1-160786463-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786463
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786463
    reference: chr 1
allele count: 2
allele frequency: 1.679148335963999e-5
allele num: 119108
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1545C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1152C>T
  hgvsp: ENST00000368037.5:c.1152C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1545C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1545C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.108C>T
  hgvsp: ENST00000368040.1:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1152C>T
  hgvsp: ENST00000263285.6:c.1152C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.319C>T
  hgvsp: ENST00000368035.1:c.319C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11498
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41167
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2868
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41666
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser384Ser
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-160786464-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786464
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786464
    reference: chr 1
allele count: 6
allele frequency: 5.022601707684581e-5
allele num: 119460
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.320G>A
  hgvsp: ENSP00000357014.2:p.Val108Met
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1544G>A
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1153G>A
  hgvsp: ENSP00000357016.5:p.Val385Met
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1153G>A
  hgvsp: ENSP00000263285.5:p.Val385Met
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1544G>A
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.109G>A
  hgvsp: ENSP00000357019.1:p.Val37Met
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1544G>A
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11604
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41216
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1200
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2511
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val385Met
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ

1-160786472-C-CG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786472
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786473
    reference: chr 1
allele count: 1
allele frequency: 8.306061763875276e-6
allele num: 120394
alternate allele: CG
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.122dupG
  hgvsp: ENSP00000357019.1:p.Asn42LysfsTer31
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.333dupG
  hgvsp: ENSP00000357014.2:p.Asn113LysfsTer31
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1531dupG
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1166dupG
  hgvsp: ENSP00000357016.5:p.Asn390LysfsTer31
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1166dupG
  hgvsp: ENSP00000263285.5:p.Asn390LysfsTer31
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1531dupG
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1531dupG
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4831
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12021
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41088
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2592
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42106
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1350
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Asn390LysfsTer31
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

1-160786472-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786472
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786472
    reference: chr 1
allele count: 121
allele frequency: 1.005033473428909e-3
allele num: 120394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.117C>T
  hgvsp: ENST00000368040.1:c.117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1161C>T
  hgvsp: ENST00000263285.6:c.1161C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1536C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1536C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1536C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.328C>T
  hgvsp: ENST00000368035.1:c.328C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1161C>T
  hgvsp: ENST00000368037.5:c.1161C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12021
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 41088
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 4831
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 6863
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3006
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42106
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1350
  bin: 9.75e1
  variant carriers: 121
hgvs: p.Asp387Asp
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD

1-160786473-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786473
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786473
    reference: chr 1
allele count: 14
allele frequency: 1.161170459823502e-4
allele num: 120568
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.329G>A
  hgvsp: ENSP00000357014.2:p.Gly111Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1162G>A
  hgvsp: ENSP00000263285.5:p.Gly388Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1535G>A
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.118G>A
  hgvsp: ENSP00000357019.1:p.Gly40Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1535G>A
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1162G>A
  hgvsp: ENSP00000357016.5:p.Gly388Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1535G>A
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4918
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40999
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12097
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1339
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3040
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly388Arg
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

1-160786476-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786476
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786476
    reference: chr 1
allele count: 1
allele frequency: 8.275953389830508e-6
allele num: 120832
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1532G>A
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1532G>A
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1165G>A
  hgvsp: ENSP00000357016.5:p.Gly389Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.121G>A
  hgvsp: ENSP00000357019.1:p.Gly41Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1165G>A
  hgvsp: ENSP00000263285.5:p.Gly389Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1532G>A
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.332G>A
  hgvsp: ENSP00000357014.2:p.Gly112Arg
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12239
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3115
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly389Arg
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

1-160786480-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786480
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786480
    reference: chr 1
allele count: 1
allele frequency: 8.263916435277007e-6
allele num: 121008
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.336A>T
  hgvsp: ENSP00000357014.2:p.Asn113Ile
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.125A>T
  hgvsp: ENSP00000357019.1:p.Asn42Ile
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1528A>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1528A>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1169A>T
  hgvsp: ENSP00000263285.5:p.Asn390Ile
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1169A>T
  hgvsp: ENSP00000357016.5:p.Asn390Ile
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1528A>T
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12302
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40957
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7040
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2709
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn390Ile
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

1-160786484-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786484
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786484
    reference: chr 1
allele count: 9
allele frequency: 7.428561995476831e-5
allele num: 121154
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.129T>C
  hgvsp: ENST00000368040.1:c.129T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1173T>C
  hgvsp: ENST00000368037.5:c.1173T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.340T>C
  hgvsp: ENST00000368035.1:c.340T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1524T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1524T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1524T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1173T>C
  hgvsp: ENST00000263285.6:c.1173T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12363
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 40941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5093
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7063
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42293
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2723
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr391Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

1-160786488-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786488
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786488
    reference: chr 1
allele count: 1
allele frequency: 8.250552787036732e-6
allele num: 121204
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.344A>G
  hgvsp: ENSP00000357014.2:p.Met116Val
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.133A>G
  hgvsp: ENSP00000357019.1:p.Met45Val
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1520A>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1177A>G
  hgvsp: ENSP00000263285.5:p.Met393Val
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1177A>G
  hgvsp: ENSP00000357016.5:p.Met393Val
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1520A>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1520A>G
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12408
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5127
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3180
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42278
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7075
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Met393Val
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD

1-160786489-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786489
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786489
    reference: chr 1
allele count: 1
allele frequency: 8.249327679794096e-6
allele num: 121222
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1519T>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.345T>G
  hgvsp: ENSP00000357014.2:p.Met116Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1178T>G
  hgvsp: ENSP00000357016.5:p.Met393Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1519T>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.134T>G
  hgvsp: ENSP00000357019.1:p.Met45Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1178T>G
  hgvsp: ENSP00000263285.5:p.Met393Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1519T>G
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12416
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40887
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3182
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42289
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Met393Arg
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

1-160786503-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786503
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786503
    reference: chr 1
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1192C>T
  hgvsp: ENSP00000357016.5:p.Pro398Ser
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1505C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1505C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.359C>T
  hgvsp: ENSP00000357014.2:p.Pro121Ser
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.148C>T
  hgvsp: ENSP00000357019.1:p.Pro50Ser
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1505C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1192C>T
  hgvsp: ENSP00000263285.5:p.Pro398Ser
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5243
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12505
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2766
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2096
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro398Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD

1-160786504-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786504
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786504
    reference: chr 1
allele count: 3
allele frequency: 2.472065658063878e-5
allele num: 121356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1193C>T
  hgvsp: ENSP00000357016.5:p.Pro398Leu
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1193C>T
  hgvsp: ENSP00000263285.5:p.Pro398Leu
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1504C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1504C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1504C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.149C>T
  hgvsp: ENSP00000357019.1:p.Pro50Leu
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.360C>T
  hgvsp: ENSP00000357014.2:p.Pro121Leu
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12502
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40739
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5250
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1443
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2765
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42264
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro398Leu
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD

1-160786505-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786505
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786505
    reference: chr 1
allele count: 2
allele frequency: 1.647853670594051e-5
allele num: 121370
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1503G>A
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.150G>A
  hgvsp: ENST00000368040.1:c.150G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1194G>A
  hgvsp: ENST00000368037.5:c.1194G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1194G>A
  hgvsp: ENST00000263285.6:c.1194G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.361G>A
  hgvsp: ENST00000368035.1:c.361G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1503G>A
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1503G>A
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40717
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2102
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1448
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3231
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42248
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2769
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro398Pro
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/1-160786517-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786517
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786517
    reference: chr 1
allele count: 2
allele frequency: 1.647473599235572e-5
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.162A>C
  hgvsp: ENSP00000357019.1:p.Glu54Asp
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.373A>C
  hgvsp: ENSP00000357014.2:p.Glu125Asp
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1206A>C
  hgvsp: ENSP00000263285.5:p.Glu402Asp
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1491A>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1206A>C
  hgvsp: ENSP00000357016.5:p.Glu402Asp
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1491A>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1491A>C
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12549
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42274
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2785
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Glu402Asp
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

1-160786524-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786524
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786524
    reference: chr 1
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.169G>T
  hgvsp: ENSP00000357019.1:p.Val57Leu
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1213G>T
  hgvsp: ENSP00000357016.5:p.Val405Leu
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1213G>T
  hgvsp: ENSP00000263285.5:p.Val405Leu
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1484G>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1484G>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1484G>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.380G>T
  hgvsp: ENSP00000357014.2:p.Val128Leu
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40649
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5294
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2118
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2785
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7114
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3246
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val405Leu
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum

1-160786549-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786549
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786549
    reference: chr 1
allele count: 765
allele frequency: 6.301275081545913e-3
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1238A>G
  hgvsp: ENSP00000263285.5:p.Asn413Ser
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1459A>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1238A>G
  hgvsp: ENSP00000357016.5:p.Asn413Ser
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1459A>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1459A>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.405A>G
  hgvsp: ENSP00000357014.2:p.Asn136Ser
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.194A>G
  hgvsp: ENSP00000357019.1:p.Asn65Ser
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 40069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5245
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12397
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 4.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 9.75e1
  variant carriers: 343
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3190
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2272
  bin: 9.75e1
  variant carriers: 751
genotype quality: GenotypeQuality
  all individuals: 7021
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn413Ser
num of homozygotes: 14
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

