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.540+27T>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.540+27T>A
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6696
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4425
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genotype depth: GenotypeDepth
  all individuals: 380
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genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1210
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
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genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 6
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

1-22079472-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079472
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079473
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 105386
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.540+12_540+13insC
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.540+12_540+13insC
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.540+12_540+13insC
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.540+12_540+13insC
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12593
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5361
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 716
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

1-22079475-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079475
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079475
    reference: chr 1
allele count: 1
allele frequency: 9.179701843284131e-6
allele num: 108936
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.540+10G>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.540+10G>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.540+10G>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.540+10G>A
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15777
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 447
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2624
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genotype quality: GenotypeQuality
  all individuals: 1611
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

1-22079482-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079482
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079482
    reference: chr 1
allele count: 1
allele frequency: 8.586491731208463e-6
allele num: 116462
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.540+3A>G
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.540+3A>G
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.540+3A>G
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.540+3A>G
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35281
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3390
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8895
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2657
  bin: 7.75e1
  variant carriers: 0
hgvs: c.540+3A>G
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum

1-22079488-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079488
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079488
    reference: chr 1
allele count: 6
allele frequency: 5.016890196996555e-5
allele num: 119596
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.537G>A
  hgvsp: ENST00000421625.2:c.537G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.537G>A
  hgvsp: ENST00000400301.1:c.537G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.537G>A
  hgvsp: ENST00000529637.1:c.537G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.537G>A
  hgvsp: ENST00000308271.9:c.537G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29278
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6923
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2034
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9444
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2629
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1814
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gln179Gln
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ

1-22079503-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079503
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079503
    reference: chr 1
allele count: 2
allele frequency: 1.654150263009892e-5
allele num: 120908
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.141G>A
  hgvsp: ENST00000527823.1:c.141G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.522G>A
  hgvsp: ENST00000308271.9:c.522G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.522G>A
  hgvsp: ENST00000421625.2:c.522G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.522G>A
  hgvsp: ENST00000529637.1:c.522G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.522G>A
  hgvsp: ENST00000400301.1:c.522G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18318
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7226
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38485
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1933
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9613
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu174Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

1-22079530-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079530
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079530
    reference: chr 1
allele count: 9
allele frequency: 7.418519922847392e-5
allele num: 121318
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.114A>G
  hgvsp: ENST00000532737.1:c.114A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.114A>G
  hgvsp: ENST00000527823.1:c.114A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.495A>G
  hgvsp: ENST00000308271.9:c.495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.495A>G
  hgvsp: ENST00000421625.2:c.495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.495A>G
  hgvsp: ENST00000529637.1:c.495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.495A>G
  hgvsp: ENST00000400301.1:c.495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7305
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29486
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18522
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9656
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2691
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 38719
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3060
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro165Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

1-22079544-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079544
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079544
    reference: chr 1
allele count: 1
allele frequency: 8.240762105679534e-6
allele num: 121348
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.481C>T
  hgvsp: ENSP00000383157.1:p.Arg161Ter
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.481C>T
  hgvsp: ENSP00000309262.9:p.Arg161Ter
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.100C>T
  hgvsp: ENSP00000434073.1:p.Arg34Ter
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.481C>T
  hgvsp: ENSP00000406256.2:p.Arg161Ter
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.100C>T
  hgvsp: ENSP00000435612.1:p.Arg34Ter
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.481C>T
  hgvsp: ENSP00000431949.1:p.Arg161Ter
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18556
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29465
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7322
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3062
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2688
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38746
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg161Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD

1-22079589-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079589
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079589
    reference: chr 1
allele count: 1
allele frequency: 8.254094030639197e-6
allele num: 121152
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.436G>C
  hgvsp: ENSP00000406256.2:p.Glu146Gln
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.436G>C
  hgvsp: ENSP00000383157.1:p.Glu146Gln
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.436G>C
  hgvsp: ENSP00000309262.9:p.Glu146Gln
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.55G>C
  hgvsp: ENSP00000435612.1:p.Glu19Gln
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.436G>C
  hgvsp: ENSP00000431949.1:p.Glu146Gln
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.55G>C
  hgvsp: ENSP00000434073.1:p.Glu19Gln
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29232
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1948
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2811
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu146Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD

1-22079590-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079590
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079590
    reference: chr 1
allele count: 2
allele frequency: 1.650982334489021e-5
allele num: 121140
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.435T>C
  hgvsp: ENST00000529637.1:c.435T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.54T>C
  hgvsp: ENST00000527823.1:c.54T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.435T>C
  hgvsp: ENST00000308271.9:c.435T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.435T>C
  hgvsp: ENST00000421625.2:c.435T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.435T>C
  hgvsp: ENST00000400301.1:c.435T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.54T>C
  hgvsp: ENST00000532737.1:c.54T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29219
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7302
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18507
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9628
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38477
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Cys145Cys
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

1-22079605-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079605
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079605
    reference: chr 1
allele count: 1
allele frequency: 8.286377195889957e-6
allele num: 120680
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.420G>A
  hgvsp: ENST00000308271.9:c.420G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.420G>A
  hgvsp: ENST00000400301.1:c.420G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.420G>A
  hgvsp: ENST00000421625.2:c.420G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.420G>A
  hgvsp: ENST00000529637.1:c.420G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.39G>A
  hgvsp: ENST00000532737.1:c.39G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.39G>A
  hgvsp: ENST00000527823.1:c.39G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28785
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18397
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1941
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9586
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2794
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2690
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu140Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

1-22079621-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079621
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079621
    reference: chr 1
allele count: 2
allele frequency: 1.666666666666667e-5
allele num: 120000
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.413-9T>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.413-9T>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.32-9T>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.413-9T>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.32-9T>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.413-9T>C
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28484
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18065
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3041
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 973
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9471
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

1-22079622-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079622
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079622
    reference: chr 1
allele count: 2
allele frequency: 1.666805567130594e-5
allele num: 119990
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.413-10G>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.32-10G>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.32-10G>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.413-10G>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.413-10G>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.413-10G>A
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7153
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28481
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18061
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2783
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

1-22079630-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079630
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079630
    reference: chr 1
allele count: 9
allele frequency: 7.51590867335861e-5
allele num: 119746
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.413-18A>G
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.32-18A>G
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.413-18A>G
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.413-18A>G
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.32-18A>G
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.413-18A>G
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2069
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28279
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7026
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2776
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1111
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3038
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2694
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

1-22079632-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079632
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079632
    reference: chr 1
allele count: 1
allele frequency: 8.355056480181806e-6
allele num: 119688
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.32-20C>G
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.32-20C>G
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.413-20C>G
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.413-20C>G
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.413-20C>G
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.413-20C>G
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28215
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
  all individuals: 463
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 283
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2689
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 1935
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1161
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 397
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD

1-22079640-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079640
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079640
    reference: chr 1
allele count: 1
allele frequency: 8.383072899201931e-6
allele num: 119288
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.413-28C>T
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.413-28C>T
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.32-28C>T
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.413-28C>T
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.32-28C>T
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.413-28C>T
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2714
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35417
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2691
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2996
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1257
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

