3-10128946-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10128946
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10128946
    reference: chr 3
allele count: 2
allele frequency: 1.648750247312537e-5
allele num: 121304
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3464T>A
  hgvsp: ENSP00000373317.1:p.Ile1155Asn
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-5731A>T
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-22A>T
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-22A>T
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3464T>A
  hgvsp: ENSP00000373318.1:p.Ile1155Asn
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3464T>A
  hgvsp: ENSP00000398754.1:p.Ile1155Asn
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1963T>A
  hgvsp: ENSP00000389936.1:p.Ile655Asn
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3464T>A
  hgvsp: ENSP00000287647.3:p.Ile1155Asn
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 5075
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7090
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8378
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3094
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11261
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10913
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28978
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3521
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ile1155Asn
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

3-10128946-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10128946
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10128946
    reference: chr 3
allele count: 1
allele frequency: 8.243751236562685e-6
allele num: 121304
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-5731A>G
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-22A>G
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3464T>C
  hgvsp: ENSP00000373318.1:p.Ile1155Thr
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3464T>C
  hgvsp: ENSP00000287647.3:p.Ile1155Thr
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3464T>C
  hgvsp: ENSP00000373317.1:p.Ile1155Thr
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1963T>C
  hgvsp: ENSP00000389936.1:p.Ile655Thr
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3464T>C
  hgvsp: ENSP00000398754.1:p.Ile1155Thr
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-22A>G
  variant of: http://identifiers.org/hgnc/28623
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 11261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3094
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8378
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10913
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7090
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5075
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6158
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3737
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ile1155Thr
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

3-10128957-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10128957
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10128957
    reference: chr 3
allele count: 2
allele frequency: 1.676221127091086e-5
allele num: 119316
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3466+9C>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3466+9C>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-33G>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-33G>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-5742G>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3466+9C>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3466+9C>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1965+9C>G
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4517
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6510
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6822
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5978
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2267
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18328
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2211
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8902
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2680
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

3-10128958-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10128958
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10128958
    reference: chr 3
allele count: 23
allele frequency: 1.94378243158731e-4
allele num: 118326
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-34G>A
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3466+10C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1965+10C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-34G>A
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3466+10C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-5743G>A
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3466+10C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3466+10C>T
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6060
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8503
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4048
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6443
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5602
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6005
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2514
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15467
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7234
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

3-10128963-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10128963
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10128963
    reference: chr 3
allele count: 2
allele frequency: 2.148920167615773e-5
allele num: 93070
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-39A>G
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-39A>G
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3466+15T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3466+15T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3466+15T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-5748A>G
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3466+15T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1965+15T>C
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4075
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9651
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7668
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3053
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5073
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1925
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5674
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4975
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7774
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1359
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5460
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 10577
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

3-10128964-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10128964
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10128964
    reference: chr 3
allele count: 1
allele frequency: 1.186802753382388e-5
allele num: 84260
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3466+16C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3466+16C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-40G>A
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-5749G>A
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3466+16C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1965+16C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-40G>A
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3466+16C>T
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4284
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7279
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9596
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4917
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2742
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6972
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4542
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4688
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6583
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2632
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

3-10128965-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10128965
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10128966
    reference: chr 3
allele count: 1498
allele frequency: 3.901041666666667e-2
allele num: 38400
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-42dupA
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3466+36dupT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-5751dupA
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3466+36dupT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3466+36dupT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-42dupA
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3466+36dupT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1965+36dupT
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 2.5e0
  variant carriers: 582
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 5.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8413
  bin: 2.25e1
  variant carriers: 394
genotype depth: GenotypeDepth
  all individuals: 8688
  bin: 7.5e0
  variant carriers: 1370
genotype depth: GenotypeDepth
  all individuals: 7988
  bin: 1.75e1
  variant carriers: 426
genotype depth: GenotypeDepth
  all individuals: 9062
  bin: 1.25e1
  variant carriers: 740
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 4.25e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 3.75e1
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 6630
  bin: 3.25e1
  variant carriers: 183
genotype depth: GenotypeDepth
  all individuals: 8232
  bin: 2.75e1
  variant carriers: 327
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 4.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 6.75e1
  variant carriers: 61
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 8.25e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 3730
  bin: 2.25e1
  variant carriers: 352
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 7.75e1
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 24056
  bin: 2.5e0
  variant carriers: 547
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 5.25e1
  variant carriers: 110
genotype quality: GenotypeQuality
  all individuals: 1987
  bin: 4.25e1
  variant carriers: 214
genotype quality: GenotypeQuality
  all individuals: 2328
  bin: 3.75e1
  variant carriers: 244
num of homozygotes: 55
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

3-10128965-C-CTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10128965
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10128967
    reference: chr 3
allele count: 885
allele frequency: 2.3046875e-2
allele num: 38400
alternate allele: CTT
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1965+35_1965+36dupTT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-43_96-42dupAA
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3466+35_3466+36dupTT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3466+35_3466+36dupTT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-5752_*44-5751dupAA
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3466+35_3466+36dupTT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3466+35_3466+36dupTT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-43_117-42dupAA
  variant of: http://identifiers.org/hgnc/28623
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8688
  bin: 7.5e0
  variant carriers: 553
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 2.5e0
  variant carriers: 328
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 3.75e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8413
  bin: 2.25e1
  variant carriers: 151
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 4.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 9062
  bin: 1.25e1
  variant carriers: 364
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 7988
  bin: 1.75e1
  variant carriers: 224
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8232
  bin: 2.75e1
  variant carriers: 153
genotype depth: GenotypeDepth
  all individuals: 6630
  bin: 3.25e1
  variant carriers: 114
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 4.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4775
  bin: 7.5e0
  variant carriers: 176
genotype quality: GenotypeQuality
  all individuals: 2552
  bin: 3.25e1
  variant carriers: 130
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 6.75e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 1987
  bin: 4.25e1
  variant carriers: 104
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 9.25e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 24056
  bin: 2.5e0
  variant carriers: 190
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 7.25e1
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 7.75e1
  variant carriers: 36
num of homozygotes: 49
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum

3-10128965-C-CTTTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10128965
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10128969
    reference: chr 3
allele count: 105
allele frequency: 2.734375e-3
allele num: 38400
alternate allele: CTTTT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-45_117-42dupAAAA
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3466+33_3466+36dupTTTT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3466+33_3466+36dupTTTT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3466+33_3466+36dupTTTT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-45_96-42dupAAAA
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-5754_*44-5751dupAAAA
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1965+33_1965+36dupTTTT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3466+33_3466+36dupTTTT
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8688
  bin: 7.5e0
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 4.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9062
  bin: 1.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 8232
  bin: 2.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8413
  bin: 2.25e1
  variant carriers: 134
genotype depth: GenotypeDepth
  all individuals: 7988
  bin: 1.75e1
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 2.5e0
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6630
  bin: 3.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 3.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2552
  bin: 3.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 3152
  bin: 1.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1051
  bin: 6.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 7.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3001
  bin: 1.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 3730
  bin: 2.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 8.75e1
  variant carriers: 5
num of homozygotes: 6
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

3-10128965-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10128965
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10128964
    reference: chr 3
allele count: 8216
allele frequency: 2.139583333333333e-1
allele num: 38400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3466+36delT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1965+36delT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-42delA
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3466+36delT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-5751delA
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-42delA
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3466+36delT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3466+36delT
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 9062
  bin: 1.25e1
  variant carriers: 4187
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 3.75e1
  variant carriers: 519
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 4.75e1
  variant carriers: 191
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 2.5e0
  variant carriers: 700
genotype depth: GenotypeDepth
  all individuals: 8232
  bin: 2.75e1
  variant carriers: 986
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 4.25e1
  variant carriers: 331
genotype depth: GenotypeDepth
  all individuals: 6630
  bin: 3.25e1
  variant carriers: 825
genotype depth: GenotypeDepth
  all individuals: 8413
  bin: 2.25e1
  variant carriers: 1230
genotype depth: GenotypeDepth
  all individuals: 7988
  bin: 1.75e1
  variant carriers: 1862
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 8688
  bin: 7.5e0
  variant carriers: 5328
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 5.25e1
  variant carriers: 108
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1987
  bin: 4.25e1
  variant carriers: 1189
genotype quality: GenotypeQuality
  all individuals: 2328
  bin: 3.75e1
  variant carriers: 1304
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 6.75e1
  variant carriers: 489
genotype quality: GenotypeQuality
  all individuals: 3730
  bin: 2.25e1
  variant carriers: 1140
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 8.25e1
  variant carriers: 268
genotype quality: GenotypeQuality
  all individuals: 3001
  bin: 1.75e1
  variant carriers: 1145
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 7.25e1
  variant carriers: 404
genotype quality: GenotypeQuality
  all individuals: 1051
  bin: 6.25e1
  variant carriers: 588
num of homozygotes: 1
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: CT
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