1-160786549-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786549
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786549
    reference: chr 1
allele count: 83
allele frequency: 6.836677539455042e-4
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1459A>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.194A>T
  hgvsp: ENSP00000357019.1:p.Asn65Ile
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1238A>T
  hgvsp: ENSP00000263285.5:p.Asn413Ile
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1238A>T
  hgvsp: ENSP00000357016.5:p.Asn413Ile
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.405A>T
  hgvsp: ENSP00000357014.2:p.Asn136Ile
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1459A>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1459A>T
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5245
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12397
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 9.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3190
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2093
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn413Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
reference allele: A
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

1-160786552-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786552
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786552
    reference: chr 1
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.408T>C
  hgvsp: ENSP00000357014.2:p.Val137Ala
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1241T>C
  hgvsp: ENSP00000263285.5:p.Val414Ala
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.197T>C
  hgvsp: ENSP00000357019.1:p.Val66Ala
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1241T>C
  hgvsp: ENSP00000357016.5:p.Val414Ala
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1456T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1456T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1456T>C
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40099
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5416
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12584
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3239
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val414Ala
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-160786583-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786583
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786583
    reference: chr 1
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1425C>A
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1425C>A
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1425C>A
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1272C>A
  hgvsp: ENSP00000263285.5:p.Asn424Lys
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.228C>A
  hgvsp: ENSP00000357019.1:p.Asn76Lys
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.439C>A
  hgvsp: ENSP00000357014.2:p.Asn147Lys
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1272C>A
  hgvsp: ENSP00000357016.5:p.Asn424Lys
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12587
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5421
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2778
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41945
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asn424Lys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

1-160786594-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786594
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786594
    reference: chr 1
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1283C>T
  hgvsp: ENSP00000263285.5:p.Thr428Ile
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1414C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1414C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.239C>T
  hgvsp: ENSP00000357019.1:p.Thr80Ile
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1414C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.450C>T
  hgvsp: ENSP00000357014.2:p.Thr151Ile
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1283C>T
  hgvsp: ENSP00000357016.5:p.Thr428Ile
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40084
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12591
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5421
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3240
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2780
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7099
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2137
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr428Ile
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD

1-160786595-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786595
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786595
    reference: chr 1
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1413A>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.240A>G
  hgvsp: ENST00000368040.1:c.240A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1413A>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1413A>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1284A>G
  hgvsp: ENST00000368037.5:c.1284A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1284A>G
  hgvsp: ENST00000263285.6:c.1284A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.451A>G
  hgvsp: ENST00000368035.1:c.451A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12591
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5421
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40084
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr428Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

1-160786609-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786609
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786609
    reference: chr 1
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1399T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1298T>C
  hgvsp: ENSP00000263285.5:p.Val433Ala
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1399T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1399T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.254T>C
  hgvsp: ENSP00000357019.1:p.Val85Ala
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.465T>C
  hgvsp: ENSP00000357014.2:p.Val156Ala
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1298T>C
  hgvsp: ENSP00000357016.5:p.Val433Ala
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5420
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12593
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40076
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7099
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3239
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val433Ala
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

1-160786613-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786613
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786613
    reference: chr 1
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1395C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1395C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1395C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1302C>T
  hgvsp: ENST00000263285.6:c.1302C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.469C>T
  hgvsp: ENST00000368035.1:c.469C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.258C>T
  hgvsp: ENST00000368040.1:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1302C>T
  hgvsp: ENST00000368037.5:c.1302C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5421
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40074
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12594
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41937
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser434Ser
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff

1-160786617-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786617
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786617
    reference: chr 1
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1391A>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1391A>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.262A>G
  hgvsp: ENSP00000357019.1:p.Ser88Gly
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1306A>G
  hgvsp: ENSP00000263285.5:p.Ser436Gly
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.473A>G
  hgvsp: ENSP00000357014.2:p.Ser159Gly
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1306A>G
  hgvsp: ENSP00000357016.5:p.Ser436Gly
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1391A>G
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40070
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12590
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5418
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3238
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7095
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser436Gly
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

1-160786621-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786621
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786621
    reference: chr 1
allele count: 2
allele frequency: 1.647419317638919e-5
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.266C>G
  hgvsp: ENSP00000357019.1:p.Ser89Cys
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.477C>G
  hgvsp: ENSP00000357014.2:p.Ser160Cys
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1387C>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1387C>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1310C>G
  hgvsp: ENSP00000357016.5:p.Ser437Cys
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1310C>G
  hgvsp: ENSP00000263285.5:p.Ser437Cys
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1387C>G
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12595
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41929
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2776
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2138
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser437Cys
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

1-160786624-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786624
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786624
    reference: chr 1
allele count: 2
allele frequency: 1.647419317638919e-5
allele num: 121402
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1313A>G
  hgvsp: ENSP00000263285.5:p.His438Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.269A>G
  hgvsp: ENSP00000357019.1:p.His90Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1384A>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.480A>G
  hgvsp: ENSP00000357014.2:p.His161Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1313A>G
  hgvsp: ENSP00000357016.5:p.His438Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1384A>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1384A>G
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40060
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5413
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12595
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2776
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2139
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41931
  bin: 6.25e1
  variant carriers: 0
hgvs: p.His438Arg
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/1-160786632-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786632
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786632
    reference: chr 1
allele count: 3
allele frequency: 2.471291826614165e-5
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1321C>A
  hgvsp: ENSP00000263285.5:p.Leu441Ile
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.277C>A
  hgvsp: ENSP00000357019.1:p.Leu93Ile
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1321C>A
  hgvsp: ENSP00000357016.5:p.Leu441Ile
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.488C>A
  hgvsp: ENSP00000357014.2:p.Leu164Ile
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1376C>A
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1376C>A
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1376C>A
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12586
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5412
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40053
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7092
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu441Ile
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP

1-160786643-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786643
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786643
    reference: chr 1
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.288C>T
  hgvsp: ENST00000368040.1:c.288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.499C>T
  hgvsp: ENST00000368035.1:c.499C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1332C>T
  hgvsp: ENST00000263285.6:c.1332C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1332C>T
  hgvsp: ENST00000368037.5:c.1332C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1365C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1365C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1365C>T
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40004
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5412
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41854
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7082
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn444Asn
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD

1-160786645-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786645
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786645
    reference: chr 1
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.501T>A
  hgvsp: ENSP00000357014.2:p.Ile168Asn
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1334T>A
  hgvsp: ENSP00000263285.5:p.Ile445Asn
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.290T>A
  hgvsp: ENSP00000357019.1:p.Ile97Asn
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1334T>A
  hgvsp: ENSP00000357016.5:p.Ile445Asn
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1363T>A
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1363T>A
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1363T>A
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39976
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12575
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5409
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2775
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile445Asn
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD

1-160786649-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786649
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786649
    reference: chr 1
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.294T>C
  hgvsp: ENST00000368040.1:c.294T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.505T>C
  hgvsp: ENST00000368035.1:c.505T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1359T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1338T>C
  hgvsp: ENST00000368037.5:c.1338T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1359T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1338T>C
  hgvsp: ENST00000263285.6:c.1338T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1359T>C
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5407
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39913
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7071
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41722
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Cys446Cys
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

1-160786666-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786666
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786666
    reference: chr 1
allele count: 2
allele frequency: 1.65000165000165e-5
allele num: 121212
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1342C>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1342C>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1342C>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.509+13C>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.298+13C>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1342+13C>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1342+13C>G
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39596
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12474
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum

1-160786667-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786667
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786667
    reference: chr 1
allele count: 32
allele frequency: 2.63995908063425e-4
allele num: 121214
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1341T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1341T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1342+14T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1341T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1342+14T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.298+14T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.509+14T>C
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5321
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12480
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2747
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2136
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40763
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

1-160786668-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786668
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786668
    reference: chr 1
allele count: 1
allele frequency: 8.250280509537325e-6
allele num: 121208
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1342+15C>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1340C>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.509+15C>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.298+15C>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1342+15C>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1340C>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1340C>G
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12505
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39553
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2749
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6952
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-160786670-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786670
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786670
    reference: chr 1
allele count: 39008
allele frequency: 3.220501304448334e-1
allele num: 121124
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1338A>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1342+17A>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.509+17A>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1342+17A>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1338A>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1338A>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.298+17A>G
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 5.25e1
  variant carriers: 2339
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 6.75e1
  variant carriers: 2856
genotype depth: GenotypeDepth
  all individuals: 2939
  bin: 6.25e1
  variant carriers: 2906
genotype depth: GenotypeDepth
  all individuals: 18894
  bin: 2.25e1
  variant carriers: 606
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 8.75e1
  variant carriers: 1481
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 3.75e1
  variant carriers: 1261
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 4.75e1
  variant carriers: 1921
genotype depth: GenotypeDepth
  all individuals: 6801
  bin: 2.75e1
  variant carriers: 909
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.75e1
  variant carriers: 223
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 4.25e1
  variant carriers: 1501
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3564
  bin: 3.25e1
  variant carriers: 1230
genotype depth: GenotypeDepth
  all individuals: 1880
  bin: 8.25e1
  variant carriers: 1876
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 9.25e1
  variant carriers: 1186
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 7.75e1
  variant carriers: 2247
genotype depth: GenotypeDepth
  all individuals: 4596
  bin: 9.75e1
  variant carriers: 4581
genotype depth: GenotypeDepth
  all individuals: 2736
  bin: 7.25e1
  variant carriers: 2713
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 5.75e1
  variant carriers: 2681
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 9.25e1
  variant carriers: 124
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.25e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 1407
  bin: 7.75e1
  variant carriers: 94
num of homozygotes: 6437
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD

1-160786672-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786672
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786672
    reference: chr 1
allele count: 1
allele frequency: 8.278693953241936e-6
allele num: 120792
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1336T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1342+19T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1342+19T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.509+19T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.298+19T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1336T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1336T>C
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5251
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11597
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8503
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4297
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3078
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26380
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

1-160786675-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786675
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786675
    reference: chr 1
allele count: 41
allele frequency: 3.397639883320074e-4
allele num: 120672
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.509+22C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.298+22C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1333C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1342+22C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1333C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1333C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1342+22C>T
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8416
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3139
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11366
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4293
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19100
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 8.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2475
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1460
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3704
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1133
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3072
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

1-160786681-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786681
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786681
    reference: chr 1
allele count: 1
allele frequency: 8.298341991270144e-6
allele num: 120506
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1327T>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1342+28T>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1327T>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.298+28T>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1342+28T>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.509+28T>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1327T>G
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10786
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8129
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18726
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24824
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5989
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3061
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

1-160786688-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786688
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786688
    reference: chr 1
allele count: 1531
allele frequency: 1.273519772413449e-2
allele num: 120218
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1342+35A>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1320A>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1320A>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.298+35A>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.509+35A>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1342+35A>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1320A>G
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17728
  bin: 2.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 4.75e1
  variant carriers: 159
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5180
  bin: 3.75e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 4385
  bin: 4.25e1
  variant carriers: 167
genotype depth: GenotypeDepth
  all individuals: 7679
  bin: 3.25e1
  variant carriers: 103
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 9.75e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 7.25e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 5.25e1
  variant carriers: 121
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 6.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 9859
  bin: 2.75e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 6.25e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 1.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.75e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 5.75e1
  variant carriers: 111
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2330
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22687
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1422
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5630
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 96
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

1-160786691-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786691
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786691
    reference: chr 1
allele count: 3
allele frequency: 2.497668842413747e-5
allele num: 120112
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1317T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1317T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.509+38T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1342+38T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.298+38T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1317T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1342+38T>C
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7680
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9712
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17594
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4348
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22350
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1111
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13297
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1398
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2483
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1772
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2372
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-160786701-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160786701
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160786701
    reference: chr 1
allele count: 5
allele frequency: 4.198505332101772e-5
allele num: 119090
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-1307C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1342+48C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.298+48C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.509+48C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-1307C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-1307C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1342+48C>T
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5077
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8951
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18633
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6807
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3184
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
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genotype depth: GenotypeDepth
  all individuals: 4338
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 496
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18091
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3597
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 1467
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genotype quality: GenotypeQuality
  all individuals: 1832
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1772
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

1-160787957-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160787957
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160787957
    reference: chr 1
allele count: 1
allele frequency: 8.455658526686058e-6
allele num: 118264
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.510-51C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-51C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1343-51C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-51C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.299-51C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-51C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1343-51C>T
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7992
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4453
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4864
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8234
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11350
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3435
  bin: 9.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
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genotype depth: GenotypeDepth
  all individuals: 174
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genotype depth: GenotypeDepth
  all individuals: 200
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genotype depth: GenotypeDepth
  all individuals: 378
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14063
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4312
  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1611
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

1-160787959-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160787959
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160787959
    reference: chr 1
allele count: 1
allele frequency: 8.441383036196651e-6
allele num: 118464
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-49G>A
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.510-49G>A
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-49G>A
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1343-49G>A
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-49G>A
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.299-49G>A
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1343-49G>A
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11637
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2710
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3435
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2879
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4316
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-160787966-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160787966
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160787966
    reference: chr 1
allele count: 1
allele frequency: 8.423748231012871e-6
allele num: 118712
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-42T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-42T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.299-42T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1343-42T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-42T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1343-42T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.510-42T>C
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4269
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13635
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4662
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12075
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3435
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4889
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2713
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14079
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1347
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2224
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 1883
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 1580
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3696
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6149
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3092
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

1-160787976-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160787976
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160787976
    reference: chr 1
allele count: 2
allele frequency: 1.680954782316356e-5
allele num: 118980
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-32T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-32T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1343-32T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.510-32T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-32T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.299-32T>C
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1343-32T>C
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16263
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13118
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8956
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4939
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2724
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3435
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17206
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4603
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3205
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
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genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14099
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  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 511
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1393
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

1-160787990-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160787990
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160787990
    reference: chr 1
allele count: 1
allele frequency: 8.351986102295126e-6
allele num: 119732
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.299-18C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.510-18C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1343-18C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-18C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-18C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-18C>T
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1343-18C>T
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18337
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5023
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
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genotype depth: GenotypeDepth
  all individuals: 476
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 200
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3320
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genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

1-160788003-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160788003
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160788003
    reference: chr 1
allele count: 1
allele frequency: 8.287613333112331e-6
allele num: 120662
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.510-5C>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1343-5C>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.299-5C>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1073-5C>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1073-5C>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.953-5C>G
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1343-5C>G
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3435
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4062
  bin: 8.25e1
  variant carriers: 0
hgvs: c.1343-5C>G
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

1-160788015-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160788015
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160788015
    reference: chr 1
allele count: 2
allele frequency: 1.650818806127839e-5
allele num: 121152
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.306G>A
  hgvsp: ENST00000368040.1:c.306G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.960G>A
  hgvsp: ENST00000368041.2:c.960G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1350G>A
  hgvsp: ENST00000368037.5:c.1350G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.517G>A
  hgvsp: ENST00000368035.1:c.517G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1350G>A
  hgvsp: ENST00000263285.6:c.1350G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1080G>A
  hgvsp: ENST00000341032.4:c.1080G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1080G>A
  hgvsp: ENST00000392203.4:c.1080G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5058
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9624
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14754
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19580
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3435
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22040
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1938
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4853
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7150
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu450Glu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

1-160788026-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160788026
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160788026
    reference: chr 1
allele count: 1
allele frequency: 8.244566830458728e-6
allele num: 121292
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.971A>G
  hgvsp: ENSP00000357020.2:p.Lys324Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.528A>G
  hgvsp: ENSP00000357014.2:p.Lys177Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1361A>G
  hgvsp: ENSP00000263285.5:p.Lys454Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.317A>G
  hgvsp: ENSP00000357019.1:p.Lys106Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1361A>G
  hgvsp: ENSP00000357016.5:p.Lys454Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1091A>G
  hgvsp: ENSP00000376039.4:p.Lys364Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1091A>G
  hgvsp: ENSP00000342921.4:p.Lys364Arg
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5058
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19647
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14844
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3435
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9643
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4073
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3397
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1938
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Lys454Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ

1-160788032-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160788032
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160788032
    reference: chr 1
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1367G>A
  hgvsp: ENSP00000357016.5:p.Trp456Ter
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1097G>A
  hgvsp: ENSP00000376039.4:p.Trp366Ter
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.977G>A
  hgvsp: ENSP00000357020.2:p.Trp326Ter
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1367G>A
  hgvsp: ENSP00000263285.5:p.Trp456Ter
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.534G>A
  hgvsp: ENSP00000357014.2:p.Trp179Ter
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.323G>A
  hgvsp: ENSP00000357019.1:p.Trp108Ter
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1097G>A
  hgvsp: ENSP00000342921.4:p.Trp366Ter
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3435
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19663
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9647
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7178
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22269
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Trp456Ter
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-160788035-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160788035
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160788035
    reference: chr 1
allele count: 7
allele frequency: 5.769008884273682e-5
allele num: 121338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.980T>C
  hgvsp: ENSP00000357020.2:p.Ile327Thr
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1100T>C
  hgvsp: ENSP00000342921.4:p.Ile367Thr
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1370T>C
  hgvsp: ENSP00000357016.5:p.Ile457Thr
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.537T>C
  hgvsp: ENSP00000357014.2:p.Ile180Thr
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.326T>C
  hgvsp: ENSP00000357019.1:p.Ile109Thr
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1100T>C
  hgvsp: ENSP00000376039.4:p.Ile367Thr
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1370T>C
  hgvsp: ENSP00000263285.5:p.Ile457Thr
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19660
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3436
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5058
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9644
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22276
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3399
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1940
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile457Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD

1-160788047-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160788047
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160788047
    reference: chr 1
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.338T>G
  hgvsp: ENSP00000357019.1:p.Leu113Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.549T>G
  hgvsp: ENSP00000357014.2:p.Leu184Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.992T>G
  hgvsp: ENSP00000357020.2:p.Leu331Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1112T>G
  hgvsp: ENSP00000342921.4:p.Leu371Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1382T>G
  hgvsp: ENSP00000263285.5:p.Leu461Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1382T>G
  hgvsp: ENSP00000357016.5:p.Leu461Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1112T>G
  hgvsp: ENSP00000376039.4:p.Leu371Arg
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9645
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5062
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19656
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3435
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4073
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4855
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2738
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu461Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

1-160788049-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160788049
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160788049
    reference: chr 1
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.994A>G
  hgvsp: ENSP00000357020.2:p.Met332Val
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1114A>G
  hgvsp: ENSP00000342921.4:p.Met372Val
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.551A>G
  hgvsp: ENSP00000357014.2:p.Met185Val
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1114A>G
  hgvsp: ENSP00000376039.4:p.Met372Val
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1384A>G
  hgvsp: ENSP00000263285.5:p.Met462Val
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.340A>G
  hgvsp: ENSP00000357019.1:p.Met114Val
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1384A>G
  hgvsp: ENSP00000357016.5:p.Met462Val
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5060
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14894
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9648
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3435
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2738
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22289
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3401
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14178
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Met462Val
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum

1-160788060-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160788060
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160788060
    reference: chr 1
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1125T>C
  hgvsp: ENST00000341032.4:c.1125T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1395T>C
  hgvsp: ENST00000368037.5:c.1395T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1125T>C
  hgvsp: ENST00000392203.4:c.1125T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.1005T>C
  hgvsp: ENST00000368041.2:c.1005T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.351T>C
  hgvsp: ENST00000368040.1:c.351T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1395T>C
  hgvsp: ENST00000263285.6:c.1395T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.562T>C
  hgvsp: ENST00000368035.1:c.562T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19649
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14904
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9647
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3436
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5060
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2738
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4855
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7186
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu465Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum

1-160788061-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160788061
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160788061
    reference: chr 1
allele count: 2
allele frequency: 1.647772211969417e-5
allele num: 121376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.352C>G
  hgvsp: ENSP00000357019.1:p.Leu118Val
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.563C>G
  hgvsp: ENSP00000357014.2:p.Leu189Val
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1126C>G
  hgvsp: ENSP00000342921.4:p.Leu376Val
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1396C>G
  hgvsp: ENSP00000357016.5:p.Leu466Val
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1126C>G
  hgvsp: ENSP00000376039.4:p.Leu376Val
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.1006C>G
  hgvsp: ENSP00000357020.2:p.Leu336Val
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1396C>G
  hgvsp: ENSP00000263285.5:p.Leu466Val
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19649
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14903
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9647
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5060
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3436
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22298
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4075
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3400
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7184
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu466Val
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

1-160788064-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160788064
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160788064
    reference: chr 1
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.566T>G
  hgvsp: ENSP00000357014.2:p.Cys190Gly
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.355T>G
  hgvsp: ENSP00000357019.1:p.Cys119Gly
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1129T>G
  hgvsp: ENSP00000342921.4:p.Cys377Gly
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1399T>G
  hgvsp: ENSP00000357016.5:p.Cys467Gly
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.1009T>G
  hgvsp: ENSP00000357020.2:p.Cys337Gly
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1399T>G
  hgvsp: ENSP00000263285.5:p.Cys467Gly
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1129T>G
  hgvsp: ENSP00000376039.4:p.Cys377Gly
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19643
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14904
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5060
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3435
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9649
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3400
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Cys467Gly
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

1-160788065-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160788065
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160788065
    reference: chr 1
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1400G>A
  hgvsp: ENSP00000263285.5:p.Cys467Tyr
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.567G>A
  hgvsp: ENSP00000357014.2:p.Cys190Tyr
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1400G>A
  hgvsp: ENSP00000357016.5:p.Cys467Tyr
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1130G>A
  hgvsp: ENSP00000342921.4:p.Cys377Tyr
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1130G>A
  hgvsp: ENSP00000376039.4:p.Cys377Tyr
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.356G>A
  hgvsp: ENSP00000357019.1:p.Cys119Tyr
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.1010G>A
  hgvsp: ENSP00000357020.2:p.Cys337Tyr
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3435
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14905
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19644
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9648
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14179
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4075
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4852
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Cys467Tyr
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/1-160788066-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160788066
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160788066
    reference: chr 1
allele count: 3
allele frequency: 2.471699045924168e-5
allele num: 121374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.1011C>A
  hgvsp: ENSP00000357020.2:p.Cys337Ter
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1131C>A
  hgvsp: ENSP00000342921.4:p.Cys377Ter
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.357C>A
  hgvsp: ENSP00000357019.1:p.Cys119Ter
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.568C>A
  hgvsp: ENSP00000357014.2:p.Cys190Ter
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1131C>A
  hgvsp: ENSP00000376039.4:p.Cys377Ter
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1401C>A
  hgvsp: ENSP00000357016.5:p.Cys467Ter
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1401C>A
  hgvsp: ENSP00000263285.5:p.Cys467Ter
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3438
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9652
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19637
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14903
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22288
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3402
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Cys467Ter
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP

1-160788066-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160788066
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160788066
    reference: chr 1
allele count: 2
allele frequency: 1.647799363949445e-5
allele num: 121374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.1011C>T
  hgvsp: ENST00000368041.2:c.1011C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1401C>T
  hgvsp: ENST00000368037.5:c.1401C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1131C>T
  hgvsp: ENST00000392203.4:c.1131C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1401C>T
  hgvsp: ENST00000263285.6:c.1401C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.568C>T
  hgvsp: ENST00000368035.1:c.568C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.357C>T
  hgvsp: ENST00000368040.1:c.357C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1131C>T
  hgvsp: ENST00000341032.4:c.1131C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5059
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19637
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9652
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3438
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14903
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14182
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2738
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3402
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4853
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22288
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Cys467Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

1-160788067-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160788067
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160788067
    reference: chr 1
allele count: 1518
allele frequency: 1.250659108884788e-2
allele num: 121376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1132G>A
  hgvsp: ENSP00000342921.4:p.Val378Ile
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1402G>A
  hgvsp: ENSP00000263285.5:p.Val468Ile
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1402G>A
  hgvsp: ENSP00000357016.5:p.Val468Ile
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.569G>A
  hgvsp: ENSP00000357014.2:p.Val191Ile
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.358G>A
  hgvsp: ENSP00000357019.1:p.Val120Ile
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.1012G>A
  hgvsp: ENSP00000357020.2:p.Val338Ile
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1132G>A
  hgvsp: ENSP00000376039.4:p.Val378Ile
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 7.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 5.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19210
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 5.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 9480
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 4977
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 9.75e1
  variant carriers: 998
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 6.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 14628
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.25e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 8.75e1
  variant carriers: 69
genotype quality: GenotypeQuality
  all individuals: 15096
  bin: 9.75e1
  variant carriers: 1426
genotype quality: GenotypeQuality
  all individuals: 1904
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3979
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7047
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val468Ile
num of homozygotes: 92
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ

1-160788068-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160788068
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160788068
    reference: chr 1
allele count: 16
allele frequency: 1.318217769575534e-4
allele num: 121376
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.570T>C
  hgvsp: ENSP00000357014.2:p.Val191Ala
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1133T>C
  hgvsp: ENSP00000376039.4:p.Val378Ala
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1133T>C
  hgvsp: ENSP00000342921.4:p.Val378Ala
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.1013T>C
  hgvsp: ENSP00000357020.2:p.Val338Ala
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1403T>C
  hgvsp: ENSP00000357016.5:p.Val468Ala
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.359T>C
  hgvsp: ENSP00000357019.1:p.Val120Ala
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1403T>C
  hgvsp: ENSP00000263285.5:p.Val468Ala
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5063
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19208
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14669
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2804
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3590
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14834
  bin: 9.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 4020
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3348
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val468Ala
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

1-160788070-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160788070
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160788070
    reference: chr 1
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1135G>A
  hgvsp: ENSP00000342921.4:p.Gly379Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.572G>A
  hgvsp: ENSP00000357014.2:p.Gly192Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1135G>A
  hgvsp: ENSP00000376039.4:p.Gly379Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1405G>A
  hgvsp: ENSP00000357016.5:p.Gly469Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.361G>A
  hgvsp: ENSP00000357019.1:p.Gly121Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.1015G>A
  hgvsp: ENSP00000357020.2:p.Gly339Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1405G>A
  hgvsp: ENSP00000263285.5:p.Gly469Arg
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5066
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19202
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4799
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2738
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1938
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly469Arg
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