1-22079640-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079640
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079640
    reference: chr 1
allele count: 1
allele frequency: 8.383072899201931e-6
allele num: 119288
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.413-28C>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.32-28C>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.413-28C>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.413-28C>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.32-28C>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.413-28C>A
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2714
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1257
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2996
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1927
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35417
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

1-22079640-GTTTT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079640
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079636
    reference: chr 1
allele count: 1
allele frequency: 8.383072899201931e-6
allele num: 119288
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.413-32_413-29delAAAA
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.32-32_32-29delAAAA
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.413-32_413-29delAAAA
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.413-32_413-29delAAAA
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.32-32_32-29delAAAA
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.413-32_413-29delAAAA
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1257
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2714
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: GTTTT
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

1-22079650-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079650
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079650
    reference: chr 1
allele count: 1
allele frequency: 8.401384548173538e-6
allele num: 119028
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.413-38C>T
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.413-38C>T
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.413-38C>T
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.413-38C>T
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.32-38C>T
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.32-38C>T
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16574
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27590
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6333
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2692
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2985
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2696
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34138
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8944
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

1-22079653-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079653
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079653
    reference: chr 1
allele count: 4
allele frequency: 3.365020610751241e-5
allele num: 118870
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.413-41G>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.32-41G>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.413-41G>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.32-41G>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.413-41G>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.413-41G>A
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6214
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1110
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2695
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2966
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1925
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33178
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

1-22079653-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079653
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079652
    reference: chr 1
allele count: 1
allele frequency: 8.412551526878102e-6
allele num: 118870
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.413-42delA
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.413-42delA
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.32-42delA
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.413-42delA
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.413-42delA
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.32-42delA
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6214
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27574
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 917
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8884
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2680
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1110
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1925
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1177
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33178
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: CT
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

1-22079656-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079656
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079656
    reference: chr 1
allele count: 1
allele frequency: 8.427581789681268e-6
allele num: 118658
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.413-44G>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.32-44G>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.413-44G>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.32-44G>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.413-44G>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.413-44G>A
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 15871
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2833
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6063
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31972
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2697
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1047
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

1-22079656-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079656
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079655
    reference: chr 1
allele count: 1
allele frequency: 8.427581789681268e-6
allele num: 118658
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.413-45delA
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.413-45delA
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.32-45delA
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.413-45delA
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.32-45delA
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.413-45delA
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6063
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2833
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15871
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31972
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2697
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 917
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1047
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: CT
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ

1-22079657-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22079657
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22079657
    reference: chr 1
allele count: 1
allele frequency: 8.425593583067927e-6
allele num: 118686
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.32-45A>T
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.413-45A>T
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.413-45A>T
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.413-45A>T
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.413-45A>T
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.32-45A>T
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6026
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27920
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15893
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8758
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2697
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1178
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32134
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1257
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1055
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: T
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

1-22082988-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22082988
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22082988
    reference: chr 1
allele count: 21
allele frequency: 2.6161052421766e-4
allele num: 80272
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.31+51C>T
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.412+51C>T
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.412+51C>T
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.412+51C>T
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.31+51C>T
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.412+51C>T
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 3981
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8630
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2675
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15252
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 15150
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 2.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1265
  bin: 2.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 4367
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17147
  bin: 2.5e0
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1268
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1100
  bin: 7.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1109
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

1-22082991-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22082991
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22082992
    reference: chr 1
allele count: 1
allele frequency: 8.351986102295126e-6
allele num: 119732
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.31+47dupT
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.412+47dupT
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.31+47dupT
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.412+47dupT
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.412+47dupT
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.412+47dupT
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15174
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27986
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38525
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2985
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2117
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 274
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8078
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/1-22083010-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22083010
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22083010
    reference: chr 1
allele count: 2
allele frequency: 1.647989452867502e-5
allele num: 121360
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.412+29T>G
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.412+29T>G
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.412+29T>G
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.31+29T>G
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.31+29T>G
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.412+29T>G
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15434
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28892
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4218
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3058
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1710
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2654
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

1-22083013-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22083013
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22083013
    reference: chr 1
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.412+26C>T
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.412+26C>T
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.31+26C>T
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.31+26C>T
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.412+26C>T
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.412+26C>T
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28900
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3055
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40879
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2654
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

1-22083022-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22083022
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22083022
    reference: chr 1
allele count: 2
allele frequency: 1.647636465490254e-5
allele num: 121386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.412+17G>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.412+17G>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.412+17G>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.31+17G>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.31+17G>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.412+17G>A
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15448
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7711
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8493
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2654
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3053
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40921
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-22083027-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22083027
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22083026
    reference: chr 1
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.412+11delA
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.412+11delA
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.31+11delA
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.412+11delA
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.31+11delA
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.412+11delA
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28973
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7695
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2211
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40937
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8492
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: CT
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD

1-22083035-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22083035
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22083035
    reference: chr 1
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.412+4G>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.412+4G>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.412+4G>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.31+4G>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.31+4G>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.412+4G>A
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29008
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7685
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2644
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40972
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3027
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2213
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
hgvs: c.412+4G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

1-22083042-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22083042
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22083042
    reference: chr 1
allele count: 5
allele frequency: 4.118819711023609e-5
allele num: 121394
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.409A>G
  hgvsp: ENSP00000309262.9:p.Lys137Glu
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.409A>G
  hgvsp: ENSP00000431949.1:p.Lys137Glu
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.28A>G
  hgvsp: ENSP00000434073.1:p.Lys10Glu
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.28A>G
  hgvsp: ENSP00000435612.1:p.Lys10Glu
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.409A>G
  hgvsp: ENSP00000383157.1:p.Lys137Glu
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.409A>G
  hgvsp: ENSP00000406256.2:p.Lys137Glu
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29027
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15456
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8490
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41004
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Lys137Glu
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

1-22083044-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22083044
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22083044
    reference: chr 1
allele count: 2
allele frequency: 1.647527884409444e-5
allele num: 121394
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.26A>G
  hgvsp: ENSP00000435612.1:p.Glu9Gly
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.407A>G
  hgvsp: ENSP00000406256.2:p.Glu136Gly
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.407A>G
  hgvsp: ENSP00000431949.1:p.Glu136Gly
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.26A>G
  hgvsp: ENSP00000434073.1:p.Glu9Gly
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.407A>G
  hgvsp: ENSP00000309262.9:p.Glu136Gly
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.407A>G
  hgvsp: ENSP00000383157.1:p.Glu136Gly
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29032
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7685
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15458
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2643
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8492
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40999
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu136Gly
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

1-22083049-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22083049
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22083049
    reference: chr 1
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.402A>G
  hgvsp: ENST00000529637.1:c.402A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.21A>G
  hgvsp: ENST00000527823.1:c.21A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.402A>G
  hgvsp: ENST00000421625.2:c.402A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.21A>G
  hgvsp: ENST00000532737.1:c.21A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.402A>G
  hgvsp: ENST00000400301.1:c.402A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.402A>G
  hgvsp: ENST00000308271.9:c.402A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29036
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15458
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8492
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40991
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gln134Gln
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