3-10128965-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10128965
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10128963
    reference: chr 3
allele count: 4848
allele frequency: 1.2625e-1
allele num: 38400
alternate allele: C
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 4.25e1
  variant carriers: 125
genotype depth: GenotypeDepth
  all individuals: 6630
  bin: 3.25e1
  variant carriers: 282
genotype depth: GenotypeDepth
  all individuals: 7988
  bin: 1.75e1
  variant carriers: 1682
genotype depth: GenotypeDepth
  all individuals: 9062
  bin: 1.25e1
  variant carriers: 2456
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8232
  bin: 2.75e1
  variant carriers: 436
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8688
  bin: 7.5e0
  variant carriers: 1103
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8413
  bin: 2.25e1
  variant carriers: 809
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 2.5e0
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 3.75e1
  variant carriers: 190
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 5.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 4.75e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24056
  bin: 2.5e0
  variant carriers: 424
genotype quality: GenotypeQuality
  all individuals: 3001
  bin: 1.75e1
  variant carriers: 428
genotype quality: GenotypeQuality
  all individuals: 1279
  bin: 5.75e1
  variant carriers: 294
genotype quality: GenotypeQuality
  all individuals: 3730
  bin: 2.25e1
  variant carriers: 372
genotype quality: GenotypeQuality
  all individuals: 3152
  bin: 1.25e1
  variant carriers: 391
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 6.75e1
  variant carriers: 417
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 8.75e1
  variant carriers: 231
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 8.25e1
  variant carriers: 232
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 7.75e1
  variant carriers: 288
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 7.25e1
  variant carriers: 305
genotype quality: GenotypeQuality
  all individuals: 2628
  bin: 2.75e1
  variant carriers: 339
genotype quality: GenotypeQuality
  all individuals: 4775
  bin: 7.5e0
  variant carriers: 390
genotype quality: GenotypeQuality
  all individuals: 1767
  bin: 4.75e1
  variant carriers: 355
genotype quality: GenotypeQuality
  all individuals: 2328
  bin: 3.75e1
  variant carriers: 372
genotype quality: GenotypeQuality
  all individuals: 1987
  bin: 4.25e1
  variant carriers: 345
genotype quality: GenotypeQuality
  all individuals: 1051
  bin: 6.25e1
  variant carriers: 319
genotype quality: GenotypeQuality
  all individuals: 2552
  bin: 3.25e1
  variant carriers: 320
genotype quality: GenotypeQuality
  all individuals: 2325
  bin: 9.75e1
  variant carriers: 901
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 9.25e1
  variant carriers: 259
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 5.25e1
  variant carriers: 316
num of homozygotes: 0
population: Other
  type: Population
  allele count: 49
  allele frequency: 1.432748538011696e-1
  allele num: 342
  num of homozygotes: 0
population: African
  type: Population
  allele count: 201
  allele frequency: 8.244462674323216e-2
  allele num: 2438
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 874
  allele frequency: 1.152426160337553e-1
  allele num: 7584
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 465
  allele frequency: 1.726057906458797e-1
  allele num: 2694
  num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: CTT
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD

3-10128965-C-CTTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10128965
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10128968
    reference: chr 3
allele count: 631
allele frequency: 1.643229166666667e-2
allele num: 38400
alternate allele: CTTT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-5753_*44-5751dupAAA
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-44_96-42dupAAA
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3466+34_3466+36dupTTT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-44_117-42dupAAA
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1965+34_1965+36dupTTT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3466+34_3466+36dupTTT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3466+34_3466+36dupTTT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3466+34_3466+36dupTTT
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6630
  bin: 3.25e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7988
  bin: 1.75e1
  variant carriers: 147
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 4.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 4.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 5.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 8232
  bin: 2.75e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 2.5e0
  variant carriers: 131
genotype depth: GenotypeDepth
  all individuals: 8413
  bin: 2.25e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8688
  bin: 7.5e0
  variant carriers: 259
genotype depth: GenotypeDepth
  all individuals: 9062
  bin: 1.25e1
  variant carriers: 209
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 3.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2328
  bin: 3.75e1
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 3152
  bin: 1.25e1
  variant carriers: 88
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 9.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 2552
  bin: 3.25e1
  variant carriers: 75
genotype quality: GenotypeQuality
  all individuals: 1987
  bin: 4.25e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 1767
  bin: 4.75e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 6.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 4775
  bin: 7.5e0
  variant carriers: 70
num of homozygotes: 39
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff

3-10128968-T-TCAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10128968
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10128971
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 80866
alternate allele: TCAG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3466+20_3466+21insCAG
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3466+20_3466+21insCAG
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-45_117-44insCTG
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-5754_*44-5753insCTG
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3466+20_3466+21insCAG
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1965+20_1965+21insCAG
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3466+20_3466+21insCAG
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-45_96-44insCTG
  variant of: http://identifiers.org/hgnc/28623
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 7205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3117
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5315
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5468
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6905
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6637
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5990
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1732
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4653
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10152
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1702
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7660
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3785
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

3-10128973-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10128973
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10128973
    reference: chr 3
allele count: 1
allele frequency: 8.850497397953764e-6
allele num: 112988
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-49A>G
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3466+25T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-5758A>G
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3466+25T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-49A>G
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1965+25T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3466+25T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3466+25T>C
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7544
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5487
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7485
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4854
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9888
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12676
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3773
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1784
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17563
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3556
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6690
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

3-10128980-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10128980
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10128980
    reference: chr 3
allele count: 1
allele frequency: 8.92968763952637e-6
allele num: 111986
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-56A>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3466+32T>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1965+32T>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3466+32T>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-5765A>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3466+32T>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-56A>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3466+32T>G
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5942
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8474
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9815
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8650
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8677
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3976
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1890
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12634
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2096
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

3-10128984-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10128984
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10128984
    reference: chr 3
allele count: 2
allele frequency: 2.088336639866346e-5
allele num: 95770
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-60A>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-60A>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-5769A>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3466+36T>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3466+36T>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3466+36T>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1965+36T>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3466+36T>G
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10982
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6364
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9613
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5999
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9261
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4765
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1570
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4122
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1732
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2900
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1337
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

3-10128984-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10128984
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10128985
    reference: chr 3
allele count: 3
allele frequency: 3.132504959799519e-5
allele num: 95770
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-61dupT
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-61dupT
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3466+38dupA
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3466+38dupA
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3466+38dupA
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3466+38dupA
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-5770dupT
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1965+38dupA
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6364
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5999
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10982
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9613
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1536
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4765
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1732
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2887
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1570
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8331
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD

3-10128986-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10128986
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10128986
    reference: chr 3
allele count: 3
allele frequency: 3.37997701615629e-5
allele num: 88758
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-5771T>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-62T>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3466+38A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3466+38A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3466+38A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3466+38A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-62T>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1965+38A>G
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12655
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4068
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8547
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5268
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11655
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4303
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3336
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4801
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7783
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1449
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1542
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

3-10128999-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10128999
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10128999
    reference: chr 3
allele count: 1
allele frequency: 1.007841003003366e-5
allele num: 99222
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-75T>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-5784T>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3466+51A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1965+51A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3466+51A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3466+51A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-75T>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3466+51A>G
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12975
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7352
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8676
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13000
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10764
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4779
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2975
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5766
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2694
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2583
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6263
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

3-10129000-T-TCAGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10129000
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10129004
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 98660
alternate allele: TCAGA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3466+52_3466+53insCAGA
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-5786_*44-5785insTCTG
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-77_117-76insTCTG
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3466+52_3466+53insCAGA
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3466+52_3466+53insCAGA
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3466+52_3466+53insCAGA
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1965+52_1965+53insCAGA
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-77_96-76insTCTG
  variant of: http://identifiers.org/hgnc/28623
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12974
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7361
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4586
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12993
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8731
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4805
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1129
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2568
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3350
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2926
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10054
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5066
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

3-10130083-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130083
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130083
    reference: chr 3
allele count: 19
allele frequency: 1.565589980224127e-4
allele num: 121360
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1159T>A
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1966-50A>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3467-50A>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3467-50A>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3467-50A>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3467-50A>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1159T>A
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-6868T>A
  variant of: http://identifiers.org/hgnc/28623
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25244
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2059
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2499
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8178
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

3-10130089-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130089
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130089
    reference: chr 3
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1966-44T>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1165A>T
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-6874A>T
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3467-44T>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3467-44T>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3467-44T>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1165A>T
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3467-44T>A
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13316
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1453
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2046
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2430
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/3-10130091-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130091
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130091
    reference: chr 3
allele count: 2
allele frequency: 1.647772211969417e-5
allele num: 121376
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1966-42A>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3467-42A>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1167T>G
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3467-42A>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1167T>G
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-6876T>G
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3467-42A>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3467-42A>C
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5989
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2041
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32873
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD

3-10130097-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130097
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130097
    reference: chr 3
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1173G>A
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1966-36C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3467-36C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1173G>A
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3467-36C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3467-36C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-6882G>A
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3467-36C>T
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13305
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3326
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33042
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8156
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

3-10130098-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130098
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130098
    reference: chr 3
allele count: 6
allele frequency: 4.94323518265254e-5
allele num: 121378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1174G>A
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3467-35C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3467-35C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3467-35C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1174G>A
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-6883G>A
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1966-35C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3467-35C>T
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13311
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25389
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3324
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33072
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12016
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1434
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

3-10130099-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130099
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130099
    reference: chr 3
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3467-34A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1175T>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-6884T>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1175T>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3467-34A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1966-34A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3467-34A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3467-34A>G
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13307
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3322
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33079
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

3-10130107-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130107
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130107
    reference: chr 3
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3467-26G>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1966-26G>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3467-26G>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3467-26G>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1183C>T
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1183C>T
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-6892C>T
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3467-26G>A
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25432
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

3-10130108-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130108
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130108
    reference: chr 3
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-6893T>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3467-25A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3467-25A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1184T>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3467-25A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3467-25A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1966-25A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1184T>C
  variant of: http://identifiers.org/hgnc/28623
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13315
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6068
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25435
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12010
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2402
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

3-10130118-CTTCTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130118
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130113
    reference: chr 3
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3467-10_3467-6delTTTCT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1199_96-1195delAAGAA
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1199_117-1195delAAGAA
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3467-10_3467-6delTTTCT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3467-10_3467-6delTTTCT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-6908_*44-6904delAAGAA
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1966-10_1966-6delTTTCT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3467-10_3467-6delTTTCT
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1429
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2401
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: CTTCTT
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