1-160788075-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160788075
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160788075
    reference: chr 1
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.577C>T
  hgvsp: ENST00000368035.1:c.577C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.366C>T
  hgvsp: ENST00000368040.1:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1140C>T
  hgvsp: ENST00000392203.4:c.1140C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.1020C>T
  hgvsp: ENST00000368041.2:c.1020C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1140C>T
  hgvsp: ENST00000341032.4:c.1140C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1410C>T
  hgvsp: ENST00000368037.5:c.1410C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1410C>T
  hgvsp: ENST00000263285.6:c.1410C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9522
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19197
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5065
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14671
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3351
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14830
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7083
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21901
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile470Ile
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

1-160788079-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160788079
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160788079
    reference: chr 1
allele count: 2
allele frequency: 1.647799363949445e-5
allele num: 121374
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.1024A>G
  hgvsp: ENSP00000357020.2:p.Ser342Gly
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1414A>G
  hgvsp: ENSP00000357016.5:p.Ser472Gly
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1144A>G
  hgvsp: ENSP00000342921.4:p.Ser382Gly
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1144A>G
  hgvsp: ENSP00000376039.4:p.Ser382Gly
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.581A>G
  hgvsp: ENSP00000357014.2:p.Ser195Gly
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1414A>G
  hgvsp: ENSP00000263285.5:p.Ser472Gly
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.370A>G
  hgvsp: ENSP00000357019.1:p.Ser124Gly
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5066
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9524
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2807
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19188
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14831
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2737
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1937
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21890
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser472Gly
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP

1-160788084-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160788084
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160788084
    reference: chr 1
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.586G>A
  hgvsp: ENSP00000357014.2:p.Trp196Ter
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1149G>A
  hgvsp: ENSP00000376039.4:p.Trp383Ter
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1419G>A
  hgvsp: ENSP00000357016.5:p.Trp473Ter
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1149G>A
  hgvsp: ENSP00000342921.4:p.Trp383Ter
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1419G>A
  hgvsp: ENSP00000263285.5:p.Trp473Ter
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.1029G>A
  hgvsp: ENSP00000357020.2:p.Trp343Ter
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.375G>A
  hgvsp: ENSP00000357019.1:p.Trp125Ter
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14678
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3579
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9528
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5065
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1937
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21879
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2738
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Trp473Ter
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

1-160788085-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160788085
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160788085
    reference: chr 1
allele count: 2
allele frequency: 1.647799363949445e-5
allele num: 121374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.376T>A
  hgvsp: ENSP00000357019.1:p.Cys126Ser
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1150T>A
  hgvsp: ENSP00000342921.4:p.Cys384Ser
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1420T>A
  hgvsp: ENSP00000357016.5:p.Cys474Ser
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.587T>A
  hgvsp: ENSP00000357014.2:p.Cys197Ser
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1420T>A
  hgvsp: ENSP00000263285.5:p.Cys474Ser
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.1030T>A
  hgvsp: ENSP00000357020.2:p.Cys344Ser
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1150T>A
  hgvsp: ENSP00000376039.4:p.Cys384Ser
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9527
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14676
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5066
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19160
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2737
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7078
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Cys474Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

1-160788085-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160788085
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160788085
    reference: chr 1
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1150T>C
  hgvsp: ENSP00000376039.4:p.Cys384Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1150T>C
  hgvsp: ENSP00000342921.4:p.Cys384Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.587T>C
  hgvsp: ENSP00000357014.2:p.Cys197Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1420T>C
  hgvsp: ENSP00000263285.5:p.Cys474Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.1030T>C
  hgvsp: ENSP00000357020.2:p.Cys344Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.376T>C
  hgvsp: ENSP00000357019.1:p.Cys126Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1420T>C
  hgvsp: ENSP00000357016.5:p.Cys474Arg
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5066
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9527
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14676
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19160
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21876
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4797
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Cys474Arg
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

1-160788089-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160788089
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160788089
    reference: chr 1
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1154T>C
  hgvsp: ENSP00000342921.4:p.Ile385Thr
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.380T>C
  hgvsp: ENSP00000357019.1:p.Ile127Thr
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.591T>C
  hgvsp: ENSP00000357014.2:p.Ile198Thr
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1424T>C
  hgvsp: ENSP00000357016.5:p.Ile475Thr
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.1034T>C
  hgvsp: ENSP00000357020.2:p.Ile345Thr
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1154T>C
  hgvsp: ENSP00000376039.4:p.Ile385Thr
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1424T>C
  hgvsp: ENSP00000263285.5:p.Ile475Thr
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9526
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3579
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5066
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19134
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4020
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4793
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile475Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

1-160788091-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160788091
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160788091
    reference: chr 1
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1156T>A
  hgvsp: ENSP00000342921.4:p.Trp386Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.1036T>A
  hgvsp: ENSP00000357020.2:p.Trp346Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1426T>A
  hgvsp: ENSP00000263285.5:p.Trp476Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1426T>A
  hgvsp: ENSP00000357016.5:p.Trp476Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.593T>A
  hgvsp: ENSP00000357014.2:p.Trp199Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.382T>A
  hgvsp: ENSP00000357019.1:p.Trp128Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1156T>A
  hgvsp: ENSP00000376039.4:p.Trp386Arg
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19119
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5066
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9528
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1937
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7071
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14832
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21836
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Trp476Arg
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

1-160788097-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160788097
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160788097
    reference: chr 1
allele count: 74
allele frequency: 6.099470829692883e-4
allele num: 121322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1162C>T
  hgvsp: ENSP00000342921.4:p.Arg388Ter
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.388C>T
  hgvsp: ENSP00000357019.1:p.Arg130Ter
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.599C>T
  hgvsp: ENSP00000357014.2:p.Arg201Ter
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1432C>T
  hgvsp: ENSP00000357016.5:p.Arg478Ter
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1162C>T
  hgvsp: ENSP00000376039.4:p.Arg388Ter
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.1042C>T
  hgvsp: ENSP00000357020.2:p.Arg348Ter
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1432C>T
  hgvsp: ENSP00000263285.5:p.Arg478Ter
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 18995
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 14649
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5068
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3592
  bin: 9.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 9526
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3341
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4018
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21683
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg478Ter
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

1-160788098-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160788098
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160788098
    reference: chr 1
allele count: 3
allele frequency: 2.473043822336532e-5
allele num: 121308
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1163G>A
  hgvsp: ENSP00000376039.4:p.Arg388Gln
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.1043G>A
  hgvsp: ENSP00000357020.2:p.Arg348Gln
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.600G>A
  hgvsp: ENSP00000357014.2:p.Arg201Gln
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.389G>A
  hgvsp: ENSP00000357019.1:p.Arg130Gln
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1433G>A
  hgvsp: ENSP00000263285.5:p.Arg478Gln
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1163G>A
  hgvsp: ENSP00000342921.4:p.Arg388Gln
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1433G>A
  hgvsp: ENSP00000357016.5:p.Arg478Gln
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18957
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3575
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5077
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1935
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7057
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg478Gln
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

1-160788098-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160788098
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160788097
    reference: chr 1
allele count: 15
allele frequency: 1.236521911168266e-4
allele num: 121308
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.604delA
  hgvsp: ENSP00000357014.2:p.Gly203AspfsTer225
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1167delA
  hgvsp: ENSP00000342921.4:p.Gly390AspfsTer218
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1437delA
  hgvsp: ENSP00000263285.5:p.Gly480AspfsTer262
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.1047delA
  hgvsp: ENSP00000357020.2:p.Gly350AspfsTer263
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1437delA
  hgvsp: ENSP00000357016.5:p.Gly480AspfsTer248
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.393delA
  hgvsp: ENSP00000357019.1:p.Gly132AspfsTer225
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1167delA
  hgvsp: ENSP00000376039.4:p.Gly390AspfsTer262
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18957
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3575
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5077
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2809
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14848
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 21668
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3341
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1935
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly480AspfsTer262
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: GA
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff

1-160788103-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 160788103
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 160788103
    reference: chr 1
allele count: 2
allele frequency: 1.649103712132456e-5
allele num: 121278
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000376039
  ensembl transcript: ENST00000392203
  gene symbol: LY9
  hgvsc: ENST00000392203.4:c.1168G>C
  hgvsp: ENSP00000376039.4:p.Gly390Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000342921
  ensembl transcript: ENST00000341032
  gene symbol: LY9
  hgvsc: ENST00000341032.4:c.1168G>C
  hgvsp: ENSP00000342921.4:p.Gly390Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357014
  ensembl transcript: ENST00000368035
  gene symbol: LY9
  hgvsc: ENST00000368035.1:c.605G>C
  hgvsp: ENSP00000357014.2:p.Gly203Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357020
  ensembl transcript: ENST00000368041
  gene symbol: LY9
  hgvsc: ENST00000368041.2:c.1048G>C
  hgvsp: ENSP00000357020.2:p.Gly350Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357016
  ensembl transcript: ENST00000368037
  gene symbol: LY9
  hgvsc: ENST00000368037.5:c.1438G>C
  hgvsp: ENSP00000357016.5:p.Gly480Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000357019
  ensembl transcript: ENST00000368040
  gene symbol: LY9
  hgvsc: ENST00000368040.1:c.394G>C
  hgvsp: ENSP00000357019.1:p.Gly132Arg
  variant of: http://identifiers.org/hgnc/6730
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000122224
  ensembl protein: ENSP00000263285
  ensembl transcript: ENST00000263285
  gene symbol: LY9
  hgvsc: ENST00000263285.6:c.1438G>C
  hgvsp: ENSP00000263285.5:p.Gly480Arg
  variant of: http://identifiers.org/hgnc/6730
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18867
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2812
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9533
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5081
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Gly480Arg
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 286
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1234
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2470
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1183
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6658
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1794
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16094
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10190
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.131221719457014e-3
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11248
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519803033526855e-5
allele num: 65798
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.44e-1