1-22083053-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22083053
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22083053
    reference: chr 1
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.17T>A
  hgvsp: ENSP00000435612.1:p.Ile6Asn
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.398T>A
  hgvsp: ENSP00000406256.2:p.Ile133Asn
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.398T>A
  hgvsp: ENSP00000383157.1:p.Ile133Asn
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.17T>A
  hgvsp: ENSP00000434073.1:p.Ile6Asn
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.398T>A
  hgvsp: ENSP00000309262.9:p.Ile133Asn
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.398T>A
  hgvsp: ENSP00000431949.1:p.Ile133Asn
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29042
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7677
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41011
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3014
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8487
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile133Asn
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

1-22083056-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22083056
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22083056
    reference: chr 1
allele count: 4
allele frequency: 3.295001482750667e-5
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.395G>A
  hgvsp: ENSP00000309262.9:p.Gly132Asp
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.395G>A
  hgvsp: ENSP00000383157.1:p.Gly132Asp
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.395G>A
  hgvsp: ENSP00000406256.2:p.Gly132Asp
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.395G>A
  hgvsp: ENSP00000431949.1:p.Gly132Asp
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.14G>A
  hgvsp: ENSP00000435612.1:p.Gly5Asp
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.14G>A
  hgvsp: ENSP00000434073.1:p.Gly5Asp
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15452
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7680
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29040
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2640
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8481
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3015
  bin: 9.75e1
  variant carriers: 4
hgvs: p.Gly132Asp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

1-22083057-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22083057
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22083057
    reference: chr 1
allele count: 6
allele frequency: 4.942420797706717e-5
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.13G>A
  hgvsp: ENSP00000435612.1:p.Gly5Ser
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.394G>A
  hgvsp: ENSP00000383157.1:p.Gly132Ser
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.394G>A
  hgvsp: ENSP00000406256.2:p.Gly132Ser
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.394G>A
  hgvsp: ENSP00000431949.1:p.Gly132Ser
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.394G>A
  hgvsp: ENSP00000309262.9:p.Gly132Ser
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.13G>A
  hgvsp: ENSP00000434073.1:p.Gly5Ser
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29040
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15458
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8482
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3012
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1708
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2638
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly132Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

1-22083058-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22083058
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22083058
    reference: chr 1
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.393C>T
  hgvsp: ENST00000529637.1:c.393C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.12C>T
  hgvsp: ENST00000532737.1:c.12C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.393C>T
  hgvsp: ENST00000400301.1:c.393C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.393C>T
  hgvsp: ENST00000308271.9:c.393C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.12C>T
  hgvsp: ENST00000527823.1:c.12C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.393C>T
  hgvsp: ENST00000421625.2:c.393C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15459
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8485
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2205
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3006
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 41032
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp131Asp
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

1-22083068-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22083068
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22083068
    reference: chr 1
allele count: 4
allele frequency: 3.29489291598023e-5
allele num: 121400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.383T>C
  hgvsp: ENSP00000431949.1:p.Met128Thr
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.383T>C
  hgvsp: ENSP00000383157.1:p.Met128Thr
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.2T>C
  hgvsp: ENSP00000434073.1:p.Met1?
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.383T>C
  hgvsp: ENSP00000309262.9:p.Met128Thr
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.383T>C
  hgvsp: ENSP00000406256.2:p.Met128Thr
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.2T>C
  hgvsp: ENSP00000435612.1:p.Met1?
  variant of: http://identifiers.org/hgnc/18533
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7686
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29026
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2639
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2199
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD

1-22083071-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22083071
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22083071
    reference: chr 1
allele count: 3
allele frequency: 2.471169686985173e-5
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.380A>G
  hgvsp: ENSP00000383157.1:p.Tyr127Cys
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.380A>G
  hgvsp: ENSP00000431949.1:p.Tyr127Cys
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.-2A>G
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.380A>G
  hgvsp: ENSP00000309262.9:p.Tyr127Cys
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.380A>G
  hgvsp: ENSP00000406256.2:p.Tyr127Cys
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.-2A>G
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 29019
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15450
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7686
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41009
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8478
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Tyr127Cys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum

1-22083079-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22083079
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22083079
    reference: chr 1
allele count: 3
allele frequency: 2.471251112063001e-5
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.372T>C
  hgvsp: ENST00000529637.1:c.372T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.372T>C
  hgvsp: ENST00000400301.1:c.372T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.-10T>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.372T>C
  hgvsp: ENST00000421625.2:c.372T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.372T>C
  hgvsp: ENST00000308271.9:c.372T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.-10T>C
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7695
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29013
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15441
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2998
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2638
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8473
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2196
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Cys124Cys
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

1-22083085-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22083085
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22083085
    reference: chr 1
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.366C>T
  hgvsp: ENST00000421625.2:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.366C>T
  hgvsp: ENST00000308271.9:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.366C>T
  hgvsp: ENST00000400301.1:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.-16C>T
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.-16C>T
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.366C>T
  hgvsp: ENST00000529637.1:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15438
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29013
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2186
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8472
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser122Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD

1-22083086-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22083086
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22083086
    reference: chr 1
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.365G>A
  hgvsp: ENSP00000309262.9:p.Ser122Asn
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.365G>A
  hgvsp: ENSP00000431949.1:p.Ser122Asn
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.-17G>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.365G>A
  hgvsp: ENSP00000383157.1:p.Ser122Asn
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.365G>A
  hgvsp: ENSP00000406256.2:p.Ser122Asn
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.-17G>A
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15438
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29012
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1704
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2994
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2188
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser122Asn
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

1-22083091-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22083091
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22083091
    reference: chr 1
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.-22T>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.-22T>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.360T>C
  hgvsp: ENST00000529637.1:c.360T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.360T>C
  hgvsp: ENST00000400301.1:c.360T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.360T>C
  hgvsp: ENST00000421625.2:c.360T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.360T>C
  hgvsp: ENST00000308271.9:c.360T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15435
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8465
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2993
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Cys120Cys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ

1-22083113-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22083113
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22083113
    reference: chr 1
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.338T>C
  hgvsp: ENSP00000309262.9:p.Leu113Pro
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.338T>C
  hgvsp: ENSP00000406256.2:p.Leu113Pro
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.338T>C
  hgvsp: ENSP00000383157.1:p.Leu113Pro
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.338T>C
  hgvsp: ENSP00000431949.1:p.Leu113Pro
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.-44T>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.-44T>C
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7740
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15420
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29021
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1702
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2628
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 877
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu113Pro
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

1-22083137-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22083137
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22083137
    reference: chr 1
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.314A>G
  hgvsp: ENSP00000406256.2:p.Gln105Arg
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.314A>G
  hgvsp: ENSP00000309262.9:p.Gln105Arg
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.314A>G
  hgvsp: ENSP00000431949.1:p.Gln105Arg
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.-68A>G
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.-68A>G
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.314A>G
  hgvsp: ENSP00000383157.1:p.Gln105Arg
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: missense
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4190
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7756
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15423
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2177
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2620
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41111
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1698
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gln105Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