3-10130121-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130121
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130121
    reference: chr 3
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1197G>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3467-12C>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3467-12C>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-6906G>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1966-12C>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3467-12C>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1197G>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3467-12C>G
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6067
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13313
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25456
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12006
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-10130138-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130138
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130138
    reference: chr 3
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1214G>A
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-6923G>A
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3472C>T
  hgvsp: ENSP00000287647.3:p.Leu1158Phe
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3472C>T
  hgvsp: ENSP00000373318.1:p.Leu1158Phe
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3472C>T
  hgvsp: ENSP00000373317.1:p.Leu1158Phe
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3472C>T
  hgvsp: ENSP00000398754.1:p.Leu1158Phe
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1214G>A
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1971C>T
  hgvsp: ENSP00000389936.1:p.Leu658Phe
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6070
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25465
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2855
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8158
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12005
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Leu1158Phe
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/3-10130147-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130147
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130148
    reference: chr 3
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-6933dupT
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1224dupT
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3483dupA
  hgvsp: ENSP00000287647.3:p.Phe1162IlefsTer11
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3483dupA
  hgvsp: ENSP00000373318.1:p.Phe1162IlefsTer11
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3483dupA
  hgvsp: ENSP00000398754.1:p.Phe1162IlefsTer11
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3483dupA
  hgvsp: ENSP00000373317.1:p.Phe1162IlefsTer11
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1982dupA
  hgvsp: ENSP00000389936.1:p.Phe662IlefsTer11
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1224dupT
  variant of: http://identifiers.org/hgnc/28623
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25465
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6074
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2402
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33264
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Phe1162IlefsTer11
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

3-10130147-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130147
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130147
    reference: chr 3
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1223G>A
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3481C>T
  hgvsp: ENSP00000373318.1:p.Gln1161Ter
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1980C>T
  hgvsp: ENSP00000389936.1:p.Gln661Ter
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1223G>A
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3481C>T
  hgvsp: ENSP00000398754.1:p.Gln1161Ter
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3481C>T
  hgvsp: ENSP00000287647.3:p.Gln1161Ter
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3481C>T
  hgvsp: ENSP00000373317.1:p.Gln1161Ter
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-6932G>A
  variant of: http://identifiers.org/hgnc/28623
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25465
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6074
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8157
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33264
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gln1161Ter
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-10130149-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130149
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130149
    reference: chr 3
allele count: 8
allele frequency: 6.589351607801793e-5
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1982A>G
  hgvsp: ENST00000421731.1:c.1982A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1225T>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3483A>G
  hgvsp: ENST00000383806.1:c.3483A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1225T>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3483A>G
  hgvsp: ENST00000383807.1:c.3483A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3483A>G
  hgvsp: ENST00000419585.1:c.3483A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-6934T>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3483A>G
  hgvsp: ENST00000287647.3:c.3483A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3315
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6073
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gln1161Gln
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum

3-10130149-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130149
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130149
    reference: chr 3
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-6934T>A
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1225T>A
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3483A>T
  hgvsp: ENSP00000287647.3:p.Gln1161His
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1982A>T
  hgvsp: ENSP00000389936.1:p.Gln661His
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3483A>T
  hgvsp: ENSP00000373318.1:p.Gln1161His
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1225T>A
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3483A>T
  hgvsp: ENSP00000373317.1:p.Gln1161His
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3483A>T
  hgvsp: ENSP00000398754.1:p.Gln1161His
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6073
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3315
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2026
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8157
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gln1161His
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

3-10130154-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130154
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130154
    reference: chr 3
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3488T>C
  hgvsp: ENSP00000373317.1:p.Leu1163Pro
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3488T>C
  hgvsp: ENSP00000398754.1:p.Leu1163Pro
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1987T>C
  hgvsp: ENSP00000389936.1:p.Leu663Pro
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3488T>C
  hgvsp: ENSP00000373318.1:p.Leu1163Pro
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-6939A>G
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1230A>G
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1230A>G
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3488T>C
  hgvsp: ENSP00000287647.3:p.Leu1163Pro
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13318
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3317
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2025
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8158
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu1163Pro
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

3-10130155-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130155
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130155
    reference: chr 3
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3489C>G
  hgvsp: ENST00000287647.3:c.3489C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1231G>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3489C>G
  hgvsp: ENST00000419585.1:c.3489C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1988C>G
  hgvsp: ENST00000421731.1:c.1988C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3489C>G
  hgvsp: ENST00000383806.1:c.3489C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3489C>G
  hgvsp: ENST00000383807.1:c.3489C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-6940G>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1231G>C
  variant of: http://identifiers.org/hgnc/28623
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6072
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13320
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2024
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12000
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu1163Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

3-10130159-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130159
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130159
    reference: chr 3
allele count: 3
allele frequency: 2.471047559428694e-5
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3493C>T
  hgvsp: ENSP00000398754.1:p.Arg1165Trp
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1992C>T
  hgvsp: ENSP00000389936.1:p.Arg665Trp
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-6944G>A
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3493C>T
  hgvsp: ENSP00000287647.3:p.Arg1165Trp
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1235G>A
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3493C>T
  hgvsp: ENSP00000373318.1:p.Arg1165Trp
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1235G>A
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3493C>T
  hgvsp: ENSP00000373317.1:p.Arg1165Trp
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3316
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25469
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6072
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12002
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg1165Trp
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

3-10130160-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130160
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130160
    reference: chr 3
allele count: 19
allele frequency: 1.564996787638173e-4
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1236C>T
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3494G>A
  hgvsp: ENSP00000373318.1:p.Arg1165Gln
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-6945C>T
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3494G>A
  hgvsp: ENSP00000287647.3:p.Arg1165Gln
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3494G>A
  hgvsp: ENSP00000373317.1:p.Arg1165Gln
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3494G>A
  hgvsp: ENSP00000398754.1:p.Arg1165Gln
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1993G>A
  hgvsp: ENSP00000389936.1:p.Arg665Gln
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1236C>T
  variant of: http://identifiers.org/hgnc/28623
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2863
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3316
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2021
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8156
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2402
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12008
  bin: 9.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg1165Gln
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-10130161-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130161
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130161
    reference: chr 3
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1237C>T
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3495G>A
  hgvsp: ENST00000383806.1:c.3495G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.1994G>A
  hgvsp: ENST00000421731.1:c.1994G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3495G>A
  hgvsp: ENST00000383807.1:c.3495G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3495G>A
  hgvsp: ENST00000287647.3:c.3495G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-6946C>T
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3495G>A
  hgvsp: ENST00000419585.1:c.3495G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1237C>T
  variant of: http://identifiers.org/hgnc/28623
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3313
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6071
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13318
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33281
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11997
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg1165Arg
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

3-10130179-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130179
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130179
    reference: chr 3
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1255A>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3513T>G
  hgvsp: ENSP00000373318.1:p.Asp1171Glu
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.2012T>G
  hgvsp: ENSP00000389936.1:p.Asp671Glu
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3513T>G
  hgvsp: ENSP00000398754.1:p.Asp1171Glu
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3513T>G
  hgvsp: ENSP00000373317.1:p.Asp1171Glu
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3513T>G
  hgvsp: ENSP00000287647.3:p.Asp1171Glu
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-6964A>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1255A>C
  variant of: http://identifiers.org/hgnc/28623
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13315
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25480
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8157
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp1171Glu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP

3-10130193-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130193
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130193
    reference: chr 3
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-6978T>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3527A>G
  hgvsp: ENSP00000287647.3:p.Asn1176Ser
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1269T>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.2026A>G
  hgvsp: ENSP00000389936.1:p.Asn676Ser
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3527A>G
  hgvsp: ENSP00000373317.1:p.Asn1176Ser
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1269T>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3527A>G
  hgvsp: ENSP00000398754.1:p.Asn1176Ser
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3527A>G
  hgvsp: ENSP00000373318.1:p.Asn1176Ser
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3313
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6057
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2858
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25480
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13316
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33276
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8154
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn1176Ser
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum

http://identifiers.org/exac.variant/3-10130197-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130197
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130197
    reference: chr 3
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3531C>A
  hgvsp: ENST00000383806.1:c.3531C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.2030C>A
  hgvsp: ENST00000421731.1:c.2030C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1273G>T
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3531C>A
  hgvsp: ENST00000287647.3:c.3531C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3531C>A
  hgvsp: ENST00000383807.1:c.3531C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3531C>A
  hgvsp: ENST00000419585.1:c.3531C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-6982G>T
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1273G>T
  variant of: http://identifiers.org/hgnc/28623
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6053
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25478
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13316
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3314
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33271
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1425
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2400
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile1177Ile
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

3-10130203-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130203
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130203
    reference: chr 3
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3537T>A
  hgvsp: ENSP00000287647.3:p.Asn1179Lys
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.2036T>A
  hgvsp: ENSP00000389936.1:p.Asn679Lys
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1279A>T
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3537T>A
  hgvsp: ENSP00000373318.1:p.Asn1179Lys
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3537T>A
  hgvsp: ENSP00000373317.1:p.Asn1179Lys
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3537T>A
  hgvsp: ENSP00000398754.1:p.Asn1179Lys
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1279A>T
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-6988A>T
  variant of: http://identifiers.org/hgnc/28623
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25481
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3314
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2400
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33264
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn1179Lys
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

3-10130204-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130204
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130204
    reference: chr 3
allele count: 6
allele frequency: 4.94266508501384e-5
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-6989C>T
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3538G>A
  hgvsp: ENSP00000373317.1:p.Asp1180Asn
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3538G>A
  hgvsp: ENSP00000398754.1:p.Asp1180Asn
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3538G>A
  hgvsp: ENSP00000373318.1:p.Asp1180Asn
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3538G>A
  hgvsp: ENSP00000287647.3:p.Asp1180Asn
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.2037G>A
  hgvsp: ENSP00000389936.1:p.Asp680Asn
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1280C>T
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1280C>T
  variant of: http://identifiers.org/hgnc/28623
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3313
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2858
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2018
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8145
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11993
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1426
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp1180Asn
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

