1-21945531-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21945531
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21945531
    reference: chr 1
allele count: 1
allele frequency: 1.775442085079185e-5
allele num: 56324
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.146C>T
  hgvsp: ENSP00000363893.2:p.Pro49Leu
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.53C>T
  hgvsp: ENSP00000363897.4:p.Pro18Leu
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.146C>T
  hgvsp: ENSP00000470945.1:p.Pro49Leu
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.713C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.53C>T
  hgvsp: ENSP00000363895.2:p.Pro18Leu
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.53C>T
  hgvsp: ENSP00000392717.1:p.Pro18Leu
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.245C>T
  hgvsp: ENSP00000352739.4:p.Pro82Leu
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.53C>T
  hgvsp: ENSP00000441661.1:p.Pro18Leu
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.53C>T
  hgvsp: ENSP00000315420.7:p.Pro18Leu
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.53C>T
  hgvsp: ENSP00000431364.1:p.Pro18Leu
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.53C>T
  hgvsp: ENSP00000434033.1:p.Pro18Leu
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.245C>T
  hgvsp: ENSP00000290101.4:p.Pro82Leu
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27962
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3617
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6298
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro82Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

1-21945544-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21945544
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21945544
    reference: chr 1
allele count: 5
allele frequency: 8.681459874292461e-5
allele num: 57594
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.133C>T
  hgvsp: ENSP00000470945.1:p.Arg45Cys
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.40C>T
  hgvsp: ENSP00000363895.2:p.Arg14Cys
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.40C>T
  hgvsp: ENSP00000431364.1:p.Arg14Cys
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.40C>T
  hgvsp: ENSP00000315420.7:p.Arg14Cys
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.40C>T
  hgvsp: ENSP00000363897.4:p.Arg14Cys
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.40C>T
  hgvsp: ENSP00000441661.1:p.Arg14Cys
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.40C>T
  hgvsp: ENSP00000392717.1:p.Arg14Cys
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.40C>T
  hgvsp: ENSP00000434033.1:p.Arg14Cys
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.133C>T
  hgvsp: ENSP00000363893.2:p.Arg45Cys
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.232C>T
  hgvsp: ENSP00000352739.4:p.Arg78Cys
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.700C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.232C>T
  hgvsp: ENSP00000290101.4:p.Arg78Cys
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7044
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4040
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12494
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27447
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg78Cys
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

1-21945548-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21945548
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21945548
    reference: chr 1
allele count: 3
allele frequency: 5.227391531625719e-5
allele num: 57390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.129A>G
  hgvsp: ENST00000374761.2:c.129A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.228A>G
  hgvsp: ENST00000359708.4:c.228A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.36A>G
  hgvsp: ENST00000374763.2:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.696A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.36A>G
  hgvsp: ENST00000374765.4:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.36A>G
  hgvsp: ENST00000471600.2:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.129A>G
  hgvsp: ENST00000599760.1:c.129A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.36A>G
  hgvsp: ENST00000542643.2:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.228A>G
  hgvsp: ENST00000290101.4:c.228A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.36A>G
  hgvsp: ENST00000447293.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.36A>G
  hgvsp: ENST00000495204.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.36A>G
  hgvsp: ENST00000317967.7:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3687
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11717
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4223
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27447
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7666
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu76Glu
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

1-21945550-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21945550
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21945550
    reference: chr 1
allele count: 2
allele frequency: 3.513333099111127e-5
allele num: 56926
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.34G>A
  hgvsp: ENSP00000363895.2:p.Glu12Lys
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.127G>A
  hgvsp: ENSP00000363893.2:p.Glu43Lys
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.34G>A
  hgvsp: ENSP00000441661.1:p.Glu12Lys
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.34G>A
  hgvsp: ENSP00000392717.1:p.Glu12Lys
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.226G>A
  hgvsp: ENSP00000352739.4:p.Glu76Lys
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.694G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.226G>A
  hgvsp: ENSP00000290101.4:p.Glu76Lys
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.34G>A
  hgvsp: ENSP00000431364.1:p.Glu12Lys
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.34G>A
  hgvsp: ENSP00000434033.1:p.Glu12Lys
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.34G>A
  hgvsp: ENSP00000315420.7:p.Glu12Lys
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.127G>A
  hgvsp: ENSP00000470945.1:p.Glu43Lys
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.34G>A
  hgvsp: ENSP00000363897.4:p.Glu12Lys
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4381
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8092
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11032
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27381
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu76Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

1-21945556-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21945556
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21945556
    reference: chr 1
allele count: 3
allele frequency: 5.335420075407271e-5
allele num: 56228
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.121A>G
  hgvsp: ENSP00000470945.1:p.Met41Val
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.28A>G
  hgvsp: ENSP00000441661.1:p.Met10Val
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.220A>G
  hgvsp: ENSP00000352739.4:p.Met74Val
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.28A>G
  hgvsp: ENSP00000363895.2:p.Met10Val
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.220A>G
  hgvsp: ENSP00000290101.4:p.Met74Val
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.28A>G
  hgvsp: ENSP00000434033.1:p.Met10Val
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.28A>G
  hgvsp: ENSP00000315420.7:p.Met10Val
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.28A>G
  hgvsp: ENSP00000431364.1:p.Met10Val
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.121A>G
  hgvsp: ENSP00000363893.2:p.Met41Val
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.688A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.28A>G
  hgvsp: ENSP00000363897.4:p.Met10Val
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.28A>G
  hgvsp: ENSP00000392717.1:p.Met10Val
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9450
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4924
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9208
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27278
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met74Val
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

1-21945574-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21945574
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21945574
    reference: chr 1
allele count: 1
allele frequency: 1.869228756215186e-5
allele num: 53498
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.19-9C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.211-9C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.19-9C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.679-9C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.19-9C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.112-9C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.19-9C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.19-9C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.19-9C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.19-9C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.211-9C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.112-9C>T
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3172
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12310
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7486
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5482
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25877
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

1-21945578-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21945578
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21945578
    reference: chr 1
allele count: 4
allele frequency: 7.594456047085628e-5
allele num: 52670
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.19-13C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.112-13C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.19-13C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.211-13C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.19-13C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.679-13C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.19-13C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.19-13C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.112-13C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.211-13C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.19-13C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.19-13C>A
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25316
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12788
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3061
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8381
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4656
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ

http://identifiers.org/exac.variant/1-21945583-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21945583
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21945582
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 51244
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.211-19delG
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.19-19delG
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.112-19delG
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.679-19delG
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.19-19delG
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.19-19delG
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.19-19delG
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.112-19delG
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.19-19delG
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.19-19delG
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.19-19delG
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.211-19delG
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 24506
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9754
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
reference allele: AC
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

1-21945585-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21945585
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21945585
    reference: chr 1
allele count: 2
allele frequency: 3.96290718871364e-5
allele num: 50468
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.19-20A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.211-20A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.19-20A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.112-20A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.112-20A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.19-20A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.19-20A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.679-20A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.19-20A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.19-20A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.19-20A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.211-20A>G
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3370
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24059
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10579
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