1-22083137-TGAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22083137
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22083134
    reference: chr 1
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.311_313delTTC
  hgvsp: ENSP00000406256.2:p.Leu104del
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.311_313delTTC
  hgvsp: ENSP00000431949.1:p.Leu104del
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.311_313delTTC
  hgvsp: ENSP00000309262.9:p.Leu104del
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.311_313delTTC
  hgvsp: ENSP00000383157.1:p.Leu104del
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.-71_-69delTTC
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.-71_-69delTTC
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7756
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4190
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15423
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41111
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2177
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8464
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu104del
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: TGAA
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

1-22083145-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22083145
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22083145
    reference: chr 1
allele count: 3
allele frequency: 2.471454698235381e-5
allele num: 121386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.306A>T
  hgvsp: ENST00000421625.2:c.306A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.-76A>T
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.306A>T
  hgvsp: ENST00000400301.1:c.306A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.-76A>T
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.306A>T
  hgvsp: ENST00000308271.9:c.306A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.306A>T
  hgvsp: ENST00000529637.1:c.306A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7774
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4189
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15422
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1698
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2618
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8458
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr102Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

1-22083181-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22083181
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22083181
    reference: chr 1
allele count: 1
allele frequency: 8.249463784853985e-6
allele num: 121220
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.270C>A
  hgvsp: ENST00000400301.1:c.270C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.270C>A
  hgvsp: ENST00000308271.9:c.270C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.270C>A
  hgvsp: ENST00000421625.2:c.270C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.-112C>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.270C>A
  hgvsp: ENST00000529637.1:c.270C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.-112C>A
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28965
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1692
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8406
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40948
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly90Gly
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

1-22083192-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22083192
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22083192
    reference: chr 1
allele count: 1
allele frequency: 8.288300235387727e-6
allele num: 120652
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.259T>A
  hgvsp: ENSP00000406256.2:p.Ser87Thr
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.-123T>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.259T>A
  hgvsp: ENSP00000309262.9:p.Ser87Thr
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.259T>A
  hgvsp: ENSP00000383157.1:p.Ser87Thr
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.259T>A
  hgvsp: ENSP00000431949.1:p.Ser87Thr
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.-123T>A
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4089
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7491
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15200
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28741
  bin: 2.75e1
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genotype depth: GenotypeDepth
  all individuals: 722
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2965
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8284
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2598
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 40352
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser87Thr
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

1-22083193-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22083193
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22083193
    reference: chr 1
allele count: 6
allele frequency: 4.973062577704103e-5
allele num: 120650
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.258C>A
  hgvsp: ENSP00000383157.1:p.Asn86Lys
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.-124C>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.258C>A
  hgvsp: ENSP00000406256.2:p.Asn86Lys
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.258C>A
  hgvsp: ENSP00000431949.1:p.Asn86Lys
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.258C>A
  hgvsp: ENSP00000309262.9:p.Asn86Lys
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.-124C>A
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7496
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4091
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1683
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn86Lys
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

1-22083201-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22083201
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22083201
    reference: chr 1
allele count: 1
allele frequency: 8.365960579593749e-6
allele num: 119532
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.256-6T>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.-126-6T>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.-126-6T>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.256-6T>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.256-6T>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.256-6T>C
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3689
  bin: 3.75e1
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genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14431
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1645
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39446
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1941
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
hgvs: c.256-6T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-22083213-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22083213
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22083213
    reference: chr 1
allele count: 2
allele frequency: 1.701114229820532e-5
allele num: 117570
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.-126-18A>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.-126-18A>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.256-18A>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.256-18A>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.256-18A>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.256-18A>C
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12501
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4640
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2945
  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 1613
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 2352
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genotype quality: GenotypeQuality
  all individuals: 929
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35434
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1908
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

1-22083215-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22083215
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22083215
    reference: chr 1
allele count: 10
allele frequency: 8.531986417077624e-5
allele num: 117206
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.256-20T>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.256-20T>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.256-20T>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.-126-20T>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.-126-20T>C
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.256-20T>C
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11826
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1876
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 1.75e1
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genotype depth: GenotypeDepth
  all individuals: 25524
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3116
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 444
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1597
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 33883
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1343
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP

1-22083222-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22083222
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22083221
    reference: chr 1
allele count: 5
allele frequency: 4.298782584771993e-5
allele num: 116312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.256-28delT
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.-126-28delT
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.256-28delT
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.256-28delT
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.-126-28delT
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.256-28delT
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2954
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7026
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8463
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10377
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22643
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1936
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1567
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1450
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6783
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2632
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2938
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: TA
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff

1-22083233-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22083233
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22083233
    reference: chr 1
allele count: 2
allele frequency: 1.742919389978213e-5
allele num: 114750
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.256-38A>G
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.-126-38A>G
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.256-38A>G
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.-126-38A>G
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.256-38A>G
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.256-38A>G
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15493
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7482
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10728
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1805
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3072
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5474
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2126
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1753
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4791
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

1-22083235-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 22083235
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 22083235
    reference: chr 1
allele count: 1
allele frequency: 8.762552356250328e-6
allele num: 114122
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000406256
  ensembl transcript: ENST00000421625
  gene symbol: USP48
  hgvsc: ENST00000421625.2:c.256-40G>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000309262
  ensembl transcript: ENST00000308271
  gene symbol: USP48
  hgvsc: ENST00000308271.9:c.256-40G>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000435612
  ensembl transcript: ENST00000532737
  gene symbol: USP48
  hgvsc: ENST00000532737.1:c.-126-40G>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000434073
  ensembl transcript: ENST00000527823
  gene symbol: USP48
  hgvsc: ENST00000527823.1:c.-126-40G>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000431949
  ensembl transcript: ENST00000529637
  gene symbol: USP48
  hgvsc: ENST00000529637.1:c.256-40G>A
  variant of: http://identifiers.org/hgnc/18533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000090686
  ensembl protein: ENSP00000383157
  ensembl transcript: ENST00000400301
  gene symbol: USP48
  hgvsc: ENST00000400301.1:c.256-40G>A
  variant of: http://identifiers.org/hgnc/18533
canonical: true
consequence: intron
filter: PASS
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 3369
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7776
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6340
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9244
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.680220444922374e-5
allele num: 59516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14958
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

DP
type: SiteQuality
SIO_000300: 1.326275e6

FS
type: SiteQuality
SIO_000300: 4.683e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.73e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.508e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.743e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.64e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.26e1

GenotypeQuality
all individuals: 2624
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2926
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9182
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14820
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10140
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.298026998961578e-4
allele num: 7704
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58938
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.99e-1

DP
type: SiteQuality
SIO_000300: 1.260815e6

FS
type: SiteQuality
SIO_000300: 2.269e0

VQSLOD
type: SiteQuality
SIO_000300: 3.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.54e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.274e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.08e-1

GenotypeQuality
all individuals: 352
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2426
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14714
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.097453906935909e-4
allele num: 9112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7670
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6286
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10058
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.196908556186307e-4
allele num: 58484
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.93e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