3-10130209-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130209
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130209
    reference: chr 3
allele count: 2
allele frequency: 1.647717910693689e-5
allele num: 121380
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3543G>A
  hgvsp: ENST00000287647.3:c.3543G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3543G>A
  hgvsp: ENST00000383807.1:c.3543G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1285C>T
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-6994C>T
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3543G>A
  hgvsp: ENST00000419585.1:c.3543G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.2042G>A
  hgvsp: ENST00000421731.1:c.2042G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3543G>A
  hgvsp: ENST00000383806.1:c.3543G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1285C>T
  variant of: http://identifiers.org/hgnc/28623
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6025
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2397
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1423
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln1181Gln
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum

3-10130214-A-ATGCTC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130214
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130219
    reference: chr 3
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: ATGCTC
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3556_3560dupCTCTG
  hgvsp: ENSP00000287647.3:p.Ile1188SerfsTer12
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3556_3560dupCTCTG
  hgvsp: ENSP00000373317.1:p.Ile1188SerfsTer12
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1295_117-1291dupGAGCA
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.2055_2059dupCTCTG
  hgvsp: ENSP00000389936.1:p.Ile688SerfsTer12
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3556_3560dupCTCTG
  hgvsp: ENSP00000373318.1:p.Ile1188SerfsTer12
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3556_3560dupCTCTG
  hgvsp: ENSP00000398754.1:p.Ile1188SerfsTer12
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1295_96-1291dupGAGCA
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-7004_*44-7000dupGAGCA
  variant of: http://identifiers.org/hgnc/28623
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13309
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25466
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6002
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33205
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2393
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile1188SerfsTer12
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

3-10130215-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130215
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130215
    reference: chr 3
allele count: 4
allele frequency: 3.29614186594591e-5
allele num: 121354
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3549T>C
  hgvsp: ENST00000383806.1:c.3549T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1291A>G
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.2048T>C
  hgvsp: ENST00000421731.1:c.2048T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3549T>C
  hgvsp: ENST00000287647.3:c.3549T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3549T>C
  hgvsp: ENST00000419585.1:c.3549T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3549T>C
  hgvsp: ENST00000383807.1:c.3549T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1291A>G
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-7000A>G
  variant of: http://identifiers.org/hgnc/28623
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5985
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13304
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11989
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2393
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 7.25e1
  variant carriers: 0
hgvs: p.His1183His
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD

3-10130218-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130218
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130218
    reference: chr 3
allele count: 1
allele frequency: 8.240762105679534e-6
allele num: 121348
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1294A>T
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-7003A>T
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3552T>A
  hgvsp: ENST00000383807.1:c.3552T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3552T>A
  hgvsp: ENST00000287647.3:c.3552T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3552T>A
  hgvsp: ENST00000419585.1:c.3552T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.2051T>A
  hgvsp: ENST00000421731.1:c.2051T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3552T>A
  hgvsp: ENST00000383806.1:c.3552T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1294A>T
  variant of: http://identifiers.org/hgnc/28623
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3309
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5974
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13295
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8118
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2390
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala1184Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

3-10130224-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130224
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130224
    reference: chr 3
allele count: 11
allele frequency: 9.069472156720479e-5
allele num: 121286
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3558C>G
  hgvsp: ENST00000383806.1:c.3558C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-7009G>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3558C>G
  hgvsp: ENST00000383807.1:c.3558C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1300G>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.2057C>G
  hgvsp: ENST00000421731.1:c.2057C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1300G>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3558C>G
  hgvsp: ENST00000419585.1:c.3558C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3558C>G
  hgvsp: ENST00000287647.3:c.3558C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3306
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25365
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5925
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13254
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2000
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: c.3558C>G
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

3-10130237-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130237
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130237
    reference: chr 3
allele count: 11
allele frequency: 9.100686688177381e-5
allele num: 120870
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3560+11T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3560+11T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1313A>G
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1313A>G
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3560+11T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-7022A>G
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3560+11T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.2059+11T>C
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5739
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3256
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24857
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12919
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1953
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

3-10130246-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130246
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130246
    reference: chr 3
allele count: 64
allele frequency: 5.334755934915977e-4
allele num: 119968
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.2059+20C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3560+20C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3560+20C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1322G>A
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3560+20C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-7031G>A
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1322G>A
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3560+20C>T
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2860
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5191
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3052
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 11573
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3664
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22503
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum

3-10130250-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130250
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130250
    reference: chr 3
allele count: 1
allele frequency: 8.345016356232058e-6
allele num: 119832
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.2059+24T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3560+24T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3560+24T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3560+24T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1326A>G
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1326A>G
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-7035A>G
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3560+24T>C
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22040
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4329
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5336
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2882
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10898
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2152
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1029
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11928
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3292
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1740
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum

http://identifiers.org/exac.variant/3-10130255-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130255
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130255
    reference: chr 3
allele count: 1
allele frequency: 8.379279717115517e-6
allele num: 119342
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3560+29C>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3560+29C>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1331G>T
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3560+29C>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-7040G>T
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1331G>T
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.2059+29C>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3560+29C>A
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6055
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9159
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20052
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3925
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5602
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1616
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24344
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum

3-10130261-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130261
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130261
    reference: chr 3
allele count: 1
allele frequency: 8.412551526878102e-6
allele num: 118870
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1337C>G
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.2059+35G>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1337C>G
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-7046C>G
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3560+35G>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3560+35G>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3560+35G>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3560+35G>C
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5493
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7701
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16639
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7744
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3936
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2099
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5623
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

3-10130262-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130262
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130263
    reference: chr 3
allele count: 1
allele frequency: 8.424741781664392e-6
allele num: 118698
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3560+42dupT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-7048dupA
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.2059+42dupT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1339dupA
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3560+42dupT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1339dupA
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3560+42dupT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3560+42dupT
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15938
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7234
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8684
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7463
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4184
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1386
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3608
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5498
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1396
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4634
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

3-10130268-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130268
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130268
    reference: chr 3
allele count: 3
allele frequency: 2.545522426052573e-5
allele num: 117854
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.2059+42T>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3560+42T>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-7053A>T
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1344A>T
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3560+42T>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3560+42T>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1344A>T
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3560+42T>A
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5530
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12665
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7703
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7090
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11916
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2699
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1273
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5071
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2438
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

3-10130462-T-TGTATTCTACTTTGTTAATTAGTGGGTCAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130462
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130491
    reference: chr 3
allele count: 2
allele frequency: 1.647636465490254e-5
allele num: 121386
alternate allele: TGTATTCTACTTTGTTAATTAGTGGGTCAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  variant of: http://identifiers.org/hgnc/28623
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 8121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8759
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6216
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7960
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3398
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4391
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2691
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3287
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: T
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD

3-10130463-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130463
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130463
    reference: chr 3
allele count: 70
allele frequency: 5.766822645488697e-4
allele num: 121384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3561-49G>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3561-49G>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3561-49G>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-7248C>T
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1539C>T
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.2060-49G>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1539C>T
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3561-49G>A
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8753
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6110
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8124
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6219
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2949
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2998
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7963
  bin: 3.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2694
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3871
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3351
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 2
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD

3-10130463-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130463
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130463
    reference: chr 3
allele count: 29
allele frequency: 2.389112238845317e-4
allele num: 121384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3561-49G>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3561-49G>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-7248C>A
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3561-49G>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1539C>A
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.2060-49G>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1539C>A
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3561-49G>T
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7963
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8124
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6219
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8753
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6110
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2998
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2949
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1584
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40116
  bin: 9.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

3-10130466-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130466
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130466
    reference: chr 3
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3561-46T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-7251A>G
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3561-46T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3561-46T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1542A>G
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3561-46T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.2060-46T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1542A>G
  variant of: http://identifiers.org/hgnc/28623
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3415
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7965
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2943
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2713
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1592
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3071
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3879
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

3-10130470-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130470
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130470
    reference: chr 3
allele count: 2
allele frequency: 1.647555028337947e-5
allele num: 121392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.2060-42A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3561-42A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1546T>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3561-42A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3561-42A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3561-42A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-7255T>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1546T>C
  variant of: http://identifiers.org/hgnc/28623
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7964
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6220
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8759
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3429
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2943
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1594
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3448
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

3-10130480-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130480
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130480
    reference: chr 3
allele count: 2
allele frequency: 1.647419317638919e-5
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1556A>G
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3561-32T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.2060-32T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3561-32T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3561-32T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-7265A>G
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3561-32T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1556A>G
  variant of: http://identifiers.org/hgnc/28623
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4388
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2944
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7967
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8765
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3890
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2735
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum

3-10130481-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130481
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130481
    reference: chr 3
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1557A>T
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3561-31T>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.2060-31T>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3561-31T>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-7266A>T
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1557A>T
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3561-31T>A
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3561-31T>A
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7968
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4390
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8764
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2998
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2943
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3451
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3069
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3663
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

3-10130481-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130481
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130481
    reference: chr 3
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3561-31T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1557A>G
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.2060-31T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3561-31T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-7266A>G
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1557A>G
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3561-31T>C
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3561-31T>C
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2998
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7968
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8764
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2943
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4390
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8125
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2739
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1598
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3890
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3663
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP

3-10130487-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130487
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130487
    reference: chr 3
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3561-25G>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-7272C>A
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.2060-25G>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1563C>A
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3561-25G>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1563C>A
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3561-25G>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3561-25G>T
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6172
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7970
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3461
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4389
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2998
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6221
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2944
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40097
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3072
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/3-10130489-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130489
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130490
    reference: chr 3
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-7275dupT
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3561-20dupA
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3561-20dupA
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3561-20dupA
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3561-20dupA
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.2060-20dupA
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1566dupT
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1566dupT
  variant of: http://identifiers.org/hgnc/28623
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6169
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8767
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7974
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2998
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6221
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4389
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3677
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40099
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2129
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

3-10130492-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130492
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130492
    reference: chr 3
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3561-20A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1568T>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1568T>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-7277T>C
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3561-20A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.2060-20A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3561-20A>G
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3561-20A>G
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3460
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2944
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4390
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6221
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7973
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8768
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2998
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6171
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2129
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3893
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3455
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

3-10130494-A-ATTCTAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130494
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130500
    reference: chr 3
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: ATTCTAC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3561-16_3561-15insCTACTT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3561-16_3561-15insCTACTT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3561-16_3561-15insCTACTT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3561-16_3561-15insCTACTT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.2060-16_2060-15insCTACTT
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 7973
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2998
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4390
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6172
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8767
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2944
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6221
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

3-10130498-G-GTTAATT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130498
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130504
    reference: chr 3
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: GTTAATT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3561-14_3561-13insTTAATT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.2060-14_2060-13insTTAATT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3561-14_3561-13insTTAATT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3561-14_3561-13insTTAATT
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3561-14_3561-13insTTAATT
  variant of: http://identifiers.org/hgnc/3585
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6169
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8768
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6221
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2944
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2998
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4390
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7975
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2129
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3455
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3690
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

3-10130509-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 10130509
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 10130509
    reference: chr 3
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000287647
  ensembl transcript: ENST00000287647
  gene symbol: FANCD2
  hgvsc: ENST00000287647.3:c.3561-3C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000398754
  ensembl transcript: ENST00000419585
  gene symbol: FANCD2
  hgvsc: ENST00000419585.1:c.3561-3C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl protein: ENSP00000429663
  ensembl transcript: ENST00000524279
  gene symbol: FANCD2OS
  hgvsc: ENST00000524279.1:c.*44-7294G>A
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373318
  ensembl transcript: ENST00000383807
  gene symbol: FANCD2
  hgvsc: ENST00000383807.1:c.3561-3C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000389936
  ensembl transcript: ENST00000421731
  gene symbol: FANCD2
  hgvsc: ENST00000421731.1:c.2060-3C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000144554
  ensembl protein: ENSP00000373317
  ensembl transcript: ENST00000383806
  gene symbol: FANCD2
  hgvsc: ENST00000383806.1:c.3561-3C>T
  variant of: http://identifiers.org/hgnc/3585
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000436517
  gene symbol: FANCD2OS
  hgvsc: ENST00000436517.1:n.117-1585G>A
  variant of: http://identifiers.org/hgnc/28623
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163705
  ensembl transcript: ENST00000431315
  gene symbol: FANCD2OS
  hgvsc: ENST00000431315.1:n.96-1585G>A
  variant of: http://identifiers.org/hgnc/28623
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2998
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3461
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6174
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4390
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8768
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7974
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6222
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2943
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8128
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3455
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1602
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
hgvs: c.3561-3C>T
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13495
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6158
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3737
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1997
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.36e0

DP
type: SiteQuality
SIO_000300: 3.195471e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.286e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

FS
type: SiteQuality
SIO_000300: 2.6577e1

MQ
type: SiteQuality
SIO_000300: 5.255e1

VQSLOD
type: SiteQuality
SIO_000300: -3.233e0

MQRankSum
type: SiteQuality
SIO_000300: -1.554e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.35e-1

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13495
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1997
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28978
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3521
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.554e0

MQ
type: SiteQuality
SIO_000300: 5.255e1

FS
type: SiteQuality
SIO_000300: 2.6577e1

QD
type: SiteQuality
SIO_000300: 3.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

DP
type: SiteQuality
SIO_000300: 3.195471e6

VQSLOD
type: SiteQuality
SIO_000300: -3.233e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.286e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.26e-1

GenotypeQuality
all individuals: 1056
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3294
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13369
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5531
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 100
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.397506593143131e-4
allele num: 8342
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9920
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65768
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.866021e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e0

VQSLOD
type: SiteQuality
SIO_000300: 6.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

FS
type: SiteQuality
SIO_000300: 6.579e0

MQRankSum
type: SiteQuality
SIO_000300: -6.5e-1

QD
type: SiteQuality
SIO_000300: 1.42e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.5e-1

MQ
type: SiteQuality
SIO_000300: 5.926e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.172e0

GenotypeQuality
all individuals: 378
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4496
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1418
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1935
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14205
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2096
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5571
bin: 9.75e1
variant carriers: 23

GenotypeQuality
all individuals: 4324
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 16
allele frequency: 1.408202781200493e-3
allele num: 11362
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.074806534823732e-4
allele num: 65128
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.314e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-2

MQ
type: SiteQuality
SIO_000300: 5.918e1

DP
type: SiteQuality
SIO_000300: 2.771732e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.509e0

FS
type: SiteQuality
SIO_000300: 2.216e0

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

GenotypeQuality
all individuals: 3004
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2542
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1866
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4071
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5231
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2253
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6174
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7210
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5664
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.000640102416386e-5
allele num: 49992
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8672
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

MQRankSum
type: SiteQuality
SIO_000300: 4.42e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.400298e6

VQSLOD
type: SiteQuality
SIO_000300: -3.27e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.68e-2

QD
type: SiteQuality
SIO_000300: 1.567e1

GenotypeQuality
all individuals: 1346
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9754
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2757
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4128
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4818
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2068
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5197
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5938
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12766
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.163003979927323e-5
allele num: 46232
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5714
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.327e0

QD
type: SiteQuality
SIO_000300: 5.71e0

MQ
type: SiteQuality
SIO_000300: 5.871e1

VQSLOD
type: SiteQuality
SIO_000300: -1.727e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.02e-1

DP
type: SiteQuality
SIO_000300: 2.378262e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.73e-2

GenotypeQuality
all individuals: 4775
bin: 7.5e0
variant carriers: 534

GenotypeQuality
all individuals: 3001
bin: 1.75e1
variant carriers: 440

GenotypeQuality
all individuals: 1051
bin: 6.25e1
variant carriers: 91

GenotypeQuality
all individuals: 3152
bin: 1.25e1
variant carriers: 479

GenotypeQuality
all individuals: 2628
bin: 2.75e1
variant carriers: 350

GenotypeQuality
all individuals: 519
bin: 8.75e1
variant carriers: 35

GenotypeQuality
all individuals: 1279
bin: 5.75e1
variant carriers: 110

GenotypeQuality
all individuals: 2325
bin: 9.75e1
variant carriers: 95

GenotypeQuality
all individuals: 492
bin: 9.25e1
variant carriers: 25

GenotypeQuality
all individuals: 1767
bin: 4.75e1
variant carriers: 148

GenotypeQuality
all individuals: 2552
bin: 3.25e1
variant carriers: 270

GenotypeQuality
all individuals: 838
bin: 7.25e1
variant carriers: 71

South Asian
type: Population
allele count: 623
allele frequency: 8.214662447257384e-2
allele num: 7584
num of homozygotes: 21

Latino
type: Population
allele count: 55
allele frequency: 1.932536893886156e-2
allele num: 2846
num of homozygotes: 4

African
type: Population
allele count: 144
allele frequency: 5.906480721903199e-2
allele num: 2438
num of homozygotes: 16

European (Non-Finnish)
type: Population
allele count: 572
allele frequency: 2.839273304874417e-2
allele num: 20146
num of homozygotes: 13

European (Finnish)
type: Population
allele count: 65
allele frequency: 2.412769116555308e-2
allele num: 2694
num of homozygotes: 1

Other
type: Population
allele count: 11
allele frequency: 3.216374269005848e-2
allele num: 342
num of homozygotes: 0

East Asian
type: Population
allele count: 28
allele frequency: 1.191489361702128e-2
allele num: 2350
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.164e0

MQ
type: SiteQuality
SIO_000300: 5.829e1

QD
type: SiteQuality
SIO_000300: 4.86e0

DP
type: SiteQuality
SIO_000300: 1.335065e6

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.483e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.84e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.35e-1

GenotypeQuality
all individuals: 3152
bin: 1.25e1
variant carriers: 171

GenotypeQuality
all individuals: 1051
bin: 6.25e1
variant carriers: 66

GenotypeQuality
all individuals: 3730
bin: 2.25e1
variant carriers: 159

GenotypeQuality
all individuals: 519
bin: 8.75e1
variant carriers: 31

GenotypeQuality
all individuals: 1476
bin: 5.25e1
variant carriers: 79

GenotypeQuality
all individuals: 551
bin: 8.25e1
variant carriers: 27

GenotypeQuality
all individuals: 3001
bin: 1.75e1
variant carriers: 158

GenotypeQuality
all individuals: 1767
bin: 4.75e1
variant carriers: 100

GenotypeQuality
all individuals: 2328
bin: 3.75e1
variant carriers: 114

GenotypeQuality
all individuals: 2325
bin: 9.75e1
variant carriers: 153

GenotypeQuality
all individuals: 2628
bin: 2.75e1
variant carriers: 143

GenotypeQuality
all individuals: 1279
bin: 5.75e1
variant carriers: 85

East Asian
type: Population
allele count: 5
allele frequency: 2.127659574468085e-3
allele num: 2350
num of homozygotes: 0