1-21945587-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21945587
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21945587
    reference: chr 1
allele count: 25
allele frequency: 4.996402590135103e-4
allele num: 50036
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.19-22A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.112-22A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.19-22A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.19-22A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.19-22A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.112-22A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.19-22A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.19-22A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.211-22A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.679-22A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.211-22A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.19-22A>G
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11056
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23794
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13074
  bin: 1.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

1-21945590-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21945590
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21945590
    reference: chr 1
allele count: 2
allele frequency: 4.14181577203446e-5
allele num: 48288
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.19-25G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.211-25G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.112-25G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.19-25G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.19-25G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.19-25G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.19-25G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.19-25G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.679-25G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.19-25G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.211-25G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.112-25G>A
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12325
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12805
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD

1-21945593-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21945593
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21945593
    reference: chr 1
allele count: 1
allele frequency: 2.243259006684912e-5
allele num: 44578
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.19-28G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.19-28G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.211-28G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.211-28G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.679-28G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.19-28G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.112-28G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.19-28G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.19-28G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.19-28G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.19-28G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.112-28G>A
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14348
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11916
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22334
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/1-21945602-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21945602
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21945602
    reference: chr 1
allele count: 4
allele frequency: 1.00999899000101e-4
allele num: 39604
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.19-37G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.679-37G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.19-37G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.19-37G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.211-37G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.19-37G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.112-37G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.211-37G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.19-37G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.19-37G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.112-37G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.19-37G>T
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9683
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16266
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22836
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum

1-21945606-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21945606
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21945606
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 35172
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.19-41G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.19-41G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.19-41G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.112-41G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.19-41G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.19-41G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.211-41G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.19-41G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.19-41G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.679-41G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.112-41G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.211-41G>A
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 7770
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16721
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP

1-21945607-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21945607
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21945607
    reference: chr 1
allele count: 4
allele frequency: 1.132182281347297e-4
allele num: 35330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.19-42G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.211-42G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.19-42G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.679-42G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.112-42G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.19-42G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.211-42G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.112-42G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.19-42G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.19-42G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.19-42G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.19-42G>A
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7743
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24139
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16799
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

1-21945608-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21945608
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21945608
    reference: chr 1
allele count: 1
allele frequency: 3.14901121047991e-5
allele num: 31756
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.19-43C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.19-43C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.679-43C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.211-43C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.112-43C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.19-43C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.19-43C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.19-43C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.19-43C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.211-43C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.112-43C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.19-43C>T
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16918
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25066
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6581
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

1-21945608-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21945608
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21945608
    reference: chr 1
allele count: 3
allele frequency: 9.447033631439728e-5
allele num: 31756
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.19-43C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.19-43C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.19-43C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.679-43C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.19-43C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.19-43C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.112-43C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.211-43C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.211-43C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.112-43C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.19-43C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.19-43C>G
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16918
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25066
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6581
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

1-21945608-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21945608
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21945608
    reference: chr 1
allele count: 1
allele frequency: 3.14901121047991e-5
allele num: 31756
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.112-43C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.19-43C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.211-43C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.19-43C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.211-43C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.19-43C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.19-43C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.19-43C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.112-43C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.679-43C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.19-43C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.19-43C>A
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16918
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6581
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25066
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

1-21945610-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21945610
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21945610
    reference: chr 1
allele count: 1
allele frequency: 3.085277057879798e-5
allele num: 32412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.112-45G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.19-45G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.19-45G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.112-45G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.19-45G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.211-45G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.19-45G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.19-45G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.679-45G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.211-45G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.19-45G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.19-45G>A
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17053
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6495
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

1-21945614-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21945614
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21945614
    reference: chr 1
allele count: 3
allele frequency: 9.63020030816641e-5
allele num: 31152
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.19-49G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.19-49G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.19-49G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.211-49G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.19-49G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.112-49G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.19-49G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.112-49G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.679-49G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.19-49G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.211-49G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.19-49G>C
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6064
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16808
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25478
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

1-21945614-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21945614
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21945614
    reference: chr 1
allele count: 1051
allele frequency: 3.373780174627632e-2
allele num: 31152
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.19-49G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.19-49G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.679-49G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.19-49G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.19-49G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.112-49G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.112-49G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.19-49G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.19-49G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.19-49G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.211-49G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.211-49G>A
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25478
  bin: 7.5e0
  variant carriers: 1148
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 3.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 16808
  bin: 2.5e0
  variant carriers: 169
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 2.25e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 1.75e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 2.75e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 6.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 6064
  bin: 1.25e1
  variant carriers: 439
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 3.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
num of homozygotes: 26
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

1-21945615-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21945615
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21945615
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 31040
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.19-50C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.679-50C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.211-50C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.19-50C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.19-50C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.112-50C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.19-50C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.112-50C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.19-50C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.211-50C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.19-50C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.19-50C>T
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 25452
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17277
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5976
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

1-21946463-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21946463
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21946463
    reference: chr 1
allele count: 2
allele frequency: 1.657495193263939e-5
allele num: 120664
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.210+45C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.18+45C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.111+45C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.111+45C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.18+45C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.18+45C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.18+45C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.210+45C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.18+45C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.678+45C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.18+45C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.18+45C>T
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22478
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15988
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

1-21946473-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21946473
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21946473
    reference: chr 1
allele count: 1
allele frequency: 8.286789200656313e-6
allele num: 120674
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.18+35A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.18+35A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.18+35A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.111+35A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.210+35A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.210+35A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.18+35A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.18+35A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.18+35A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.678+35A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.18+35A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.111+35A>G
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11082
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

1-21946474-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21946474
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21946474
    reference: chr 1
allele count: 1
allele frequency: 8.285827919925758e-6
allele num: 120688
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.111+34C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.18+34C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.210+34C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.18+34C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.18+34C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.210+34C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.18+34C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.18+34C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.18+34C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.678+34C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.18+34C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.111+34C>G
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3575
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3319
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22529
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16217
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

1-21946478-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21946478
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21946478
    reference: chr 1
allele count: 1
allele frequency: 8.284317786430287e-6
allele num: 120710
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.678+30G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.18+30G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.18+30G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.18+30G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.210+30G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.18+30G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.18+30G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.210+30G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.18+30G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.111+30G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.18+30G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.111+30G>A
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3619
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11077
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16335
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3319
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

1-21946485-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21946485
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21946485
    reference: chr 1
allele count: 2
allele frequency: 1.656150113446283e-5
allele num: 120762
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.18+23T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.18+23T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.18+23T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.18+23T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.18+23T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.18+23T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.210+23T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.111+23T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.18+23T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.111+23T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.678+23T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.210+23T>C
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3785
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11071
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16423
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

1-21946492-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21946492
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21946492
    reference: chr 1
allele count: 7
allele frequency: 5.793838666423877e-5
allele num: 120818
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.18+16T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.678+16T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.210+16T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.111+16T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.18+16T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.18+16T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.18+16T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.111+16T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.210+16T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.18+16T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.18+16T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.18+16T>C
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3862
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16557
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22616
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3316
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11072
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