MQRankSum
type: SiteQuality
SIO_000300: 2.46e-1

QD
type: SiteQuality
SIO_000300: 1.314e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

FS
type: SiteQuality
SIO_000300: 9.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e-1

DP
type: SiteQuality
SIO_000300: 1.208425e6

GenotypeQuality
all individuals: 1150
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4464
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14664
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.71556013038257e-5
allele num: 58290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6278
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9078
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10016
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.49e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.74e0

MQRankSum
type: SiteQuality
SIO_000300: -6.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.145e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.12e-1

DP
type: SiteQuality
SIO_000300: 1.194191e6

GenotypeQuality
all individuals: 7660
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2675
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9042
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6268
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9978
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58030
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.853070175438596e-5
allele num: 14592
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.44e-1

QD
type: SiteQuality
SIO_000300: 1.563e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.122e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.35e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.172203e6

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-2

GenotypeQuality
all individuals: 680
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.563585823488534e-4
allele num: 57560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7562
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.022244691607685e-4
allele num: 9890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8982
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.02e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

DP
type: SiteQuality
SIO_000300: 1.150011e6

MQRankSum
type: SiteQuality
SIO_000300: 3.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.43e0

QD
type: SiteQuality
SIO_000300: 1.4e1

GenotypeQuality
all individuals: 226
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2627
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 846
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6170
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13912
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8726
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.590793206219254e-5
allele num: 55698
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.219e0

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.3e-2

FS
type: SiteQuality
SIO_000300: 7.225e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.46e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.092701e6

QD
type: SiteQuality
SIO_000300: 1.121e1

GenotypeQuality
all individuals: 5475
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2262
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1048
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8920
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6032
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.42897970848814e-4
allele num: 6998
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13060
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.44e0

MQ
type: SiteQuality
SIO_000300: 5.896e1

QD
type: SiteQuality
SIO_000300: 9.31e0

DP
type: SiteQuality
SIO_000300: 1.061429e6

VQSLOD
type: SiteQuality
SIO_000300: -1.048e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -9.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.992e0

GenotypeQuality
all individuals: 327
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1250
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2235
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.934788988671715e-5
allele num: 34074
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3716
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6108
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12890
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.696e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.94459e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.78e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.276e0

MQRankSum
type: SiteQuality
SIO_000300: -1.171e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.04e-1

QD
type: SiteQuality
SIO_000300: 1.006e1

GenotypeQuality
all individuals: 396
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6332
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34226
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12918
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6114
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.646903123345686e-4
allele num: 3778
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4628
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.76e-1

QD
type: SiteQuality
SIO_000300: 8.15e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.088e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.5e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.04e1

VQSLOD
type: SiteQuality
SIO_000300: 4.64e-1

DP
type: SiteQuality
SIO_000300: 9.96306e5

GenotypeQuality
all individuals: 6332
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 770
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1368
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6216
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13018
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.851277372262774e-5
allele num: 35072
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4818
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.424e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

QD
type: SiteQuality
SIO_000300: 8.15e0

VQSLOD
type: SiteQuality
SIO_000300: -2.422e-1

DP
type: SiteQuality
SIO_000300: 1.008658e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.493e0

GenotypeQuality
all individuals: 5888
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1016
bin: 4.75e1
variant carriers: 4

GenotypeQuality
all individuals: 400
bin: 8.25e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4172
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5152
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.827311696264544e-4
allele num: 13064
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 3.841510262320272e-4
allele num: 36444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4676
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 6.299212598425197e-4
allele num: 6350
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.417e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.63e-1

FS
type: SiteQuality
SIO_000300: 1.641e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.31e-2

QD
type: SiteQuality
SIO_000300: 7.5e-1

DP
type: SiteQuality
SIO_000300: 1.064086e6

Latino
type: Population
allele count: 1
allele frequency: 2.955082742316785e-4
allele num: 3384
num of homozygotes: 0

South Asian
type: Population
allele count: 75
allele frequency: 7.727179064496188e-3
allele num: 9706
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 67
allele frequency: 2.866678076330652e-3
allele num: 23372
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.71e0

DP
type: SiteQuality
SIO_000300: 1.259388e6

MQ
type: SiteQuality
SIO_000300: 5.975e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.432e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.1e-2

QD
type: SiteQuality
SIO_000300: 1.83e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.01e-1

GenotypeQuality
all individuals: 2324
bin: 3.25e1
variant carriers: 448

GenotypeQuality
all individuals: 1684
bin: 5.25e1
variant carriers: 237

GenotypeQuality
all individuals: 2197
bin: 2.75e1
variant carriers: 394

East Asian
type: Population
allele count: 195
allele frequency: 7.36404833836858e-2
allele num: 2648
num of homozygotes: 0

Latino
type: Population
allele count: 249
allele frequency: 7.358156028368794e-2
allele num: 3384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 95
allele frequency: 4.130434782608695e-2
allele num: 2300
num of homozygotes: 0

African
type: Population
allele count: 298
allele frequency: 7.339901477832513e-2
allele num: 4060
num of homozygotes: 0

South Asian
type: Population
allele count: 1092
allele frequency: 1.125077271790645e-1
allele num: 9706
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1634
allele frequency: 6.991271607051172e-2
allele num: 23372
num of homozygotes: 0

Other
type: Population
allele count: 31
allele frequency: 7.948717948717948e-2
allele num: 390
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.71e0

QD
type: SiteQuality
SIO_000300: 1.83e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

DP
type: SiteQuality
SIO_000300: 1.259388e6

MQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.432e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.01e-1

GenotypeQuality
all individuals: 936
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3679
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2300
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 4.926108374384236e-4
allele num: 4060
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 1.182033096926714e-3
allele num: 3384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 6.417935991785042e-4
allele num: 23372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2648
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 6.18174325159695e-4
allele num: 9706
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.259388e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.432e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.71e0

MQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.01e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.83e0

GenotypeQuality
all individuals: 713
bin: 7.75e1
variant carriers: 604

GenotypeQuality
all individuals: 1283
bin: 6.25e1
variant carriers: 856

GenotypeQuality
all individuals: 936
bin: 7.25e1
variant carriers: 791

Other
type: Population
allele count: 130
allele frequency: 3.333333333333333e-1
allele num: 390
num of homozygotes: 0

Latino
type: Population
allele count: 1232
allele frequency: 3.640661938534279e-1
allele num: 3384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 640
allele frequency: 2.782608695652174e-1
allele num: 2300
num of homozygotes: 0

African
type: Population
allele count: 1391
allele frequency: 3.426108374384236e-1
allele num: 4060
num of homozygotes: 0

South Asian
type: Population
allele count: 3453
allele frequency: 3.557593241294045e-1
allele num: 9706
num of homozygotes: 0

East Asian
type: Population
allele count: 922
allele frequency: 3.481873111782477e-1
allele num: 2648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8094
allele frequency: 3.463118261167208e-1
allele num: 23372
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.975e1

MQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

DP
type: SiteQuality
SIO_000300: 1.259388e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.432e-1