FS
type: SiteQuality
SIO_000300: 2.266e0

DP
type: SiteQuality
SIO_000300: 1.43735e6

QD
type: SiteQuality
SIO_000300: 1.098e1

MQRankSum
type: SiteQuality
SIO_000300: -3.86e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.312e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

GenotypeQuality
all individuals: 1823
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2905
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6733
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41918
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.098629139876258e-5
allele num: 65944
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10206
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11280
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.74e0

MQRankSum
type: SiteQuality
SIO_000300: 6.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.04e-2

QD
type: SiteQuality
SIO_000300: 1.26e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.92e-1

FS
type: SiteQuality
SIO_000300: 1.389e0

DP
type: SiteQuality
SIO_000300: 1.4421e6

MQ
type: SiteQuality
SIO_000300: 5.919e1

GenotypeQuality
all individuals: 103
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6863
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1911
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3006
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.117704637220115e-5
allele num: 16346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.59e0

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.218e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.771e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

DP
type: SiteQuality
SIO_000300: 1.462567e6

FS
type: SiteQuality
SIO_000300: 1.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-2

GenotypeQuality
all individuals: 113
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2592
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1911
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.477857639693948e-4
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.117704637220115e-5
allele num: 16346
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.857198367981348e-4
allele num: 10294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 92
allele frequency: 1.387213510253317e-3
allele num: 66320
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.612546125461254e-4
allele num: 6504
num of homozygotes: 0

Latino
type: Population
allele count: 16
allele frequency: 1.402524544179523e-3
allele num: 11408
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.771e0

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

FS
type: SiteQuality
SIO_000300: 1.32e0

VQSLOD
type: SiteQuality
SIO_000300: 3.59e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.462567e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

QD
type: SiteQuality
SIO_000300: 1.218e1

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42094
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1940
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6888
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2616
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 1.95812622382889e-4
allele num: 66390
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.693679720822024e-5
allele num: 10316
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16374
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.19e-1

QD
type: SiteQuality
SIO_000300: 1.433e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.26e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.465947e6

GenotypeQuality
all individuals: 1378
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2685
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7001
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2022
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 823
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42102
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.716875871687587e-5
allele num: 11472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.377e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.47013e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.709e0

VQSLOD
type: SiteQuality
SIO_000300: 2.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.062e1

GenotypeQuality
all individuals: 1388
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2049
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42245
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3152
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 830
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.08198515995621e-5
allele num: 16442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.472898e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.55e-1

FS
type: SiteQuality
SIO_000300: 4.239e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.236e1

MQRankSum
type: SiteQuality
SIO_000300: 2.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

GenotypeQuality
all individuals: 793
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3163
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1403
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 157
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2057
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66634
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 7.815213615838833e-4
allele num: 11516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.09e-1

QD
type: SiteQuality
SIO_000300: 1.264e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.92e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

VQSLOD
type: SiteQuality
SIO_000300: 9.77e-1

DP
type: SiteQuality
SIO_000300: 1.475558e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.63e-1

GenotypeQuality
all individuals: 1409
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2075
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2739
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.065752759917505e-5
allele num: 16486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66656
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.606e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

FS
type: SiteQuality
SIO_000300: 6.841e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.477018e6

QD
type: SiteQuality
SIO_000300: 9.93e0

VQSLOD
type: SiteQuality
SIO_000300: 3.43e-1

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1411
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2077
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66662
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.633911368015414e-5
allele num: 10380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.22e-1

FS
type: SiteQuality
SIO_000300: 1.641e0

MQ
type: SiteQuality
SIO_000300: 5.58e1

QD
type: SiteQuality
SIO_000300: 1.119e1

DP
type: SiteQuality
SIO_000300: 1.477177e6

MQRankSum
type: SiteQuality
SIO_000300: -8.95e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.154e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.75e-1

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7101
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.97e-1

DP
type: SiteQuality
SIO_000300: 1.481067e6

MQRankSum
type: SiteQuality
SIO_000300: -7.65e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.57e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.94e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.101e1

GenotypeQuality
all individuals: 816
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.362e1

DP
type: SiteQuality
SIO_000300: 1.481936e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.74e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.2e0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997601918465228e-5
allele num: 66720
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.570000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.481925e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.79e-1

FS
type: SiteQuality
SIO_000300: 5.115e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.026e1

VQSLOD
type: SiteQuality
SIO_000300: 6.18e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 5
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.15e0

VQSLOD
type: SiteQuality
SIO_000300: -5.157e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.52e-1

FS
type: SiteQuality
SIO_000300: 7.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.482917e6

MQ
type: SiteQuality
SIO_000300: 5.953e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.87e0

QD
type: SiteQuality
SIO_000300: 1.101e1

GenotypeQuality
all individuals: 821
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7
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GenotypeQuality
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GenotypeQuality
all individuals: 4
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GenotypeQuality
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GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 1459
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variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.984e1

VQSLOD
type: SiteQuality
SIO_000300: -2.344e-1

DP
type: SiteQuality
SIO_000300: 1.483313e6

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.681e0

QD
type: SiteQuality
SIO_000300: 1.464e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 10
allele frequency: 9.609840476648087e-4
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 66
allele frequency: 5.701451278507256e-3
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 562
allele frequency: 3.403585271317829e-2
allele num: 16512
num of homozygotes: 14

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 6
allele frequency: 6.607929515418502e-3
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 86
allele frequency: 1.288698414601253e-3
allele num: 66734
num of homozygotes: 0

East Asian
type: Population
allele count: 35
allele frequency: 4.044372544488098e-3
allele num: 8654
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.396e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.07e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.63e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.552825e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.92e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 811
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 64
allele frequency: 9.59031378307909e-4
allele num: 66734
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 15
allele frequency: 9.084302325581395e-4
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.882952142994427e-4
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.978e1

QD
type: SiteQuality
SIO_000300: 1.396e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.07e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.82e-1

DP
type: SiteQuality
SIO_000300: 1.552825e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2776
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
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allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.35e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.175e0

QD
type: SiteQuality
SIO_000300: 1.634e1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.456e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.500132e6

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.172e0

FS
type: SiteQuality
SIO_000300: 2.689e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

QD
type: SiteQuality
SIO_000300: 1.023e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.601e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.16e0

DP
type: SiteQuality
SIO_000300: 1.500482e6

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.3e-1

DP
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SIO_000300: 1.500714e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.51e-1

InbreedingCoeff
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SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.64e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.807e0

MQRankSum
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SIO_000300: 5.98e-1

FS
type: SiteQuality
SIO_000300: 4.334e0

QD
type: SiteQuality
SIO_000300: 8.529999999999999e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

QD
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SIO_000300: 1.412e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.89e0

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.96e0

DP
type: SiteQuality
SIO_000300: 1.500714e6

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.500685e6

FS
type: SiteQuality
SIO_000300: 2.498e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.7e0

QD
type: SiteQuality
SIO_000300: 1.488e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.08e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.71e-1

MQ
type: SiteQuality
SIO_000300: 5.889e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.15e-1

GenotypeQuality
all individuals: 2779
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.073e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.28e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

VQSLOD
type: SiteQuality
SIO_000300: 4.35e0

QD
type: SiteQuality
SIO_000300: 1.533e1

DP
type: SiteQuality
SIO_000300: 1.500693e6

MQRankSum
type: SiteQuality
SIO_000300: -8.599999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.17e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.88e0

MQRankSum
type: SiteQuality
SIO_000300: 1.23e-1

QD
type: SiteQuality
SIO_000300: 9.43e0

FS
type: SiteQuality
SIO_000300: 2.547e0

DP
type: SiteQuality
SIO_000300: 1.500659e6

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 9.900000000000001e-3

ReadPosRankSum
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SIO_000300: -1.552e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.42e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
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allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

South Asian
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
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MQRankSum
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MQ
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QD
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ClippingRankSum
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SIO_000300: -1.22e-1

VQSLOD
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.8e-1

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.437e0

MQRankSum
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DP
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.49e-1

QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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East Asian
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allele num: 8654
num of homozygotes: 0

South Asian
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allele frequency: 6.056935190793458e-5
allele num: 16510
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

Other
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allele num: 906
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
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ClippingRankSum
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InbreedingCoeff
type: SiteQuality
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MQRankSum
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.49e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.195e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.88e-1

FS
type: SiteQuality
SIO_000300: 2.168e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