1-21946501-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21946501
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21946501
    reference: chr 1
allele count: 1
allele frequency: 8.272256506129742e-6
allele num: 120886
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.18+7A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.18+7A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.18+7A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.18+7A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.18+7A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.678+7A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.210+7A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.210+7A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.18+7A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.111+7A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.111+7A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.18+7A>G
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22635
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3988
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11081
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.210+7A>G
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/1-21946502-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21946502
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21946502
    reference: chr 1
allele count: 1
allele frequency: 8.271845945141119e-6
allele num: 120892
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.678+6G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.111+6G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.210+6G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.18+6G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.111+6G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.18+6G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.18+6G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.18+6G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.210+6G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.18+6G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.18+6G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.18+6G>T
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3986
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22633
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16613
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11084
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.210+6G>T
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

1-21946517-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21946517
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21946517
    reference: chr 1
allele count: 16
allele frequency: 1.323582939015916e-4
allele num: 120884
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.102G>A
  hgvsp: ENST00000374761.2:c.102G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.9G>A
  hgvsp: ENST00000317967.7:c.9G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.9G>A
  hgvsp: ENST00000471600.2:c.9G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.669G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.201G>A
  hgvsp: ENST00000359708.4:c.201G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.9G>A
  hgvsp: ENST00000495204.1:c.9G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.9G>A
  hgvsp: ENST00000374765.4:c.9G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.9G>A
  hgvsp: ENST00000374763.2:c.9G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.9G>A
  hgvsp: ENST00000542643.2:c.9G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.102G>A
  hgvsp: ENST00000599760.1:c.102G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.9G>A
  hgvsp: ENST00000447293.1:c.9G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.201G>A
  hgvsp: ENST00000290101.4:c.201G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3985
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3316
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11076
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu67Glu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD

1-21946525-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21946525
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21946525
    reference: chr 1
allele count: 1
allele frequency: 8.273899157717065e-6
allele num: 120862
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363895
  ensembl transcript: ENST00000374763
  gene symbol: RAP1GAP
  hgvsc: ENST00000374763.2:c.1A>G
  hgvsp: ENSP00000363895.2:p.Met1?
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.94A>G
  hgvsp: ENSP00000363893.2:p.Met32Val
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.1A>G
  hgvsp: ENSP00000315420.7:p.Met1?
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.1A>G
  hgvsp: ENSP00000392717.1:p.Met1?
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.1A>G
  hgvsp: ENSP00000431364.1:p.Met1?
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.94A>G
  hgvsp: ENSP00000470945.1:p.Met32Val
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.193A>G
  hgvsp: ENSP00000352739.4:p.Met65Val
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.193A>G
  hgvsp: ENSP00000290101.4:p.Met65Val
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.1A>G
  hgvsp: ENSP00000434033.1:p.Met1?
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.1A>G
  hgvsp: ENSP00000363897.4:p.Met1?
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.1A>G
  hgvsp: ENSP00000441661.1:p.Met1?
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.661A>G
  variant of: http://identifiers.org/hgnc/9858
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22636
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Met1?
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD

1-21946546-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21946546
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21946546
    reference: chr 1
allele count: 2
allele frequency: 1.657742486282181e-5
allele num: 120646
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.-18-3C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.76-3C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.-18-3C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.643-3C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.-18-3C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.-18-3C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.76-3C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.-18-3C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.175-3C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000482984
  gene symbol: RAP1GAP
  hgvsc: ENST00000482984.1:n.322-3C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.-18-3C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.175-3C>T
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11072
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22557
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3623
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16438
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.175-3C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

1-21946550-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21946550
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21946550
    reference: chr 1
allele count: 2
allele frequency: 1.659227795384028e-5
allele num: 120538
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.175-7G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.-18-7G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.76-7G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.-18-7G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.643-7G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000482984
  gene symbol: RAP1GAP
  hgvsc: ENST00000482984.1:n.322-7G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.-18-7G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.-18-7G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.175-7G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.-18-7G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.76-7G>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.-18-7G>C
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22420
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16236
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11049
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3303
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3486
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.175-7G>C
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP

1-21946550-CAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21946550
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21946548
    reference: chr 1
allele count: 2
allele frequency: 1.659227795384028e-5
allele num: 120538
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.-18-9_-18-8delCT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.-18-9_-18-8delCT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.-18-9_-18-8delCT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.643-9_643-8delCT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.-18-9_-18-8delCT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.-18-9_-18-8delCT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.-18-9_-18-8delCT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.175-9_175-8delCT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.175-9_175-8delCT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.76-9_76-8delCT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.76-9_76-8delCT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000482984
  gene symbol: RAP1GAP
  hgvsc: ENST00000482984.1:n.322-9_322-8delCT
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22420
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11049
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3303
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16236
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3486
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.175-9_175-8delCT
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: CAG
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

1-21946553-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21946553
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21946553
    reference: chr 1
allele count: 1
allele frequency: 8.309650828472188e-6
allele num: 120342
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.-18-10T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.-18-10T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.76-10T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.76-10T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.-18-10T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.175-10T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.-18-10T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000482984
  gene symbol: RAP1GAP
  hgvsc: ENST00000482984.1:n.322-10T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.-18-10T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.-18-10T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.175-10T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.643-10T>C
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3297
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15635
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21824
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

1-21946554-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21946554
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21946555
    reference: chr 1
allele count: 2
allele frequency: 1.66198540776812e-5
allele num: 120338
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.76-12dupT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.-18-12dupT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.175-12dupT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000482984
  gene symbol: RAP1GAP
  hgvsc: ENST00000482984.1:n.322-12dupT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.175-12dupT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.-18-12dupT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.643-12dupT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.-18-12dupT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.-18-12dupT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.-18-12dupT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.76-12dupT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.-18-12dupT
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10786
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15638
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

1-21946558-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21946558
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21946558
    reference: chr 1
allele count: 4
allele frequency: 3.329892444474044e-5
allele num: 120124
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.175-15C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.175-15C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000482984
  gene symbol: RAP1GAP
  hgvsc: ENST00000482984.1:n.322-15C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.76-15C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.76-15C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.-18-15C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.-18-15C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.-18-15C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.-18-15C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.-18-15C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.643-15C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.-18-15C>T
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20876
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15053
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10329
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3182
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS

1-21946567-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21946567
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21946567
    reference: chr 1
allele count: 2
allele frequency: 1.68625533278249e-5
allele num: 118606
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.-18-24C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.-18-24C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.175-24C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.-18-24C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000482984
  gene symbol: RAP1GAP
  hgvsc: ENST00000482984.1:n.322-24C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.76-24C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.643-24C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.76-24C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.-18-24C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.175-24C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.-18-24C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.-18-24C>T
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5950
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7054
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11290
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13657
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

1-21946576-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21946576
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21946576
    reference: chr 1
allele count: 1
allele frequency: 9.058791557206268e-6
allele num: 110390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.-18-33A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000482984
  gene symbol: RAP1GAP
  hgvsc: ENST00000482984.1:n.322-33A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.-18-33A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.76-33A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.76-33A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.643-33A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.175-33A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.-18-33A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.175-33A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.-18-33A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.-18-33A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.-18-33A>G
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8446
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15636
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13185
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6021
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9172
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: T
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

1-21946579-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21946579
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21946579
    reference: chr 1
allele count: 25
allele frequency: 2.504658665117118e-4
allele num: 99814
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000482984
  gene symbol: RAP1GAP
  hgvsc: ENST00000482984.1:n.322-36A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.-18-36A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.175-36A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.-18-36A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.-18-36A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.-18-36A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.-18-36A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.643-36A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.-18-36A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.76-36A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.76-36A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.175-36A>G
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 9430
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15562
  bin: 1.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8904
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13525
  bin: 2.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum

1-21946582-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21946582
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21946582
    reference: chr 1
allele count: 2
allele frequency: 1.715324710967786e-5
allele num: 116596
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.-18-39G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.76-39G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.-18-39G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.-18-39G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.-18-39G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.76-39G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.643-39G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000482984
  gene symbol: RAP1GAP
  hgvsc: ENST00000482984.1:n.322-39G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.-18-39G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.175-39G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.175-39G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.-18-39G>A
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7483
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9399
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3367
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12620
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13765
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9107
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

1-21946583-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21946583
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21946583
    reference: chr 1
allele count: 2
allele frequency: 1.729266099467386e-5
allele num: 115656
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.175-40C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.76-40C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.-18-40C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.-18-40C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000482984
  gene symbol: RAP1GAP
  hgvsc: ENST00000482984.1:n.322-40C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.-18-40C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.-18-40C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.-18-40C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.-18-40C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.76-40C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.175-40C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.643-40C>T
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9557
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3304
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12394
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7495
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14175
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8832
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

1-21946592-C-CAGAGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21946592
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21946597
    reference: chr 1
allele count: 1
allele frequency: 8.497187430960352e-6
allele num: 117686
alternate allele: CAGAGG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.-18-54_-18-50dupCCTCT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.-18-54_-18-50dupCCTCT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.76-54_76-50dupCCTCT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.643-54_643-50dupCCTCT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000482984
  gene symbol: RAP1GAP
  hgvsc: ENST00000482984.1:n.322-54_322-50dupCCTCT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.-18-54_-18-50dupCCTCT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.-18-54_-18-50dupCCTCT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.-18-54_-18-50dupCCTCT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.-18-54_-18-50dupCCTCT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.175-54_175-50dupCCTCT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.76-54_76-50dupCCTCT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.175-54_175-50dupCCTCT
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3340
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8709
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6392
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8824
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12442
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

1-21948831-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21948831
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21948831
    reference: chr 1
allele count: 1
allele frequency: 9.090909090909091e-4
allele num: 1100
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.175-2288G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.-18-2288G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.-18-2288G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.175-2288G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.75+1G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.643-2288G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.-18-2288G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.-18-2288G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.-18-2288G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.-18-2288G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000482984
  gene symbol: RAP1GAP
  hgvsc: ENST00000482984.1:n.322-2288G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.75+1G>A
  variant of: http://identifiers.org/hgnc/9858
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3616
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.75+1G>A
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/1-21948844-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21948844
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21948844
    reference: chr 1
allele count: 2
allele frequency: 2.923976608187134e-3
allele num: 684
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.-18-2301G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.63G>T
  hgvsp: ENST00000599760.1:c.63G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.643-2301G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.-18-2301G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.-18-2301G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.-18-2301G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363893
  ensembl transcript: ENST00000374761
  gene symbol: RAP1GAP
  hgvsc: ENST00000374761.2:c.63G>T
  hgvsp: ENST00000374761.2:c.63G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.-18-2301G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.175-2301G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.-18-2301G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.175-2301G>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000482984
  gene symbol: RAP1GAP
  hgvsc: ENST00000482984.1:n.322-2301G>T
  variant of: http://identifiers.org/hgnc/9858
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3500
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly21Gly
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD

1-21948936-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21948936
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21948936
    reference: chr 1
allele count: 0
allele frequency: NaN
allele num: 0
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.-18-2393C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000482984
  gene symbol: RAP1GAP
  hgvsc: ENST00000482984.1:n.322-2393C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.175-2393C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.175-2393C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.643-2393C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.-18-2393C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.-18-2393C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.-18-2393C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.-18-2393C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000470945
  ensembl transcript: ENST00000599760
  gene symbol: RAP1GAP
  hgvsc: ENST00000599760.1:c.-30C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.-18-2393C>G
  variant of: http://identifiers.org/hgnc/9858
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum

1-21952747-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21952747
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21952747
    reference: chr 1
allele count: 1
allele frequency: 8.379139294811638e-6
allele num: 119344
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.174+50G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.-19+50G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.-19+50G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.-19+50G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.-19+50G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.642+50G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.174+50G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.-19+50G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000464457
  gene symbol: RAP1GAP
  hgvsc: ENST00000464457.1:n.350+50G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000482984
  gene symbol: RAP1GAP
  hgvsc: ENST00000482984.1:n.321+50G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.-19+50G>A
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6967
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12815
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9770
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11256
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4305
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4708
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3543
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD

1-21952748-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21952748
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21952748
    reference: chr 1
allele count: 10
allele frequency: 8.368761088608442e-5
allele num: 119492
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.642+49C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.174+49C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.-19+49C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.-19+49C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000464457
  gene symbol: RAP1GAP
  hgvsc: ENST00000464457.1:n.350+49C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.-19+49C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000482984
  gene symbol: RAP1GAP
  hgvsc: ENST00000482984.1:n.321+49C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.-19+49C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.-19+49C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.-19+49C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.174+49C>T
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9780
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4349
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6952
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2911
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12845
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4713
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3783
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS

1-21952749-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21952749
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21952749
    reference: chr 1
allele count: 1
allele frequency: 8.366240546148183e-6
allele num: 119528
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.-19+48C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000482984
  gene symbol: RAP1GAP
  hgvsc: ENST00000482984.1:n.321+48C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.-19+48C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.-19+48C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.642+48C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.-19+48C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.-19+48C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.-19+48C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000464457
  gene symbol: RAP1GAP
  hgvsc: ENST00000464457.1:n.350+48C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.174+48C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.174+48C>G
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4712
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9787
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2910
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6942
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

1-21952751-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21952751
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21952751
    reference: chr 1
allele count: 1
allele frequency: 8.365820603342981e-6
allele num: 119534
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.-19+46C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000482984
  gene symbol: RAP1GAP
  hgvsc: ENST00000482984.1:n.321+46C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.642+46C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.174+46C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000464457
  gene symbol: RAP1GAP
  hgvsc: ENST00000464457.1:n.350+46C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.-19+46C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.-19+46C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.-19+46C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.-19+46C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.-19+46C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.174+46C>G
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2911
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11367
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6940
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4712
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9796
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4514
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff

1-21952759-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21952759
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21952759
    reference: chr 1
allele count: 1
allele frequency: 8.359246999030327e-6
allele num: 119628
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.-19+38C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000464457
  gene symbol: RAP1GAP
  hgvsc: ENST00000464457.1:n.350+38C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.-19+38C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.174+38C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.-19+38C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.-19+38C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000482984
  gene symbol: RAP1GAP
  hgvsc: ENST00000482984.1:n.321+38C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.174+38C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.-19+38C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.642+38C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.-19+38C>T
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4712
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6955
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9810
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2912
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11655
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3788
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