QD
type: SiteQuality
SIO_000300: 1.83e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.1e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 3679
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1975
bin: 4.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2079
bin: 4.25e1
variant carriers: 1

South Asian
type: Population
allele count: 8
allele frequency: 8.2423243354626e-4
allele num: 9706
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 9.852216748768472e-4
allele num: 4060
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 1.773049645390071e-3
allele num: 3384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 27
allele frequency: 1.155228478521308e-3
allele num: 23372
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 7.552870090634441e-4
allele num: 2648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.83e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.71e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.432e-1

DP
type: SiteQuality
SIO_000300: 1.259388e6

MQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.01e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

GenotypeQuality
all individuals: 161
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 9.75e1
variant carriers: 4

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.549389567147614e-4
allele num: 3604
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 4.444444444444444e-3
allele num: 450
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.307e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

QD
type: SiteQuality
SIO_000300: 5.02e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.08e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.75e0

DP
type: SiteQuality
SIO_000300: 5.71195e5

GenotypeQuality
all individuals: 312
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 430
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7174
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6100
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9062
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56766
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.94e-1

MQ
type: SiteQuality
SIO_000300: 6.217e1

FS
type: SiteQuality
SIO_000300: 4.043e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.9e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.9e-2

QD
type: SiteQuality
SIO_000300: 3.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-3

DP
type: SiteQuality
SIO_000300: 1.316219e6

GenotypeQuality
all individuals: 503
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3072
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.344086021505376e-4
allele num: 7440
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10210
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15838
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58968
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.47e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.95e0

QD
type: SiteQuality
SIO_000300: 1.586e1

DP
type: SiteQuality
SIO_000300: 1.389917e6

MQRankSum
type: SiteQuality
SIO_000300: 1.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.58e0

GenotypeQuality
all individuals: 2571
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 157
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2486
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8082
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.568922777620886e-5
allele num: 63738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11062
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9940
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.55e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

DP
type: SiteQuality
SIO_000300: 1.564813e6

QD
type: SiteQuality
SIO_000300: 1.453e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.19e0

MQRankSum
type: SiteQuality
SIO_000300: -2.9e-1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2655
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variant carriers: 0

GenotypeQuality
all individuals: 2878
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 6
allele frequency: 5.885815185403178e-4
allele num: 10194
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.245e0

DP
type: SiteQuality
SIO_000300: 1.616487e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

FS
type: SiteQuality
SIO_000300: 6.306e0

VQSLOD
type: SiteQuality
SIO_000300: 6.28e-1

QD
type: SiteQuality
SIO_000300: 1.233e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2670
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3035
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 2791
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.688044952528579e-5
allele num: 10322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.065752759917505e-5
allele num: 16486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.615e1

MQRankSum
type: SiteQuality
SIO_000300: 3.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.12e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.41e-1

FS
type: SiteQuality
SIO_000300: 2.157e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.724e0

VQSLOD
type: SiteQuality
SIO_000300: -2.633e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.63e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

DP
type: SiteQuality
SIO_000300: 1.637155e6

GenotypeQuality
all individuals: 922
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1953
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variant carriers: 0

GenotypeQuality
all individuals: 774
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 2817
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 6.912044237083118e-4
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.643509e6

MQ
type: SiteQuality
SIO_000300: 5.979e1

MQRankSum
type: SiteQuality
SIO_000300: 7.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.12e0

FS
type: SiteQuality
SIO_000300: 1.644e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.374e1

GenotypeQuality
all individuals: 2821
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9654
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
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variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1951
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.85e0

VQSLOD
type: SiteQuality
SIO_000300: -1.282e-1

DP
type: SiteQuality
SIO_000300: 1.643979e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.44e0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38486
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 9628
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3051
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.688044952528579e-5
allele num: 10322
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.03e0

DP
type: SiteQuality
SIO_000300: 1.640857e6

MQRankSum
type: SiteQuality
SIO_000300: 6.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.425e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.47e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

FS
type: SiteQuality
SIO_000300: 3.97e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.409999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.086e1

GenotypeQuality
all individuals: 2690
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 259
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 776
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variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1948
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variant carriers: 0

GenotypeQuality
all individuals: 923
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variant carriers: 0

GenotypeQuality
all individuals: 3049
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2811
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728907330567082e-4
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.38e0

DP
type: SiteQuality
SIO_000300: 1.640589e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.405e0

FS
type: SiteQuality
SIO_000300: 3.592e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e0

QD
type: SiteQuality
SIO_000300: 1.224e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.24e0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 922
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variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 37942
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504845602841149e-5
allele num: 66452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10102
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.982e0

QD
type: SiteQuality
SIO_000300: 9.32e0

VQSLOD
type: SiteQuality
SIO_000300: 8.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

DP
type: SiteQuality
SIO_000300: 1.633219e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.8e-1

MQ
type: SiteQuality
SIO_000300: 5.91e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.7e-1

GenotypeQuality
all individuals: 1939
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variant carriers: 0

GenotypeQuality
all individuals: 45
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GenotypeQuality
all individuals: 2782
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variant carriers: 0

GenotypeQuality
all individuals: 37238
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GenotypeQuality
all individuals: 2692
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variant carriers: 2

GenotypeQuality
all individuals: 99
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GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.171234481143125e-4
allele num: 8538
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.019367991845056e-4
allele num: 9810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66182
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.21e0

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

FS
type: SiteQuality
SIO_000300: 2.357e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.41e-1

DP
type: SiteQuality
SIO_000300: 1.619993e6

VQSLOD
type: SiteQuality
SIO_000300: 3.12e0

QD
type: SiteQuality
SIO_000300: 1.345e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.978e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3040
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1938
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9469
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2690
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.022243713733075e-5
allele num: 66176
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.9e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-1

MQ
type: SiteQuality
SIO_000300: 5.855e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.942e0

VQSLOD
type: SiteQuality
SIO_000300: -9.853e-1

DP
type: SiteQuality
SIO_000300: 1.619932e6

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1937
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variant carriers: 0

GenotypeQuality
all individuals: 36686
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.055921052631579e-4
allele num: 9728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.827040194884288e-4
allele num: 16420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.052352852171281e-5
allele num: 66090
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.91e0

QD
type: SiteQuality
SIO_000300: 1.539e1

FS
type: SiteQuality
SIO_000300: 1.442e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.29e0

DP
type: SiteQuality
SIO_000300: 1.611216e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.06e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

GenotypeQuality
all individuals: 288
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9417
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 48
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variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9712
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51372952680815e-5
allele num: 66062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

FS
type: SiteQuality
SIO_000300: 8.987e0

DP
type: SiteQuality
SIO_000300: 1.608099e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.26e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.112e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.3e-1

QD
type: SiteQuality
SIO_000300: 1.449e1

MQ
type: SiteQuality
SIO_000300: 5.963e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -9.478e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1927
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variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 183
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variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.102770657878677e-5
allele num: 16386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65858
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.047e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.570000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.49e0

FS
type: SiteQuality
SIO_000300: 1.811e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

MQ
type: SiteQuality
SIO_000300: 5.757e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.9e-1

QD
type: SiteQuality
SIO_000300: 1.697e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.83e-1