MQ
type: SiteQuality
SIO_000300: 5.922e1

DP
type: SiteQuality
SIO_000300: 1.500339e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.39e-1

QD
type: SiteQuality
SIO_000300: 8.300000000000001e0

GenotypeQuality
all individuals: 886
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 7084
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.02e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.207e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.1e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.6e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.15e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.08e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.499978e6

QD
type: SiteQuality
SIO_000300: 1.153e1

GenotypeQuality
all individuals: 49
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 25
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.900000000000001e-3

FS
type: SiteQuality
SIO_000300: 1.722e0

DP
type: SiteQuality
SIO_000300: 1.499242e6

MQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.65e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

VQSLOD
type: SiteQuality
SIO_000300: 9.429999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e0

QD
type: SiteQuality
SIO_000300: 1.274e1

GenotypeQuality
all individuals: 103
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3215
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variant carriers: 0

GenotypeQuality
all individuals: 1800
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variant carriers: 2

GenotypeQuality
all individuals: 40730
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2748
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variant carriers: 0

GenotypeQuality
all individuals: 2137
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.312138728323699e-4
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66664
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.296e1

MQRankSum
type: SiteQuality
SIO_000300: -6.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.29e-1

DP
type: SiteQuality
SIO_000300: 1.494588e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

FS
type: SiteQuality
SIO_000300: 6.97e-1

MQ
type: SiteQuality
SIO_000300: 5.921e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.99e-1

GenotypeQuality
all individuals: 825
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1831
bin: 9.75e1
variant carriers: 32

GenotypeQuality
all individuals: 3213
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
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variant carriers: 0

GenotypeQuality
all individuals: 6955
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variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
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variant carriers: 0

GenotypeQuality
all individuals: 102
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variant carriers: 0

GenotypeQuality
all individuals: 141
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variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 23
allele frequency: 3.450241516906183e-4
allele num: 66662
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 6.912044237083118e-4
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.448e0

QD
type: SiteQuality
SIO_000300: 1.48e1

MQRankSum
type: SiteQuality
SIO_000300: 2.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.0e0

DP
type: SiteQuality
SIO_000300: 1.496001e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.08e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.85e0

GenotypeQuality
all individuals: 151
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3218
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40773
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2140
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1817
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5001500150015e-5
allele num: 66660
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.49538e6

VQSLOD
type: SiteQuality
SIO_000300: 2.99e0

MQRankSum
type: SiteQuality
SIO_000300: 2.08e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

FS
type: SiteQuality
SIO_000300: 7.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e-1

QD
type: SiteQuality
SIO_000300: 8.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.428e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e-2

GenotypeQuality
all individuals: 370
bin: 8.75e1
variant carriers: 61

GenotypeQuality
all individuals: 110
bin: 3.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1206
bin: 7.25e1
variant carriers: 60

GenotypeQuality
all individuals: 65
bin: 3.75e1
variant carriers: 10

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 19

GenotypeQuality
all individuals: 955
bin: 8.25e1
variant carriers: 115

GenotypeQuality
all individuals: 3210
bin: 6.75e1
variant carriers: 68

GenotypeQuality
all individuals: 335
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variant carriers: 1

GenotypeQuality
all individuals: 19806
bin: 6.25e1
variant carriers: 43

GenotypeQuality
all individuals: 32454
bin: 9.75e1
variant carriers: 31901

South Asian
type: Population
allele count: 7012
allele frequency: 4.278740541859897e-1
allele num: 16388
num of homozygotes: 1498

Other
type: Population
allele count: 296
allele frequency: 3.267108167770419e-1
allele num: 906
num of homozygotes: 63

African
type: Population
allele count: 3194
allele frequency: 3.073518090839107e-1
allele num: 10392
num of homozygotes: 501

East Asian
type: Population
allele count: 3098
allele frequency: 3.591467655923951e-1
allele num: 8626
num of homozygotes: 560

European (Non-Finnish)
type: Population
allele count: 20551
allele frequency: 3.083883553421369e-1
allele num: 66640
num of homozygotes: 3166

European (Finnish)
type: Population
allele count: 1872
allele frequency: 2.832072617246596e-1
allele num: 6610
num of homozygotes: 251

Latino
type: Population
allele count: 2985
allele frequency: 2.581733264141152e-1
allele num: 11562
num of homozygotes: 398

BaseQRankSum
type: SiteQuality
SIO_000300: 3.46e0

MQRankSum
type: SiteQuality
SIO_000300: 9.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

QD
type: SiteQuality
SIO_000300: 1.918e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.93e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.9357e6

MQ
type: SiteQuality
SIO_000300: 5.969e1

VQSLOD
type: SiteQuality
SIO_000300: 4.15e0

GenotypeQuality
all individuals: 1461
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6240
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 13102
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variant carriers: 1

GenotypeQuality
all individuals: 297
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variant carriers: 0

GenotypeQuality
all individuals: 137
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variant carriers: 0

GenotypeQuality
all individuals: 2455
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GenotypeQuality
all individuals: 2478
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3719
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16126
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.015592e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.94e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e-1

QD
type: SiteQuality
SIO_000300: 1.389e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.62e0

GenotypeQuality
all individuals: 2439
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
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GenotypeQuality
all individuals: 13110
bin: 9.75e1
variant carriers: 41

GenotypeQuality
all individuals: 81
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variant carriers: 0

GenotypeQuality
all individuals: 222
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variant carriers: 0

GenotypeQuality
all individuals: 6155
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25914
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

African
type: Population
allele count: 40
allele frequency: 3.851338340073176e-3
allele num: 10386
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16044
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66522
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.999999999999999e-3

MQ
type: SiteQuality
SIO_000300: 5.972e1

FS
type: SiteQuality
SIO_000300: 1.594e0

VQSLOD
type: SiteQuality
SIO_000300: 3.29e0

MQRankSum
type: SiteQuality
SIO_000300: 6.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.72e-1

QD
type: SiteQuality
SIO_000300: 1.85e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.486e0

DP
type: SiteQuality
SIO_000300: 2.008726e6

GenotypeQuality
all individuals: 31
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1522
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3669
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13081
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GenotypeQuality
all individuals: 2414
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2474
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1456
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15948
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504030802550836e-5
allele num: 66488
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.42e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.64e0

VQSLOD
type: SiteQuality
SIO_000300: -8.419e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.87e0

DP
type: SiteQuality
SIO_000300: 1.989988e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

QD
type: SiteQuality
SIO_000300: 1.703e1

GenotypeQuality
all individuals: 723
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3573
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 247
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 145
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2418
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 14120
bin: 9.75e1
variant carriers: 1417

GenotypeQuality
all individuals: 1726
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 911
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2994
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 89
bin: 5.75e1
variant carriers: 1

Other
type: Population
allele count: 5
allele frequency: 5.580357142857143e-3
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 1412
allele frequency: 1.363460795674006e-1
allele num: 10356
num of homozygotes: 95

Latino
type: Population
allele count: 80
allele frequency: 6.920415224913495e-3
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 3.614022406938923e-4
allele num: 66408
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.341154090044388e-4
allele num: 15770
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.8e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.669e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.96e0

DP
type: SiteQuality
SIO_000300: 1.997429e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.78e0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3074
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3671
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5650
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1473
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.519297399897563e-5
allele num: 66382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15696
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.554e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.05e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

MQRankSum
type: SiteQuality
SIO_000300: 9.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.91e-1

FS
type: SiteQuality
SIO_000300: 4.442e0

DP
type: SiteQuality
SIO_000300: 1.97143e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e-2

GenotypeQuality
all individuals: 1574
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2480
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5049
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3035
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 13290
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1650
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2313
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.537067844287831e-5
allele num: 66122
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.732201628269531e-4
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15062
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.298e1

FS
type: SiteQuality
SIO_000300: 1.421e0

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.98e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.25e-1

DP
type: SiteQuality
SIO_000300: 1.950144e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.293e0

GenotypeQuality
all individuals: 8402
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2567
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1566
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1780
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1528
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2399
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3180
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3011
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5845
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3654
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522116350573838e-5
allele num: 65698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14880
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.795e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.86e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.45e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.637e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.97e-1

DP
type: SiteQuality
SIO_000300: 2.18618e6

QD
type: SiteQuality
SIO_000300: 1.414e1

VQSLOD
type: SiteQuality
SIO_000300: -1.593e0

GenotypeQuality
all individuals: 5966
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2412
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1785
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1976
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14064
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2556
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3020
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1044
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9263
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1573
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.684491978609626e-5
allele num: 14960
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.59e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.059e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.188974e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.593e-1

QD
type: SiteQuality
SIO_000300: 9.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.482e0

GenotypeQuality
all individuals: 77
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1005
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2601
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1070
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11886
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1818
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2029
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1507
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4397
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15044
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517865274278255e-5
allele num: 65882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.27e-1

FS
type: SiteQuality
SIO_000300: 9.89e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.69e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.284e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.91e-1

DP
type: SiteQuality
SIO_000300: 2.210862e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