African
type: Population
allele count: 176
allele frequency: 7.219031993437244e-2
allele num: 2438
num of homozygotes: 22

Latino
type: Population
allele count: 38
allele frequency: 1.335207308503162e-2
allele num: 2846
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 365
allele frequency: 1.811774049439095e-2
allele num: 20146
num of homozygotes: 13

Other
type: Population
allele count: 10
allele frequency: 2.923976608187134e-2
allele num: 342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 42
allele frequency: 1.55902004454343e-2
allele num: 2694
num of homozygotes: 0

South Asian
type: Population
allele count: 249
allele frequency: 3.283227848101266e-2
allele num: 7584
num of homozygotes: 13

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.483e-1

FS
type: SiteQuality
SIO_000300: 1.164e0

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.84e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.79e-1

MQ
type: SiteQuality
SIO_000300: 5.829e1

QD
type: SiteQuality
SIO_000300: 4.86e0

DP
type: SiteQuality
SIO_000300: 1.335065e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.35e-1

GenotypeQuality
all individuals: 4775
bin: 7.5e0
variant carriers: 17

GenotypeQuality
all individuals: 2328
bin: 3.75e1
variant carriers: 7

GenotypeQuality
all individuals: 1476
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 24056
bin: 2.5e0
variant carriers: 451

GenotypeQuality
all individuals: 1279
bin: 5.75e1
variant carriers: 13

GenotypeQuality
all individuals: 551
bin: 8.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1767
bin: 4.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1024
bin: 6.75e1
variant carriers: 7

GenotypeQuality
all individuals: 492
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1987
bin: 4.25e1
variant carriers: 7

GenotypeQuality
all individuals: 2325
bin: 9.75e1
variant carriers: 34

GenotypeQuality
all individuals: 2628
bin: 2.75e1
variant carriers: 10

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2350
num of homozygotes: 0

African
type: Population
allele count: 15
allele frequency: 6.152584085315833e-3
allele num: 2438
num of homozygotes: 1

South Asian
type: Population
allele count: 47
allele frequency: 6.197257383966245e-3
allele num: 7584
num of homozygotes: 5

European (Non-Finnish)
type: Population
allele count: 38
allele frequency: 1.886230517224263e-3
allele num: 20146
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 342
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 1.40548137737175e-3
allele num: 2846
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 3.711952487008166e-4
allele num: 2694
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

FS
type: SiteQuality
SIO_000300: 1.164e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.84e0

DP
type: SiteQuality
SIO_000300: 1.335065e6

QD
type: SiteQuality
SIO_000300: 4.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.483e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 5.829e1

GenotypeQuality
all individuals: 671
bin: 7.75e1
variant carriers: 309

GenotypeQuality
all individuals: 4775
bin: 7.5e0
variant carriers: 1105

GenotypeQuality
all individuals: 24056
bin: 2.5e0
variant carriers: 928

GenotypeQuality
all individuals: 2628
bin: 2.75e1
variant carriers: 1215

GenotypeQuality
all individuals: 519
bin: 8.75e1
variant carriers: 229

GenotypeQuality
all individuals: 1767
bin: 4.75e1
variant carriers: 1034

GenotypeQuality
all individuals: 2325
bin: 9.75e1
variant carriers: 1075

GenotypeQuality
all individuals: 1279
bin: 5.75e1
variant carriers: 785

GenotypeQuality
all individuals: 492
bin: 9.25e1
variant carriers: 178

GenotypeQuality
all individuals: 1476
bin: 5.25e1
variant carriers: 919

GenotypeQuality
all individuals: 3152
bin: 1.25e1
variant carriers: 1044

GenotypeQuality
all individuals: 2552
bin: 3.25e1
variant carriers: 1075

African
type: Population
allele count: 462
allele frequency: 1.894995898277276e-1
allele num: 2438
num of homozygotes: 1

South Asian
type: Population
allele count: 2027
allele frequency: 2.672732067510549e-1
allele num: 7584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4071
allele frequency: 2.020748535689467e-1
allele num: 20146
num of homozygotes: 0

Latino
type: Population
allele count: 499
allele frequency: 1.753338018271258e-1
allele num: 2846
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 685
allele frequency: 2.542687453600594e-1
allele num: 2694
num of homozygotes: 0

Other
type: Population
allele count: 84
allele frequency: 2.456140350877193e-1
allele num: 342
num of homozygotes: 0

East Asian
type: Population
allele count: 388
allele frequency: 1.651063829787234e-1
allele num: 2350
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.335065e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.84e0

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 4.86e0

FS
type: SiteQuality
SIO_000300: 1.164e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.483e-1

MQ
type: SiteQuality
SIO_000300: 5.829e1

East Asian
type: Population
allele count: 348
allele frequency: 1.480851063829787e-1
allele num: 2350
num of homozygotes: 0

Latino
type: Population
allele count: 475
allele frequency: 1.669009135628953e-1
allele num: 2846
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2436
allele frequency: 1.209173036831133e-1
allele num: 20146
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.829e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 1.164e0

VQSLOD
type: SiteQuality
SIO_000300: 2.84e0

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.483e-1

DP
type: SiteQuality
SIO_000300: 1.335065e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.79e-1

QD
type: SiteQuality
SIO_000300: 4.86e0

GenotypeQuality
all individuals: 24056
bin: 2.5e0
variant carriers: 104

GenotypeQuality
all individuals: 1051
bin: 6.25e1
variant carriers: 34

GenotypeQuality
all individuals: 1279
bin: 5.75e1
variant carriers: 57

GenotypeQuality
all individuals: 1476
bin: 5.25e1
variant carriers: 53

GenotypeQuality
all individuals: 3730
bin: 2.25e1
variant carriers: 83

GenotypeQuality
all individuals: 838
bin: 7.25e1
variant carriers: 38

GenotypeQuality
all individuals: 3001
bin: 1.75e1
variant carriers: 84

GenotypeQuality
all individuals: 2325
bin: 9.75e1
variant carriers: 144

GenotypeQuality
all individuals: 519
bin: 8.75e1
variant carriers: 27

GenotypeQuality
all individuals: 2628
bin: 2.75e1
variant carriers: 70

GenotypeQuality
all individuals: 551
bin: 8.25e1
variant carriers: 22

GenotypeQuality
all individuals: 671
bin: 7.75e1
variant carriers: 26

East Asian
type: Population
allele count: 4
allele frequency: 1.702127659574468e-3
allele num: 2350
num of homozygotes: 0

South Asian
type: Population
allele count: 229
allele frequency: 3.019514767932489e-2
allele num: 7584
num of homozygotes: 20

Other
type: Population
allele count: 3
allele frequency: 8.771929824561403e-3
allele num: 342
num of homozygotes: 0

African
type: Population
allele count: 108
allele frequency: 4.429860541427399e-2
allele num: 2438
num of homozygotes: 9

European (Finnish)
type: Population
allele count: 25
allele frequency: 9.279881217520415e-3
allele num: 2694
num of homozygotes: 0

Latino
type: Population
allele count: 22
allele frequency: 7.730147575544624e-3
allele num: 2846
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 240
allele frequency: 1.191303484562692e-2
allele num: 20146
num of homozygotes: 9

ClippingRankSum
type: SiteQuality
SIO_000300: -7.79e-1

MQ
type: SiteQuality
SIO_000300: 5.829e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 1.164e0

QD
type: SiteQuality
SIO_000300: 4.86e0

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.84e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.35e-1

DP
type: SiteQuality
SIO_000300: 1.335065e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.483e-1

GenotypeQuality
all individuals: 1957
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 841
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1703
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 934
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2089
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3723
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2910
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4238
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3909
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1616
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7648
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43910
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10718
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8008
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4526
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.95e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.95e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.473e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.02e-1

DP
type: SiteQuality
SIO_000300: 1.864669e6

MQ
type: SiteQuality
SIO_000300: 3.669e1

FS
type: SiteQuality
SIO_000300: 3.5466e1

MQRankSum
type: SiteQuality
SIO_000300: -8.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.575e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.61e0

GenotypeQuality
all individuals: 608
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1640
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1945
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4545
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1101
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1666
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.098659635245001e-4
allele num: 9102
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11108
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e0

DP
type: SiteQuality
SIO_000300: 1.87719e6

QD
type: SiteQuality
SIO_000300: 1.434e1

MQRankSum
type: SiteQuality
SIO_000300: 2.18e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.95e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.045e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.96e0

MQ
type: SiteQuality
SIO_000300: 5.589e1

GenotypeQuality
all individuals: 1666
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3958
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15321
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4045
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1632
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6691
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1097
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4485
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60794
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.105460977227504e-4
allele num: 9046
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11026
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16154
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6462
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.032e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.738e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.819681e6

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

GenotypeQuality
all individuals: 1536
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6451
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 8331
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10541
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2887
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1544
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3064
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4546
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 799
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.965099827071215e-5
allele num: 50888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7962
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14984
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.074575542660649e-4
allele num: 9306
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.03e-2

QD
type: SiteQuality
SIO_000300: 5.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

MQ
type: SiteQuality
SIO_000300: 5.777e1

DP
type: SiteQuality
SIO_000300: 1.732113e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

MQRankSum
type: SiteQuality
SIO_000300: -2.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-1

GenotypeQuality
all individuals: 548
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1544
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4546
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6451
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3064
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10541
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4122
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2900
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1337
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 799
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1121
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6262
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7962
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.895299481213646e-5
allele num: 50888
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14984
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5616
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.03e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

MQ
type: SiteQuality
SIO_000300: 5.777e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.32e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-1