1-21952766-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21952766
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21952765
    reference: chr 1
allele count: 1
allele frequency: 8.355754608198667e-6
allele num: 119678
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.174+30delC
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000482984
  gene symbol: RAP1GAP
  hgvsc: ENST00000482984.1:n.321+30delC
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.-19+30delC
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.-19+30delC
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.-19+30delC
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.-19+30delC
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.-19+30delC
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.174+30delC
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000464457
  gene symbol: RAP1GAP
  hgvsc: ENST00000464457.1:n.350+30delC
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.-19+30delC
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.642+30delC
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13171
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4806
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4715
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2912
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6955
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9826
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3824
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: AG
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

1-21952772-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21952772
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21952772
    reference: chr 1
allele count: 3
allele frequency: 2.506056302731601e-5
allele num: 119710
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.174+25G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.-19+25G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000464457
  gene symbol: RAP1GAP
  hgvsc: ENST00000464457.1:n.350+25G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.-19+25G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.642+25G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000482984
  gene symbol: RAP1GAP
  hgvsc: ENST00000482984.1:n.321+25G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.-19+25G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.-19+25G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.-19+25G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.174+25G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.-19+25G>A
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2912
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4714
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11984
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6969
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4894
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9844
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS

1-21952773-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21952773
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21952773
    reference: chr 1
allele count: 3
allele frequency: 2.505930702662969e-5
allele num: 119716
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.174+24C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.-19+24C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000482984
  gene symbol: RAP1GAP
  hgvsc: ENST00000482984.1:n.321+24C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.-19+24C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.642+24C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.-19+24C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.174+24C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.-19+24C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.-19+24C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.-19+24C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000464457
  gene symbol: RAP1GAP
  hgvsc: ENST00000464457.1:n.350+24C>T
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6970
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11989
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9846
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4925
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

1-21952779-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21952779
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21952779
    reference: chr 1
allele count: 184
allele frequency: 1.536739773163847e-3
allele num: 119734
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.-19+18T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.174+18T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.-19+18T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.-19+18T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.-19+18T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.642+18T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.174+18T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000482984
  gene symbol: RAP1GAP
  hgvsc: ENST00000482984.1:n.321+18T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.-19+18T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.-19+18T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000464457
  gene symbol: RAP1GAP
  hgvsc: ENST00000464457.1:n.350+18T>C
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 13219
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 6959
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 4699
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 6.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9844
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 12072
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2918
  bin: 5.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 4927
  bin: 2.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 3834
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 3
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

1-21952788-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21952788
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21952788
    reference: chr 1
allele count: 26
allele frequency: 2.170464980382336e-4
allele num: 119790
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000464457
  gene symbol: RAP1GAP
  hgvsc: ENST00000464457.1:n.350+9C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.174+9C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.-19+9C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000482984
  gene symbol: RAP1GAP
  hgvsc: ENST00000482984.1:n.321+9C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.174+9C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.642+9C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.-19+9C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.-19+9C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.-19+9C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.-19+9C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.-19+9C>T
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6952
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4709
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9849
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13230
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12136
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4938
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3833
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP

1-21952791-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21952791
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21952791
    reference: chr 1
allele count: 1
allele frequency: 8.346548702111677e-6
allele num: 119810
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.-19+6T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.-19+6T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000482984
  gene symbol: RAP1GAP
  hgvsc: ENST00000482984.1:n.321+6T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.-19+6T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000464457
  gene symbol: RAP1GAP
  hgvsc: ENST00000464457.1:n.350+6T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.-19+6T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.174+6T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.174+6T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.-19+6T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.-19+6T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.642+6T>C
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9853
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4955
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4704
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6952
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13236
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.174+6T>C
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum

1-21952794-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21952794
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21952795
    reference: chr 1
allele count: 1
allele frequency: 8.3462700519138e-6
allele num: 119814
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.-19+2dupT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.174+2dupT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000464457
  gene symbol: RAP1GAP
  hgvsc: ENST00000464457.1:n.350+2dupT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.-19+2dupT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.-19+2dupT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.642+2dupT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.-19+2dupT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.-19+2dupT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000482984
  gene symbol: RAP1GAP
  hgvsc: ENST00000482984.1:n.321+2dupT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.-19+2dupT
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.174+2dupT
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4951
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13235
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12162
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9852
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6954
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.174+2dupT
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

1-21952802-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21952802
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21952802
    reference: chr 1
allele count: 61
allele frequency: 5.090799839764989e-4
allele num: 119824
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.169C>A
  hgvsp: ENSP00000352739.4:p.Pro57Thr
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000482984
  gene symbol: RAP1GAP
  hgvsc: ENST00000482984.1:n.316C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.-24C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.-24C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.169C>A
  hgvsp: ENSP00000290101.4:p.Pro57Thr
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000464457
  gene symbol: RAP1GAP
  hgvsc: ENST00000464457.1:n.345C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.-24C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.637C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.-24C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.-24C>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.-24C>A
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13230
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4712
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 6948
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12155
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 9847
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4974
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 6.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
hgvs: p.Pro57Thr
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP

1-21952803-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21952803
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21952803
    reference: chr 1
allele count: 5
allele frequency: 4.173065366895907e-5
allele num: 119816
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000482984
  gene symbol: RAP1GAP
  hgvsc: ENST00000482984.1:n.315C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.-25C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.-25C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.-25C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.636C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.-25C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.168C>T
  hgvsp: ENST00000290101.4:c.168C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.168C>T
  hgvsp: ENST00000359708.4:c.168C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.-25C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000464457
  gene symbol: RAP1GAP
  hgvsc: ENST00000464457.1:n.344C>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.-25C>T
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9861
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6958
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4959
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2912
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13242
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4710
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Tyr56Tyr
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

1-21952808-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21952808
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21952808
    reference: chr 1
allele count: 1
allele frequency: 8.345712807330875e-6
allele num: 119822
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.-30C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.163C>G
  hgvsp: ENSP00000290101.4:p.Leu55Val
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.-30C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.163C>G
  hgvsp: ENSP00000352739.4:p.Leu55Val
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.-30C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.-30C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000464457
  gene symbol: RAP1GAP
  hgvsc: ENST00000464457.1:n.339C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000482984
  gene symbol: RAP1GAP
  hgvsc: ENST00000482984.1:n.310C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.-30C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.631C>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.-30C>G
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6958
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2912
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13248
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4707
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu55Val
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

1-21952809-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21952809
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21952809
    reference: chr 1
allele count: 1
allele frequency: 8.34640937468701e-6
allele num: 119812
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.-31A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.-31A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.162A>G
  hgvsp: ENST00000290101.4:c.162A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.-31A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000464457
  gene symbol: RAP1GAP
  hgvsc: ENST00000464457.1:n.338A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.-31A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000482984
  gene symbol: RAP1GAP
  hgvsc: ENST00000482984.1:n.309A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.162A>G
  hgvsp: ENST00000359708.4:c.162A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.-31A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.-31A>G
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.630A>G
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4707
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4963
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13245
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6960
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2912
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9859
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser54Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

1-21952812-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21952812
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21952812
    reference: chr 1
allele count: 3
allele frequency: 2.504131817498873e-5
allele num: 119802
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.-34T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.-34T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.-34T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.-34T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.627T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.159T>C
  hgvsp: ENST00000359708.4:c.159T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.-34T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.159T>C
  hgvsp: ENST00000290101.4:c.159T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000482984
  gene symbol: RAP1GAP
  hgvsc: ENST00000482984.1:n.306T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000464457
  gene symbol: RAP1GAP
  hgvsc: ENST00000464457.1:n.335T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.-34T>C
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9860
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2911
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13244
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12177
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6959
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4707
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro53Pro
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