QD
type: SiteQuality
SIO_000300: 3.96e0

MQ
type: SiteQuality
SIO_000300: 5.79e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

GenotypeQuality
all individuals: 36
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3871
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1863
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6555
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 853
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2653
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.932367149758454e-4
allele num: 10350
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65990
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.07e0

DP
type: SiteQuality
SIO_000300: 2.248533e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 7.037e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.71e-1

QD
type: SiteQuality
SIO_000300: 1.795e1

VQSLOD
type: SiteQuality
SIO_000300: 3.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.13e-1

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4022
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14139
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6896
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2716
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.121076233183856e-3
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66242
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.216e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.62e-1

FS
type: SiteQuality
SIO_000300: 8.212999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.38e-1

DP
type: SiteQuality
SIO_000300: 2.286938e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.958e1

VQSLOD
type: SiteQuality
SIO_000300: 6.929999999999999e-1

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4826
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2734
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7103
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14160
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1936
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3376
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21391
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16062
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.092e0

MQ
type: SiteQuality
SIO_000300: 5.77e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.93e-1

QD
type: SiteQuality
SIO_000300: 1.537e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.311045e6

MQRankSum
type: SiteQuality
SIO_000300: 7.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.41e-1

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3394
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14170
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2740
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4072
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728907330567082e-4
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16390
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66624
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.183e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.49e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

FS
type: SiteQuality
SIO_000300: 3.06e0

DP
type: SiteQuality
SIO_000300: 2.320182e6

QD
type: SiteQuality
SIO_000300: 1.266e1

MQRankSum
type: SiteQuality
SIO_000300: -2.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.385e0

GenotypeQuality
all individuals: 18
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14172
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66662
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.113e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.26e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.322867e6

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.74e-1

QD
type: SiteQuality
SIO_000300: 1.202e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.25e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2739
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4852
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499745043342632e-5
allele num: 66678
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.197e1

FS
type: SiteQuality
SIO_000300: 1.098e0

MQRankSum
type: SiteQuality
SIO_000300: 1.5e0

DP
type: SiteQuality
SIO_000300: 2.323428e6

VQSLOD
type: SiteQuality
SIO_000300: -9.792999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.622e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.419e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 7

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7177
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.240882103477523e-4
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 5.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.43e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.94e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.72e-1

DP
type: SiteQuality
SIO_000300: 2.323801e6

QD
type: SiteQuality
SIO_000300: 1.41e1

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3402
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1940
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variant carriers: 0

GenotypeQuality
all individuals: 14178
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66696
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.380000000000001e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.764e0

DP
type: SiteQuality
SIO_000300: 2.324096e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.75e-1

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7182
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 4855
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1939
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4073
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.937e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQRankSum
type: SiteQuality
SIO_000300: -8.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.27e-1

FS
type: SiteQuality
SIO_000300: 9.25e-1

DP
type: SiteQuality
SIO_000300: 2.324152e6

QD
type: SiteQuality
SIO_000300: 1.183e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.57e0

GenotypeQuality
all individuals: 24
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3400
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4075
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49907057624273e-5
allele num: 66708
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.792e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e0

VQSLOD
type: SiteQuality
SIO_000300: -2.188e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.845e1

DP
type: SiteQuality
SIO_000300: 2.324308e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.303e0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.76e0

DP
type: SiteQuality
SIO_000300: 2.324408e6

MQ
type: SiteQuality
SIO_000300: 5.929e1

FS
type: SiteQuality
SIO_000300: 5.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.3e-2

QD
type: SiteQuality
SIO_000300: 2.668e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.18e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.69e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.416e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49907057624273e-5
allele num: 66708
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.117e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.1e-2

FS
type: SiteQuality
SIO_000300: 5.208e0

DP
type: SiteQuality
SIO_000300: 2.324341e6

VQSLOD
type: SiteQuality
SIO_000300: -2.067e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.008e0

DP
type: SiteQuality
SIO_000300: 2.324311e6

FS
type: SiteQuality
SIO_000300: 2.66e0

MQRankSum
type: SiteQuality
SIO_000300: -5.9e-2

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.1e-1

MQ
type: SiteQuality
SIO_000300: 5.794e1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.849e0

GenotypeQuality
all individuals: 26
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4074
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4853
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1938
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2738
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14182
bin: 9.75e1
variant carriers: 3

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727712508638562e-4
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.11e1

MQRankSum
type: SiteQuality
SIO_000300: 3.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.625e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.32e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

FS
type: SiteQuality
SIO_000300: 4.051e0

DP
type: SiteQuality
SIO_000300: 2.324774e6

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7183
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.963e1

DP
type: SiteQuality
SIO_000300: 2.324774e6

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

QD
type: SiteQuality
SIO_000300: 1.11e1

FS
type: SiteQuality
SIO_000300: 4.051e0

MQRankSum
type: SiteQuality
SIO_000300: 3.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.625e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.32e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 1398
allele frequency: 1.343455698635403e-1
allele num: 10406
num of homozygotes: 91

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 24
allele frequency: 3.597877252421072e-4
allele num: 66706
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 5.506607929515419e-3
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.056935190793458e-4
allele num: 16510
num of homozygotes: 1

Latino
type: Population
allele count: 81
allele frequency: 6.996026947659354e-3
allele num: 11578
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.462207e6

MQRankSum
type: SiteQuality
SIO_000300: 1.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.018e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e-2

QD
type: SiteQuality
SIO_000300: 1.359e1

MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 7081
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 13
allele frequency: 1.122819139747797e-3
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.49734656552634e-5
allele num: 66706
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.48e0

VQSLOD
type: SiteQuality
SIO_000300: 4.93e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.336e1

MQRankSum
type: SiteQuality
SIO_000300: -4.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e-1

DP
type: SiteQuality
SIO_000300: 2.371214e6

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49907057624273e-5
allele num: 66708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.752e0

QD
type: SiteQuality
SIO_000300: 1.156e1

MQRankSum
type: SiteQuality
SIO_000300: -5.639999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

FS
type: SiteQuality
SIO_000300: 2.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.46e-1

DP
type: SiteQuality
SIO_000300: 2.370449e6

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1937
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2737
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variant carriers: 0

GenotypeQuality
all individuals: 4021
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.231e1

FS
type: SiteQuality
SIO_000300: 6.568e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.44e0

VQSLOD
type: SiteQuality
SIO_000300: 8.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.29e-1

DP
type: SiteQuality
SIO_000300: 2.37033e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.94e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

MQRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.929999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.274e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.370386e6

GenotypeQuality
all individuals: 4020
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7078
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.370462e6

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.989e1

MQRankSum
type: SiteQuality
SIO_000300: 1.39e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.284e0

VQSLOD
type: SiteQuality
SIO_000300: -2.177e-1

QD
type: SiteQuality
SIO_000300: 1.166e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
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allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998231043684226e-5
allele num: 66706
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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Latino
type: Population
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num of homozygotes: 0

African
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 9.97e-1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.981e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.234e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.97e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

DP
type: SiteQuality
SIO_000300: 2.370466e6

VQSLOD
type: SiteQuality
SIO_000300: 8.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.213e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e-1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21846
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7072
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2737
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1937
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3348
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14832
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

FS
type: SiteQuality
SIO_000300: 2.185e0

DP
type: SiteQuality
SIO_000300: 2.369952e6

MQ
type: SiteQuality
SIO_000300: 5.919e1

VQSLOD
type: SiteQuality
SIO_000300: 6.65e-1

QD
type: SiteQuality
SIO_000300: 1.475e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

GenotypeQuality
all individuals: 4021
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2737
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4793
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.369891e6

FS
type: SiteQuality
SIO_000300: 6.830000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.86e-1

QD
type: SiteQuality
SIO_000300: 1.2e1

MQRankSum
type: SiteQuality
SIO_000300: 4.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.35e-1

GenotypeQuality
all individuals: 33
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2735
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14871
bin: 9.75e1
variant carriers: 74

GenotypeQuality
all individuals: 1934
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7055
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

African
type: Population
allele count: 73
allele frequency: 7.015183547953104e-3
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-2

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.24e-1

DP
type: SiteQuality
SIO_000300: 2.37343e6

MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

FS
type: SiteQuality
SIO_000300: 1.934e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.48e-2

QD
type: SiteQuality
SIO_000300: 1.311e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e0

VQSLOD
type: SiteQuality
SIO_000300: 3.79e0

GenotypeQuality
all individuals: 4791
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14848
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3341
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4023
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.498965237995261e-5
allele num: 66682
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.278e1

MQ
type: SiteQuality
SIO_000300: 5.965e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.89e-1

DP
type: SiteQuality
SIO_000300: 2.370416e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.73e0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7057
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4791
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4023
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2737
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

South Asian
type: Population
allele count: 15
allele frequency: 9.106362311801845e-4
allele num: 16472
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.76e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.73e0

QD
type: SiteQuality
SIO_000300: 1.278e1

DP
type: SiteQuality
SIO_000300: 2.370416e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.44e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

MQRankSum
type: SiteQuality
SIO_000300: 3.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3