DP
type: SiteQuality
SIO_000300: 1.591451e6

GenotypeQuality
all individuals: 494
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2691
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 359
bin: 7.5e0
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.102770657878677e-5
allele num: 16386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9612
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.591451e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.9e-1

QD
type: SiteQuality
SIO_000300: 1.697e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.570000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.047e0

FS
type: SiteQuality
SIO_000300: 1.811e0

MQ
type: SiteQuality
SIO_000300: 5.757e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.83e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.49e0

GenotypeQuality
all individuals: 1927
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 35417
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518418415378542e-5
allele num: 65858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.811e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.9e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.047e0

QD
type: SiteQuality
SIO_000300: 1.697e1

VQSLOD
type: SiteQuality
SIO_000300: 1.49e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.83e-1

MQ
type: SiteQuality
SIO_000300: 5.757e1

DP
type: SiteQuality
SIO_000300: 1.591451e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.570000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 128
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variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521977352976988e-5
allele num: 65704
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

DP
type: SiteQuality
SIO_000300: 1.574993e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.61e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.023e0

MQRankSum
type: SiteQuality
SIO_000300: -6.51e-1

MQ
type: SiteQuality
SIO_000300: 5.922e1

QD
type: SiteQuality
SIO_000300: 1.572e1

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.61e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 917
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.094959468519534e-5
allele num: 65628
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16300
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

MQ
type: SiteQuality
SIO_000300: 5.981e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-1

FS
type: SiteQuality
SIO_000300: 8.080000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.35e0

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.568839e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 771
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523739867129884e-5
allele num: 65628
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.419e1

MQRankSum
type: SiteQuality
SIO_000300: -4.2e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

VQSLOD
type: SiteQuality
SIO_000300: 3.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.997e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

FS
type: SiteQuality
SIO_000300: 8.080000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.568839e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 731
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variant carriers: 0

GenotypeQuality
all individuals: 8747
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526810797605961e-5
allele num: 65496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9502
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.064e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.52e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.855e0

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

DP
type: SiteQuality
SIO_000300: 1.564655e6

MQRankSum
type: SiteQuality
SIO_000300: 2.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2960
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1928
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526810797605961e-5
allele num: 65496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

QD
type: SiteQuality
SIO_000300: 1.064e1

MQRankSum
type: SiteQuality
SIO_000300: 2.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

FS
type: SiteQuality
SIO_000300: 8.855e0

DP
type: SiteQuality
SIO_000300: 1.564655e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1932
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1173
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2961
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2681
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.144015728680265e-5
allele num: 16276
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.564318e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.72e-1

QD
type: SiteQuality
SIO_000300: 1.659e1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -6.067e-1

GenotypeQuality
all individuals: 1425
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 20680
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1129
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1146
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1500
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1208
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.209456473707468e-4
allele num: 4526
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 1.101591187270502e-3
allele num: 8170
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.65764447695684e-4
allele num: 5468
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.705320600272851e-4
allele num: 5864
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.243162605668821e-4
allele num: 8044
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.469723691945914e-4
allele num: 47628
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.331e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.06e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.232e0

QD
type: SiteQuality
SIO_000300: 1.3e-1

FS
type: SiteQuality
SIO_000300: 4.6652e1

MQ
type: SiteQuality
SIO_000300: 5.655e1

MQRankSum
type: SiteQuality
SIO_000300: -7.19e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.025e1

DP
type: SiteQuality
SIO_000300: 3.772312e6

GenotypeQuality
all individuals: 323
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2563
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 866
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1655
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.150061500615006e-5
allele num: 16260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9966
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.879999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQ
type: SiteQuality
SIO_000300: 5.678e1

FS
type: SiteQuality
SIO_000300: 2.621e0

DP
type: SiteQuality
SIO_000300: 1.880783e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-1

QD
type: SiteQuality
SIO_000300: 9.109999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.419999999999999e-1

GenotypeQuality
all individuals: 8485
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40866
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2212
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 694
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.598e0

FS
type: SiteQuality
SIO_000300: 3.99e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.839e1

DP
type: SiteQuality
SIO_000300: 1.864329e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

QD
type: SiteQuality
SIO_000300: 1.295e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.77e-1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 887
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8485
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 2209
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1710
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.565e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.057e0

FS
type: SiteQuality
SIO_000300: 1.0394e1

MQ
type: SiteQuality
SIO_000300: 5.853e1

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.27e-1

QD
type: SiteQuality
SIO_000300: 1.011e1

DP
type: SiteQuality
SIO_000300: 1.864265e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2210
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 694
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 888
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1710
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.949e0

MQRankSum
type: SiteQuality
SIO_000300: 4.66e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.101e-1

DP
type: SiteQuality
SIO_000300: 1.86392e6

MQ
type: SiteQuality
SIO_000300: 5.811e1

FS
type: SiteQuality
SIO_000300: 5.81e-1

QD
type: SiteQuality
SIO_000300: 1.023e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.0e-2

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2660
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variant carriers: 0

GenotypeQuality
all individuals: 3045
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 1715
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.43e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQRankSum
type: SiteQuality
SIO_000300: 5.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.861838e6

QD
type: SiteQuality
SIO_000300: 1.301e1

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.28e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.29e0

QD
type: SiteQuality
SIO_000300: 1.122e1

MQ
type: SiteQuality
SIO_000300: 5.824e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.292e0

DP
type: SiteQuality
SIO_000300: 1.858818e6

MQRankSum
type: SiteQuality
SIO_000300: -1.029e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.88e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 2643
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2209
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3022
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 689
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.49288176232579e-5
allele num: 66730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.64e-1

MQ
type: SiteQuality
SIO_000300: 5.804e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.858833e6

MQRankSum
type: SiteQuality
SIO_000300: 3.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.63e0

VQSLOD
type: SiteQuality
SIO_000300: -2.497e0

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.296e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 3017
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variant carriers: 2

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.828e1

MQRankSum
type: SiteQuality
SIO_000300: 2.59e0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.76e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.857952e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.96e0

QD
type: SiteQuality
SIO_000300: 1.358e1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2207
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3016
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2640
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.857527e6

MQ
type: SiteQuality
SIO_000300: 5.784e1

QD
type: SiteQuality
SIO_000300: 1.397e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e-1

FS
type: SiteQuality
SIO_000300: 3.815e0

MQRankSum
type: SiteQuality
SIO_000300: -3.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.392e0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2206
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variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.102e0

MQ
type: SiteQuality
SIO_000300: 5.869e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

VQSLOD
type: SiteQuality
SIO_000300: -1.093e-1

QD
type: SiteQuality
SIO_000300: 1.203e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.77e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.03e-1

DP
type: SiteQuality
SIO_000300: 1.857613e6

GenotypeQuality
all individuals: 41017
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 885
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1708
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2205
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.622140050843541e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.003e0

MQ
type: SiteQuality
SIO_000300: 5.81e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.43e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.254e0

QD
type: SiteQuality
SIO_000300: 1.068e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.16e-1