DP
type: SiteQuality
SIO_000300: 1.732113e6

QD
type: SiteQuality
SIO_000300: 5.19e0

GenotypeQuality
all individuals: 579
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2482
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3126
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10820
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1165
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 992
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5091
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 448
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8562
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1388
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.198681613973212e-5
allele num: 47634
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 704
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8940
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5810
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5516
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.30033581544751e-5
allele num: 13698
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.93e0

VQSLOD
type: SiteQuality
SIO_000300: -3.783e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.34e-1

QD
type: SiteQuality
SIO_000300: 1.569e1

MQ
type: SiteQuality
SIO_000300: 5.545e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.07e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.75e-1

DP
type: SiteQuality
SIO_000300: 1.586945e6

GenotypeQuality
all individuals: 1562
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3316
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2116
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 847
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 983
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2287
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4744
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5093
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9972
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6166
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.283367556468173e-4
allele num: 7792
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.91e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.74e-1

QD
type: SiteQuality
SIO_000300: 2.881e1

MQ
type: SiteQuality
SIO_000300: 5.312e1

VQSLOD
type: SiteQuality
SIO_000300: 7.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.6e-3

DP
type: SiteQuality
SIO_000300: 1.400447e6

GenotypeQuality
all individuals: 6288
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2070
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2291
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 984
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1536
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 855
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 531
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5769
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1179
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3824
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3737
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9956
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7788
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6154
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52248
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15180
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.273e0

MQ
type: SiteQuality
SIO_000300: 4.174e1

QD
type: SiteQuality
SIO_000300: 9.0e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.481e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.204e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

DP
type: SiteQuality
SIO_000300: 1.399885e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.317e0

GenotypeQuality
all individuals: 22
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32242
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1486
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12056
bin: 9.75e1
variant carriers: 19

GenotypeQuality
all individuals: 160
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.593360995850622e-4
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 2.398153421865164e-4
allele num: 66718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.359953e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.79e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

QD
type: SiteQuality
SIO_000300: 1.409e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.74e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.292e0

GenotypeQuality
all individuals: 575
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12022
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 49
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8152
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 862
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32755
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.643e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

DP
type: SiteQuality
SIO_000300: 2.360233e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.21e0

VQSLOD
type: SiteQuality
SIO_000300: 1.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.331e0

QD
type: SiteQuality
SIO_000300: 1.723e1

GenotypeQuality
all individuals: 572
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2421
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1451
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12022
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 8158
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 862
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.232e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.02e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.227e0

DP
type: SiteQuality
SIO_000300: 2.360441e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.937e-1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2408
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2034
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12016
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1438
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.2e0

MQ
type: SiteQuality
SIO_000300: 5.7e1

VQSLOD
type: SiteQuality
SIO_000300: -1.397e0

FS
type: SiteQuality
SIO_000300: 3.046e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.809e0

QD
type: SiteQuality
SIO_000300: 1.642e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.63e-1

DP
type: SiteQuality
SIO_000300: 2.361197e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-1

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8160
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2404
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 855
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2031
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.493555542233679e-5
allele num: 66724
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.75e0

DP
type: SiteQuality
SIO_000300: 2.361339e6

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.02e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

QD
type: SiteQuality
SIO_000300: 1.327e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.04e-1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12011
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8162
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1432
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2405
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2031
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 853
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.257e1

DP
type: SiteQuality
SIO_000300: 2.361164e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.808e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.51e0

VQSLOD
type: SiteQuality
SIO_000300: 1.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2028
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33192
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2403
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8158
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12011
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 567
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.36162e6

VQSLOD
type: SiteQuality
SIO_000300: 8.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.25e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.75e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.85e-1

QD
type: SiteQuality
SIO_000300: 1.203e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.946e0

FS
type: SiteQuality
SIO_000300: 1.742e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.94e-1

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2030
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8160
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1428
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33200
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.36162e6

MQ
type: SiteQuality
SIO_000300: 5.956e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.119e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.66e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

FS
type: SiteQuality
SIO_000300: 3.188e0

QD
type: SiteQuality
SIO_000300: 7.47e0

VQSLOD
type: SiteQuality
SIO_000300: -6.664e-1

GenotypeQuality
all individuals: 567
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33234
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 853
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8160
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12008
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2028
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

MQ
type: SiteQuality
SIO_000300: 5.073e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.009e0

DP
type: SiteQuality
SIO_000300: 2.361923e6

MQRankSum
type: SiteQuality
SIO_000300: -7.495e0

QD
type: SiteQuality
SIO_000300: 9.59e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.48e-1

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33239
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2401
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8159
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2028
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1428
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.7e-1

MQ
type: SiteQuality
SIO_000300: 5.984e1

FS
type: SiteQuality
SIO_000300: 2.7202e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.7e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.566e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.818e1

DP
type: SiteQuality
SIO_000300: 2.361858e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.53e0

GenotypeQuality
all individuals: 33255
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2027
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1429
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 853
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2402
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.18e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.361978e6

QD
type: SiteQuality
SIO_000300: 9.220000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -8.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.99e0

FS
type: SiteQuality
SIO_000300: 3.923e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.291e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.66e-1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1428
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8157
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12005
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2026
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.66e-1

DP
type: SiteQuality
SIO_000300: 2.362001e6

QD
type: SiteQuality
SIO_000300: 1.103e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.55e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.19e0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2402
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1428
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2026
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12005
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.362001e6

MQ
type: SiteQuality
SIO_000300: 5.94e1

VQSLOD
type: SiteQuality
SIO_000300: 2.55e0

QD
type: SiteQuality
SIO_000300: 1.103e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.19e0

MQRankSum
type: SiteQuality
SIO_000300: 2.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2403
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1427
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8157
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33265
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12005
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2026
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.633720930232558e-4
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.137e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.156e0

DP
type: SiteQuality
SIO_000300: 2.362339e6

MQ
type: SiteQuality
SIO_000300: 5.984e1

VQSLOD
type: SiteQuality
SIO_000300: 1.98e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.211e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQRankSum
type: SiteQuality
SIO_000300: 5.84e-1

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33265
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1427
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12005
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2403
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.98e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.137e0

DP
type: SiteQuality
SIO_000300: 2.362339e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.45e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

QD
type: SiteQuality
SIO_000300: 1.211e1

MQRankSum
type: SiteQuality
SIO_000300: 5.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.156e0

MQ
type: SiteQuality
SIO_000300: 5.984e1

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33269
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2402
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12000
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1427
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.437e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.809e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.811e0

QD
type: SiteQuality
SIO_000300: 9.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.6e0

MQRankSum
type: SiteQuality
SIO_000300: -1.02e0

DP
type: SiteQuality
SIO_000300: 2.361849e6

GenotypeQuality
all individuals: 8158
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33268
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1427
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2402
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.361845e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.478e0

MQRankSum
type: SiteQuality
SIO_000300: 1.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.342e1

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

FS
type: SiteQuality
SIO_000300: 2.862e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.63e0

GenotypeQuality
all individuals: 33270
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8157
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2402
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 849
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1427
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2023
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.495190146543199e-5
allele num: 66738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

DP
type: SiteQuality
SIO_000300: 2.361885e6

FS
type: SiteQuality
SIO_000300: 1.809e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

QD
type: SiteQuality
SIO_000300: 1.088e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-2

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33270
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1425
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 18
allele frequency: 1.090116279069767e-3
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.969e1

FS
type: SiteQuality
SIO_000300: 1.103e0

DP
type: SiteQuality
SIO_000300: 2.362785e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.81e-1

QD
type: SiteQuality
SIO_000300: 1.191e1

VQSLOD
type: SiteQuality
SIO_000300: 2.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.3e0

MQRankSum
type: SiteQuality
SIO_000300: 3.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.79e-1

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2021
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8157
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2402
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1426
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.51e-1

DP
type: SiteQuality
SIO_000300: 2.361767e6

MQ
type: SiteQuality
SIO_000300: 5.91e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.186e0

QD
type: SiteQuality
SIO_000300: 1.302e1

VQSLOD
type: SiteQuality
SIO_000300: -2.478e-1

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11997
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2401
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33282
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1426
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2020
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.375e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e0

FS
type: SiteQuality
SIO_000300: 7.746e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.6e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.38e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.431e0

QD
type: SiteQuality
SIO_000300: 1.529e1

DP
type: SiteQuality
SIO_000300: 2.361764e6

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2401
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1425
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2020
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11995
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.97e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.59e-1

DP
type: SiteQuality
SIO_000300: 2.361626e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.52e1

MQ
type: SiteQuality
SIO_000300: 5.928e1

FS
type: SiteQuality
SIO_000300: 1.839e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.13e0

GenotypeQuality
all individuals: 848
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11994
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8151
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2021
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.991e0

VQSLOD
type: SiteQuality
SIO_000300: 8.100000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.499e0

FS
type: SiteQuality
SIO_000300: 3.11e0

QD
type: SiteQuality
SIO_000300: 1.37e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.361604e6

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8148
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1426
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2021
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11994
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.537e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.87e0

VQSLOD
type: SiteQuality
SIO_000300: 6.919999999999999e-1

FS
type: SiteQuality
SIO_000300: 1.659e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

DP
type: SiteQuality
SIO_000300: 2.361306e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2400
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33266
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.633720930232558e-4
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.361447e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.26e-1

FS
type: SiteQuality
SIO_000300: 1.165e0

QD
type: SiteQuality
SIO_000300: 1.221e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.22e0

MQRankSum
type: SiteQuality
SIO_000300: 1.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.015e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.81e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

GenotypeQuality
all individuals: 2018
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33245
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11989
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8143
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 849
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.921968095329617e-4
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.65e0

QD
type: SiteQuality
SIO_000300: 1.313e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

DP
type: SiteQuality
SIO_000300: 2.360939e6

MQRankSum
type: SiteQuality
SIO_000300: -5.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.906e0