1-21952815-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21952815
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21952815
    reference: chr 1
allele count: 1
allele frequency: 8.3462700519138e-6
allele num: 119814
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.-37T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.624T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.-37T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.156T>C
  hgvsp: ENST00000359708.4:c.156T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000464457
  gene symbol: RAP1GAP
  hgvsc: ENST00000464457.1:n.332T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000482984
  gene symbol: RAP1GAP
  hgvsc: ENST00000482984.1:n.303T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.-37T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.156T>C
  hgvsp: ENST00000290101.4:c.156T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.-37T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.-37T>C
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.-37T>C
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6959
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13242
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12177
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9860
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4707
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4973
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2911
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr52Thr
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

1-21952839-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21952839
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21952839
    reference: chr 1
allele count: 1
allele frequency: 8.348081610845828e-6
allele num: 119788
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.-61A>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.132A>T
  hgvsp: ENST00000359708.4:c.132A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.-61A>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.-61A>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000464457
  gene symbol: RAP1GAP
  hgvsc: ENST00000464457.1:n.308A>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000482984
  gene symbol: RAP1GAP
  hgvsc: ENST00000482984.1:n.279A>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.-61A>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.-61A>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.132A>T
  hgvsp: ENST00000290101.4:c.132A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.600A>T
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.-61A>T
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9860
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2911
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6959
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13246
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4995
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12160
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4707
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg44Arg
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS

1-21952840-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 21952840
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 21952840
    reference: chr 1
allele count: 13
allele frequency: 1.0852687292338e-4
allele num: 119786
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000434033
  ensembl transcript: ENST00000495204
  gene symbol: RAP1GAP
  hgvsc: ENST00000495204.1:c.-62G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000290101
  ensembl transcript: ENST00000290101
  gene symbol: RAP1GAP
  hgvsc: ENST00000290101.4:c.131G>A
  hgvsp: ENSP00000290101.4:p.Arg44Gln
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000352739
  ensembl transcript: ENST00000359708
  gene symbol: RAP1GAP
  hgvsc: ENST00000359708.4:c.131G>A
  hgvsp: ENSP00000352739.4:p.Arg44Gln
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000482984
  gene symbol: RAP1GAP
  hgvsc: ENST00000482984.1:n.278G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000441661
  ensembl transcript: ENST00000542643
  gene symbol: RAP1GAP
  hgvsc: ENST00000542643.2:c.-62G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000374757
  gene symbol: RAP1GAP
  hgvsc: ENST00000374757.3:n.599G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000431364
  ensembl transcript: ENST00000471600
  gene symbol: RAP1GAP
  hgvsc: ENST00000471600.2:c.-62G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000315420
  ensembl transcript: ENST00000317967
  gene symbol: RAP1GAP
  hgvsc: ENST00000317967.7:c.-62G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000392717
  ensembl transcript: ENST00000447293
  gene symbol: RAP1GAP
  hgvsc: ENST00000447293.1:c.-62G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000076864
  ensembl transcript: ENST00000464457
  gene symbol: RAP1GAP
  hgvsc: ENST00000464457.1:n.307G>A
  variant of: http://identifiers.org/hgnc/9858
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000076864
  ensembl protein: ENSP00000363897
  ensembl transcript: ENST00000374765
  gene symbol: RAP1GAP
  hgvsc: ENST00000374765.4:c.-62G>A
  variant of: http://identifiers.org/hgnc/9858
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9857
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12163
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2912
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4705
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13243
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4998
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6958
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Arg44Gln
num of homozygotes: 1
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

GenotypeDepth
all individuals: 296
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 124
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 717
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 67
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 934
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14497
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1464
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1535
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2568
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4009
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29887
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1175
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1372
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.881422924901186e-5
allele num: 10120
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5160
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.03e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.29951e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.7e-3

QD
type: SiteQuality
SIO_000300: 8.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

GenotypeDepth
all individuals: 533
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 329
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 99
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 67
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1461
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14666
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4021
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1026
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30701
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1477
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2569
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 230
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.023122570083896e-4
allele num: 29322
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.863585538576221e-4
allele num: 5366
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.69664065151001e-4
allele num: 5894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10228
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4998
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1406
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-2

DP
type: SiteQuality
SIO_000300: 9.32152e5

MQRankSum
type: SiteQuality
SIO_000300: -3.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.2e0

FS
type: SiteQuality
SIO_000300: 3.514e0

QD
type: SiteQuality
SIO_000300: 1.082e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 289
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 435
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 714
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 125
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1511
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14042
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 855
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4178
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31235
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1056
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1454
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2568
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 181
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5362
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10220
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.714089818306479e-4
allele num: 5834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4954
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.84134911404529e-5
allele num: 29234
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 9.032e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.7e-3

QD
type: SiteQuality
SIO_000300: 1.244e1

DP
type: SiteQuality
SIO_000300: 9.22453e5

GenotypeDepth
all individuals: 67
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 296
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 535
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 99
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1551
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1439
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31371
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2563
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4382
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 231
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 930
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1120
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13236
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28952
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10188
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 3.779289493575208e-4
allele num: 5292
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5814
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4920
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.03e-2

DP
type: SiteQuality
SIO_000300: 9.15851e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.398e0

MQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.05e-1

QD
type: SiteQuality
SIO_000300: 4.32e0

VQSLOD
type: SiteQuality
SIO_000300: -2.461e0

GenotypeDepth
all individuals: 67
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 115
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3635
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 67
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variant carriers: 0

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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Finnish)
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East Asian
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African
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Other
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European (Non-Finnish)
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ClippingRankSum
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QD
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DP
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MQRankSum
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MQ
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FS
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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African
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Latino
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East Asian
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Other
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European (Finnish)
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QD
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ClippingRankSum
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DP
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MQRankSum
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MQ
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FS
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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African
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European (Finnish)
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South Asian
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Latino
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European (Non-Finnish)
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VQSLOD
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DP
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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QD
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BaseQRankSum
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

South Asian
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European (Non-Finnish)
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Latino
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Other
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East Asian
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African
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VQSLOD
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QD
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BaseQRankSum
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DP
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FS
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MQ
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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European (Non-Finnish)
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African
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South Asian
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Latino
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Other
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ReadPosRankSum
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DP
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MQ
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VQSLOD
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FS
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MQRankSum
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QD
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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South Asian
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African
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East Asian
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European (Finnish)
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Other
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QD
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ClippingRankSum
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BaseQRankSum
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DP
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MQ
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MQRankSum
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InbreedingCoeff
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FS
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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Other
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European (Finnish)
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European (Non-Finnish)
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East Asian
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South Asian
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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MQ
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DP
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BaseQRankSum
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 5.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21946
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3592
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.09819555182543e-4
allele num: 4766
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.27338e5

MQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.6e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.99e-2

QD
type: SiteQuality
SIO_000300: 1.426e1

GenotypeDepth
all individuals: 1805
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3012
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3058
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19244
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 9.233610341643582e-4
allele num: 4332
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9034
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ClippingRankSum
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SIO_000300: -7.51e-1