DP
type: SiteQuality
SIO_000300: 1.857914e6

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2205
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 885
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.777675063554426e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.95e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.25e0

FS
type: SiteQuality
SIO_000300: 5.19e-1

MQ
type: SiteQuality
SIO_000300: 5.816e1

DP
type: SiteQuality
SIO_000300: 1.85789e6

VQSLOD
type: SiteQuality
SIO_000300: -2.478e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 7.32e-1

QD
type: SiteQuality
SIO_000300: 1.189e1

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2638
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1707
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 885
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.771e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.01e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.21e-1

FS
type: SiteQuality
SIO_000300: 1.736e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.262e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e-1

QD
type: SiteQuality
SIO_000300: 1.353e1

DP
type: SiteQuality
SIO_000300: 1.856611e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.473e0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8480
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variant carriers: 0

GenotypeQuality
all individuals: 1706
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3007
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 21
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.843936190659235e-4
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.591e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.825e1

MQRankSum
type: SiteQuality
SIO_000300: 5.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.89e-1

DP
type: SiteQuality
SIO_000300: 1.856623e6

FS
type: SiteQuality
SIO_000300: 5.23e-1

QD
type: SiteQuality
SIO_000300: 1.257e1

GenotypeQuality
all individuals: 884
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2639
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1708
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2197
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variant carriers: 0

GenotypeQuality
all individuals: 3003
bin: 9.75e1
variant carriers: 3

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.466605038132656e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.704e0

QD
type: SiteQuality
SIO_000300: 1.162e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.099e0

MQRankSum
type: SiteQuality
SIO_000300: 8.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.111e0

DP
type: SiteQuality
SIO_000300: 1.855557e6

MQ
type: SiteQuality
SIO_000300: 5.8e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.18e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 885
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variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.467406380027739e-4
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.179e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e0

MQ
type: SiteQuality
SIO_000300: 5.808e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.32e0

DP
type: SiteQuality
SIO_000300: 1.855045e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -7.69e-1

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.443e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.38e0

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.909e1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.46e-1

DP
type: SiteQuality
SIO_000300: 1.8543e6

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 683
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variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.422e1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 8.51e-1

FS
type: SiteQuality
SIO_000300: 3.995e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.414e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-1

MQ
type: SiteQuality
SIO_000300: 5.785e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e0

GenotypeQuality
all individuals: 1703
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.853972e6

VQSLOD
type: SiteQuality
SIO_000300: -1.567e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

FS
type: SiteQuality
SIO_000300: 2.626e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.4e0

QD
type: SiteQuality
SIO_000300: 1.584e1

MQ
type: SiteQuality
SIO_000300: 5.786e1

GenotypeQuality
all individuals: 41070
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.326e0

VQSLOD
type: SiteQuality
SIO_000300: -1.658e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.0e-1

FS
type: SiteQuality
SIO_000300: 3.049e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.731e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.71e-1

DP
type: SiteQuality
SIO_000300: 1.853298e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.663e1

MQ
type: SiteQuality
SIO_000300: 5.797e1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 876
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.824e1

DP
type: SiteQuality
SIO_000300: 1.853312e6

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

QD
type: SiteQuality
SIO_000300: 7.04e0

FS
type: SiteQuality
SIO_000300: 7.459e0

MQRankSum
type: SiteQuality
SIO_000300: 2.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 9.06e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1698
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variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQRankSum
type: SiteQuality
SIO_000300: 2.97e-1

FS
type: SiteQuality
SIO_000300: 7.459e0

MQ
type: SiteQuality
SIO_000300: 5.824e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

QD
type: SiteQuality
SIO_000300: 7.04e0

DP
type: SiteQuality
SIO_000300: 1.853312e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 9.06e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.467406380027739e-4
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.403e0

DP
type: SiteQuality
SIO_000300: 1.853185e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.065e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.1e-2

FS
type: SiteQuality
SIO_000300: 3.171e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.18e-1

QD
type: SiteQuality
SIO_000300: 1.527e1

MQ
type: SiteQuality
SIO_000300: 5.788e1

GenotypeQuality
all individuals: 2612
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 874
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2164
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.663703131039814e-5
allele num: 10348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66640
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.161e0

DP
type: SiteQuality
SIO_000300: 1.849357e6

MQRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.208e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.313e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.295e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.465e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e0

MQ
type: SiteQuality
SIO_000300: 5.824e1

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 871
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1683
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506296318611797e-5
allele num: 66388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.836128e6

VQSLOD
type: SiteQuality
SIO_000300: -2.332e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e-1

FS
type: SiteQuality
SIO_000300: 3.595e0

QD
type: SiteQuality
SIO_000300: 1.791e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e0

MQRankSum
type: SiteQuality
SIO_000300: -1.44e-1

MQ
type: SiteQuality
SIO_000300: 5.762e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.366e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
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bin: 9.75e1
variant carriers: 6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
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variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40376
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2600
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.037777911670784e-5
allele num: 66388
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.993e0

MQ
type: SiteQuality
SIO_000300: 5.91e1

MQRankSum
type: SiteQuality
SIO_000300: 2.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 9.63e-1

DP
type: SiteQuality
SIO_000300: 1.83591e6

QD
type: SiteQuality
SIO_000300: 1.333e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.91e-1

GenotypeQuality
all individuals: 862
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 44
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variant carriers: 0

GenotypeQuality
all individuals: 1988
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65836
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.004823151125402e-4
allele num: 9952
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16398
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.325e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 998
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8158
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16238
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.089566533815306e-5
allele num: 64734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.46e-1

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.699e1

DP
type: SiteQuality
SIO_000300: 1.709564e6

FS
type: SiteQuality
SIO_000300: 4.482e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

VQSLOD
type: SiteQuality
SIO_000300: -1.518e0

QD
type: SiteQuality
SIO_000300: 3.167e1

GenotypeQuality
all individuals: 849
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2945
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 1870
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 428
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GenotypeQuality
all individuals: 2330
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 648
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variant carriers: 0

GenotypeQuality
all individuals: 6689
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64534
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.466395363176717e-4
allele num: 16218
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 7.411067193675889e-4
allele num: 8096
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.881e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.389e-1

QD
type: SiteQuality
SIO_000300: 1.468e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e0

DP
type: SiteQuality
SIO_000300: 1.682845e6

GenotypeQuality
all individuals: 2257
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1773
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6172
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29594
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 845
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11266
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7986
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9458
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.805670038716123e-5
allele num: 64056
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.05e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.66e-1

MQ
type: SiteQuality
SIO_000300: 5.996e1

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.34e-1

QD
type: SiteQuality
SIO_000300: 1.107e1

DP
type: SiteQuality
SIO_000300: 1.607763e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

GenotypeQuality
all individuals: 623
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1513
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1617
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2922
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 19301
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4963
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7456
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11200
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.167664480978175e-5
allele num: 63138
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7772
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16020
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.06e0

VQSLOD
type: SiteQuality
SIO_000300: -1.361e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.69e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

QD
type: SiteQuality
SIO_000300: 1.958e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.04e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

DP
type: SiteQuality
SIO_000300: 1.46175e6