FS
type: SiteQuality
SIO_000300: 9.07e-1

MQ
type: SiteQuality
SIO_000300: 5.982e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.54e-1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1423
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2017
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11989
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 562
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8138
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.271e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.81e-1

DP
type: SiteQuality
SIO_000300: 2.360277e6

FS
type: SiteQuality
SIO_000300: 3.678e0

MQ
type: SiteQuality
SIO_000300: 5.137e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

QD
type: SiteQuality
SIO_000300: 1.025e1

MQRankSum
type: SiteQuality
SIO_000300: -5.544e0

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e0

GenotypeQuality
all individuals: 76
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1422
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33149
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8130
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.995203836930456e-5
allele num: 66720
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.413e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.537e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.38e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
type: SiteQuality
SIO_000300: 7.7e-1

DP
type: SiteQuality
SIO_000300: 2.359923e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

FS
type: SiteQuality
SIO_000300: 3.029e0

QD
type: SiteQuality
SIO_000300: 1.107e1

GenotypeQuality
all individuals: 2012
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1418
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11988
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 33133
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

FS
type: SiteQuality
SIO_000300: 7.474e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.11e-1

QD
type: SiteQuality
SIO_000300: 1.398e1

DP
type: SiteQuality
SIO_000300: 2.359244e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.74e0

MQRankSum
type: SiteQuality
SIO_000300: -5.649999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 846
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11987
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 2381
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8083
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33009
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.649719547676895e-4
allele num: 66678
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.356954e6

VQSLOD
type: SiteQuality
SIO_000300: 4.33e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.157e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.1e-1

QD
type: SiteQuality
SIO_000300: 1.553e1

MQ
type: SiteQuality
SIO_000300: 5.961e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeQuality
all individuals: 7920
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32093
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11967
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 2303
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1375
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.072382803011902e-4
allele num: 16468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.097e0

DP
type: SiteQuality
SIO_000300: 2.338712e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.693e0

QD
type: SiteQuality
SIO_000300: 1.199e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.45e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 826
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28130
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2176
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1783
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11975
bin: 9.75e1
variant carriers: 64

GenotypeQuality
all individuals: 7007
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2905
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1312
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.637130801687763e-4
allele num: 11376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

African
type: Population
allele count: 60
allele frequency: 5.789270551910459e-3
allele num: 10364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8450
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.11358574610245e-3
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.269885e6

VQSLOD
type: SiteQuality
SIO_000300: 4.4e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.543e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.14e-1

FS
type: SiteQuality
SIO_000300: 8.48e-1

QD
type: SiteQuality
SIO_000300: 1.424e1

MQRankSum
type: SiteQuality
SIO_000300: 1.38e-1

GenotypeQuality
all individuals: 932
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27721
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1531
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 822
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6713
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1306
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65796
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.185395922238028e-4
allele num: 8436
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.185e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.445e1

MQRankSum
type: SiteQuality
SIO_000300: 6.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

DP
type: SiteQuality
SIO_000300: 2.245317e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

GenotypeQuality
all individuals: 1537
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4161
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2022
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2595
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1275
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11918
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5998
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1758
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.68429207824908e-5
allele num: 10326
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.69e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.627e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

DP
type: SiteQuality
SIO_000300: 2.183163e6

QD
type: SiteQuality
SIO_000300: 1.212e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.58e-1

GenotypeQuality
all individuals: 4622
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1163
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1532
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11916
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19565
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1966
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1252
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3232
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65208
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8286
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16358
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.873114463176575e-5
allele num: 11270
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 3.222e0

VQSLOD
type: SiteQuality
SIO_000300: -3.024e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.64e0

DP
type: SiteQuality
SIO_000300: 2.116397e6

QD
type: SiteQuality
SIO_000300: 1.412e1

MQRankSum
type: SiteQuality
SIO_000300: -1.303e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.782e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.01e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

GenotypeQuality
all individuals: 267
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11914
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 92
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18536
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1906
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1504
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 813
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1238
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2200
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65116
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.723842862699339e-5
allele num: 10284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11230
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8268
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.1e-1

FS
type: SiteQuality
SIO_000300: 2.126e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.97e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-2

DP
type: SiteQuality
SIO_000300: 2.103237e6

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

QD
type: SiteQuality
SIO_000300: 1.086e1

GenotypeQuality
all individuals: 1759
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3825
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1215
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5496
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12694
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1402
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4410
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3553
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.643387815750371e-5
allele num: 64608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8082
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11160
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.973e0

FS
type: SiteQuality
SIO_000300: 4.332e0

VQSLOD
type: SiteQuality
SIO_000300: 1.77e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.41e-1

DP
type: SiteQuality
SIO_000300: 2.033012e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-2

QD
type: SiteQuality
SIO_000300: 1.446e1

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1588
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3063
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3447
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2132
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40111
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3873
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997242536866083e-5
allele num: 66728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.191e1

DP
type: SiteQuality
SIO_000300: 3.09783e6

QD
type: SiteQuality
SIO_000300: 2.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 8.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.94e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.958e0

VQSLOD
type: SiteQuality
SIO_000300: -5.131e-1

GenotypeQuality
all individuals: 16
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3056
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3432
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1584
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40116
bin: 9.75e1
variant carriers: 68

GenotypeQuality
all individuals: 131
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 48
allele frequency: 2.90732889158086e-3
allele num: 16510
num of homozygotes: 2

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 21
allele frequency: 3.147198992896322e-4
allele num: 66726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.981e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.78e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.518e0

DP
type: SiteQuality
SIO_000300: 3.098246e6

MQRankSum
type: SiteQuality
SIO_000300: 2.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.28e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.67e-1

QD
type: SiteQuality
SIO_000300: 1.369e1

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3351
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2694
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3871
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3432
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3056
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 2.397865899349579e-4
allele num: 66726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 7
allele frequency: 1.058681185722928e-3
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.634161114476075e-4
allele num: 16510
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

MQRankSum
type: SiteQuality
SIO_000300: 2.21e-1

QD
type: SiteQuality
SIO_000300: 1.369e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.78e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.28e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.518e0

DP
type: SiteQuality
SIO_000300: 3.098246e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.03e-1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3447
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2130
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3432
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40088
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 3.098157e6

MQ
type: SiteQuality
SIO_000300: 5.978e1

VQSLOD
type: SiteQuality
SIO_000300: -2.749e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.68e0

QD
type: SiteQuality
SIO_000300: 1.594e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.323e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.77e-1

GenotypeQuality
all individuals: 49
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40092
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3551
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3067
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2128
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3881
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2714
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.743e1

MQRankSum
type: SiteQuality
SIO_000300: -1.209e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.66e-1

FS
type: SiteQuality
SIO_000300: 7.32e0

MQ
type: SiteQuality
SIO_000300: 5.984e1

VQSLOD
type: SiteQuality
SIO_000300: -1.072e0

DP
type: SiteQuality
SIO_000300: 3.098898e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.53e-1

GenotypeQuality
all individuals: 1598
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40096
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3664
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3449
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3070
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2130
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.996973057212216e-5
allele num: 66734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.44e-1

QD
type: SiteQuality
SIO_000300: 1.321e1

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.21e-2

MQ
type: SiteQuality
SIO_000300: 5.962e1

FS
type: SiteQuality
SIO_000300: 1.849e0

DP
type: SiteQuality
SIO_000300: 3.100217e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.02e0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40096
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2739
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2131
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1598
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3890
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.423e1

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

DP
type: SiteQuality
SIO_000300: 3.10026e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.12e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.88e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.91e0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2131
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40096
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3451
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3069
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.88e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.12e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.91e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.423e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

DP
type: SiteQuality
SIO_000300: 3.10026e6

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2743
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3453
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3669
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1602
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2129
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3893
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

VQSLOD
type: SiteQuality
SIO_000300: 6.17e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.870000000000001e-1

FS
type: SiteQuality
SIO_000300: 2.913e0

QD
type: SiteQuality
SIO_000300: 9.94e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.900000000000001e-3

MQ
type: SiteQuality
SIO_000300: 5.972e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.034e0

DP
type: SiteQuality
SIO_000300: 3.10083e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.233e0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3076
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3453
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3892
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1601
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2747
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.09e-1

FS
type: SiteQuality
SIO_000300: 4.445e0

QD
type: SiteQuality
SIO_000300: 1.209e1

MQRankSum
type: SiteQuality
SIO_000300: 1.44e-1

DP
type: SiteQuality
SIO_000300: 3.100907e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.17e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.3e-2

MQ
type: SiteQuality
SIO_000300: 5.998e1

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

GenotypeQuality
all individuals: 2745
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1603
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3075
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3686
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40097
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.842e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.703e0

DP
type: SiteQuality
SIO_000300: 3.100978e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -5.044e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e0

MQ
type: SiteQuality
SIO_000300: 5.868e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.22e-1

QD
type: SiteQuality
SIO_000300: 3.5e-1

GenotypeQuality
all individuals: 1603
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3455
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40099
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3688
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3076
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2129
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3892
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2747
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.867e1

VQSLOD
type: SiteQuality
SIO_000300: -2.114e0

FS
type: SiteQuality
SIO_000300: 2.207e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.365e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.424e0

QD
type: SiteQuality
SIO_000300: 1.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.487e0

DP
type: SiteQuality
SIO_000300: 3.101025e6

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40097
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1602
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2746
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3077
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3892
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.101082e6

VQSLOD
type: SiteQuality
SIO_000300: -2.717e0

FS
type: SiteQuality
SIO_000300: 2.2e0

MQRankSum
type: SiteQuality
SIO_000300: -2.843e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.871e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.622e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.256e0

QD
type: SiteQuality
SIO_000300: 1.7e-1