BaseQRankSum
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SIO_000300: -3.61e-1

QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.34e-2

DP
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SIO_000300: 6.86209e5

FS
type: SiteQuality
SIO_000300: 1.0951e1

VQSLOD
type: SiteQuality
SIO_000300: -1.566e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.13e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8696
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4056
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16746
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 262
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.72e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.113e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.65e-2

DP
type: SiteQuality
SIO_000300: 6.60642e5

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1954
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1705
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 7.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 2.375014843842774e-4
allele num: 16842
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 266
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4070
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8698
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.81e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.718e-1

FS
type: SiteQuality
SIO_000300: 7.045e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.65e-2

QD
type: SiteQuality
SIO_000300: 1.063e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

DP
type: SiteQuality
SIO_000300: 6.59546e5

GenotypeDepth
all individuals: 650
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1502
bin: 2.75e1
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GenotypeQuality
all individuals: 2560
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.769564040075819e-5
allele num: 14772
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2080
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1968
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3790
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.189e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.9e-2

MQRankSum
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QD
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MQ
type: SiteQuality
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DP
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SIO_000300: 6.50637e5

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.69e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14772
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.536901674133459e-4
allele num: 8482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1968
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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InbreedingCoeff
type: SiteQuality
SIO_000300: 8.9e-2

QD
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DP
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FS
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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SIO_000300: -1.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1968
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2080
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 1.178967224711153e-4
allele num: 8482
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.69e-1

MQRankSum
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ClippingRankSum
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VQSLOD
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MQ
type: SiteQuality
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QD
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FS
type: SiteQuality
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InbreedingCoeff
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DP
type: SiteQuality
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 450
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variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2122
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 258
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2046
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.172332942555686e-4
allele num: 8530
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.77e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.151e0

QD
type: SiteQuality
SIO_000300: 9.199999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.537e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.77e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.683e-1

DP
type: SiteQuality
SIO_000300: 6.4912e5

GenotypeDepth
all individuals: 118
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16576
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3998
bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 748
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variant carriers: 0

GenotypeQuality
all individuals: 3437
bin: 9.75e1
variant carriers: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1950
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.579098067287044e-4
allele num: 8382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1874
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.08e-2

FS
type: SiteQuality
SIO_000300: 2.707e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.26e0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

QD
type: SiteQuality
SIO_000300: 1.409e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.85e-1

DP
type: SiteQuality
SIO_000300: 6.48264e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

GenotypeDepth
all individuals: 292
bin: 5.75e1
variant carriers: 26

GenotypeQuality
all individuals: 3437
bin: 9.75e1
variant carriers: 1028

GenotypeQuality
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variant carriers: 110

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 5.25e1
variant carriers: 100

GenotypeQuality
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variant carriers: 31

GenotypeQuality
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variant carriers: 80

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 116

GenotypeQuality
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variant carriers: 107

GenotypeQuality
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variant carriers: 16

GenotypeQuality
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variant carriers: 28

GenotypeQuality
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variant carriers: 37

GenotypeQuality
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variant carriers: 101

GenotypeQuality
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variant carriers: 158

GenotypeQuality
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variant carriers: 52

GenotypeQuality
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variant carriers: 39

GenotypeQuality
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variant carriers: 57

GenotypeQuality
all individuals: 457
bin: 7.75e1
variant carriers: 93

GenotypeQuality
all individuals: 262
bin: 5.75e1
variant carriers: 91

European (Non-Finnish)
type: Population
allele count: 860
allele frequency: 5.913091309130913e-2
allele num: 14544
num of homozygotes: 23

Other
type: Population
allele count: 13
allele frequency: 5.158730158730158e-2
allele num: 252
num of homozygotes: 0

African
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allele count: 36
allele frequency: 9.66183574879227e-3
allele num: 3726
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1950
num of homozygotes: 0

Latino
type: Population
allele count: 61
allele frequency: 3.255069370330843e-2
allele num: 1874
num of homozygotes: 1

South Asian
type: Population
allele count: 52
allele frequency: 6.203769983297542e-3
allele num: 8382
num of homozygotes: 0

European (Finnish)
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allele count: 29
allele frequency: 6.839622641509434e-2
allele num: 424
num of homozygotes: 1

FS
type: SiteQuality
SIO_000300: 2.707e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

QD
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SIO_000300: 1.409e1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.26e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.08e-2

DP
type: SiteQuality
SIO_000300: 6.48264e5

GenotypeDepth
all individuals: 67
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variant carriers: 0

GenotypeQuality
all individuals: 17426
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1012
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GenotypeQuality
all individuals: 2601
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GenotypeQuality
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GenotypeQuality
all individuals: 734
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variant carriers: 0

GenotypeQuality
all individuals: 148
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3722
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1848
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1950
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 400
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.394e0

QD
type: SiteQuality
SIO_000300: 1.246e1

MQ
type: SiteQuality
SIO_000300: 5.945e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.86e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.881e0

MQRankSum
type: SiteQuality
SIO_000300: -9.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.182e-1

DP
type: SiteQuality
SIO_000300: 6.46652e5

GenotypeDepth
all individuals: 52
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variant carriers: 0

GenotypeQuality
all individuals: 35738
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variant carriers: 0

GenotypeQuality
all individuals: 78
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GenotypeQuality
all individuals: 423
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variant carriers: 0

GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 351
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variant carriers: 0

GenotypeQuality
all individuals: 64
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variant carriers: 0

GenotypeQuality
all individuals: 451
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GenotypeQuality
all individuals: 1923
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variant carriers: 2

GenotypeQuality
all individuals: 87
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GenotypeQuality
all individuals: 388
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variant carriers: 0

GenotypeQuality
all individuals: 327
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GenotypeQuality
all individuals: 227
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GenotypeQuality
all individuals: 46
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GenotypeQuality
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GenotypeQuality
all individuals: 2720
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 12692
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variant carriers: 0

GenotypeQuality
all individuals: 1166
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variant carriers: 0

GenotypeQuality
all individuals: 3043
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.935733643050716e-4
allele num: 10332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.299e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 1.95569e6

FS
type: SiteQuality
SIO_000300: 1.507e0

QD
type: SiteQuality
SIO_000300: 1.401e1

MQRankSum
type: SiteQuality
SIO_000300: -3.66e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.91e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.95e-1

GenotypeDepth
all individuals: 130
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variant carriers: 0

GenotypeQuality
all individuals: 426
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1919
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variant carriers: 1

GenotypeQuality
all individuals: 447
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variant carriers: 0

GenotypeQuality
all individuals: 2688
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66130
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156871818602499e-4
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.96e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

VQSLOD
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DP
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ReadPosRankSum
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FS
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MQRankSum
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QD
type: SiteQuality
SIO_000300: 8.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e0

BaseQRankSum
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SIO_000300: 1.13e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 247
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variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66146
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.254e0

InbreedingCoeff
type: SiteQuality
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MQRankSum
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.927e1

VQSLOD
type: SiteQuality
SIO_000300: -6.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.97e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3017
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511578692786746e-5
allele num: 66156
num of homozygotes: 0

Other
type: Population
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South Asian
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.45e0

FS
type: SiteQuality
SIO_000300: 3.54e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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SIO_000300: -1.054e0

VQSLOD
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BaseQRankSum
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DP
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InbreedingCoeff
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.510710940568632e-5
allele num: 66194
num of homozygotes: 0

African
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Other
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.06134076857801e-5
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MQ
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FS
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ClippingRankSum
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QD
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VQSLOD
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DP
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 6.760672203979138e-4
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QD
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VQSLOD
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MQRankSum
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FS
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BaseQRankSum
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DP
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InbreedingCoeff
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ClippingRankSum
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MQ
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
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num of homozygotes: 0

Other
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66294
num of homozygotes: 0

East Asian
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
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FS
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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MQRankSum
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MQ
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InbreedingCoeff
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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Latino
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European (Finnish)
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African
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Other
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European (Non-Finnish)
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MQ
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DP
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ReadPosRankSum
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QD
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ClippingRankSum
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InbreedingCoeff
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FS
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VQSLOD
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MQRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.413345802286645e-4
allele num: 66298
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Latino
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East Asian
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South Asian
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European (Finnish)
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Other
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FS
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BaseQRankSum
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DP
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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VQSLOD
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MQ
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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East Asian
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Latino
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European (Non-Finnish)
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European (Finnish)
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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FS
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VQSLOD
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MQ
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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Latino
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African
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East Asian
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South Asian
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MQ
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SIO_000300: 5.962e1

FS
type: SiteQuality
SIO_000300: 1.676e0

ClippingRankSum
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SIO_000300: -7.7e-2

QD
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VQSLOD
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SIO_000300: 8.73e-1

InbreedingCoeff
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SIO_000300: -2.0e-4

BaseQRankSum
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SIO_000300: -2.062e0

DP
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SIO_000300: 1.958403e6

MQRankSum
type: SiteQuality
SIO_000300: 7.65e-1

ReadPosRankSum
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SIO_000300: 7.04e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 1.21300339640951e-4
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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QD
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FS
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BaseQRankSum
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SIO_000300: 7.48e-1

MQ
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SIO_000300: 5.984e1

DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 1.734304543877905e-4
allele num: 11532
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66098
num of homozygotes: 0

Other
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DP
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SIO_000300: 1.95041e6

MQ
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BaseQRankSum
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VQSLOD
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QD
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InbreedingCoeff
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SIO_000300: 5.999999999999999e-4

MQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-2

FS
type: SiteQuality
SIO_000300: 5.002e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e-2

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.515059693351918e-5
allele num: 66004
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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QD
type: SiteQuality
SIO_000300: 1.517e1

DP
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VQSLOD
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FS
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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SIO_000300: 8.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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SIO_000300: -1.281e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 2.318571759795966e-4
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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DP
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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FS
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VQSLOD
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QD
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ReadPosRankSum
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BaseQRankSum
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MQ
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SIO_000300: 5.998e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 3.484320557491289e-4
allele num: 11480
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65882
num of homozygotes: 0

VQSLOD
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InbreedingCoeff
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DP
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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QD
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FS
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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South Asian
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Other
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European (Non-Finnish)
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African
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ClippingRankSum
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QD
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MQRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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DP
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ReadPosRankSum
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FS
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.646361540994402e-5
allele num: 60740
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8004
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
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Latino
type: Population
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African
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South Asian
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MQ
type: SiteQuality
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FS
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MQRankSum
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ReadPosRankSum
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QD
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VQSLOD
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ClippingRankSum
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SIO_000300: 1.53e0

InbreedingCoeff
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SIO_000300: -6.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.472e0

DP
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SIO_000300: 1.373626e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 2

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 1.122838535818549e-4
allele num: 8906
num of homozygotes: 0

European (Finnish)
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allele count: 17
allele frequency: 5.126658624849216e-3
allele num: 3316
num of homozygotes: 0

Other
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.2453300124533e-4
allele num: 56210
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ReadPosRankSum
type: SiteQuality
SIO_000300: 9.78e-1

FS
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VQSLOD
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MQRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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SIO_000300: -8.24e-1

MQ
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SIO_000300: 5.889e1

QD
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 1.18427285646613e-4
allele num: 8444
num of homozygotes: 0

Other
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allele count: 0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63850
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 1.0275380189067e-4
allele num: 9732
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VQSLOD
type: SiteQuality
SIO_000300: -1.759e0

MQ
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SIO_000300: 5.883e1

MQRankSum
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SIO_000300: -5.73e-1

FS
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ReadPosRankSum
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BaseQRankSum
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SIO_000300: 4.88e-1

ClippingRankSum
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DP
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SIO_000300: 1.481887e6

InbreedingCoeff
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SIO_000300: -1.8e-3

QD
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SIO_000300: 9.550000000000001e0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63364
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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Other
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South Asian
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allele num: 16252
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East Asian
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allele num: 8396
num of homozygotes: 0

African
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allele frequency: 0.0e0
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QD
type: SiteQuality
SIO_000300: 3.97e0

MQ
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BaseQRankSum
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DP
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ClippingRankSum
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VQSLOD
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FS
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MQRankSum
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SIO_000300: 6.78e-1

InbreedingCoeff
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SIO_000300: -2.1e-3

ReadPosRankSum
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SIO_000300: 8.070000000000001e-1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64422
num of homozygotes: 0

Latino
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num of homozygotes: 0

East Asian
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African
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European (Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
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DP
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ReadPosRankSum
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VQSLOD
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QD
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MQRankSum
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FS
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MQ
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
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Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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Other
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African
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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FS
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DP
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MQRankSum
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QD
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ReadPosRankSum
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MQ
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 1.666666666666667e-1
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num of homozygotes: 0

East Asian
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European (Non-Finnish)
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South Asian
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Other
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African
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European (Finnish)
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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DP
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ClippingRankSum
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FS
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InbreedingCoeff
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MQRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
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East Asian
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Other
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allele num: 0
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Latino
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allele num: 0
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African
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allele frequency: NaN
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South Asian
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MQRankSum
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MQ
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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FS
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DP
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3736
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.106497313141182e-5
allele num: 16376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65768
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

BaseQRankSum
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SIO_000300: -2.076e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.23e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.664e0

MQRankSum
type: SiteQuality
SIO_000300: 5.19e-1

MQ
type: SiteQuality
SIO_000300: 5.756e1

DP
type: SiteQuality
SIO_000300: 2.195356e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.379e1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9616
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.431906614785992e-4
allele num: 16448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.597167775853162e-5
allele num: 65814
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.686587908269631e-5
allele num: 11512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

QD
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SIO_000300: 1.509e1

BaseQRankSum
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SIO_000300: 3.52e0

VQSLOD
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SIO_000300: 5.78e0

DP
type: SiteQuality
SIO_000300: 2.196297e6

MQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.85e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9616
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.71e-1

FS
type: SiteQuality
SIO_000300: 1.5565e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.54e-1

DP
type: SiteQuality
SIO_000300: 2.196728e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

QD
type: SiteQuality
SIO_000300: 1.927e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3531
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518602885345482e-5
allele num: 65850
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

VQSLOD
type: SiteQuality
SIO_000300: 1.6e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: 1.92e0

BaseQRankSum
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SIO_000300: -1.956e0

MQRankSum
type: SiteQuality
SIO_000300: -2.6e-1

DP
type: SiteQuality
SIO_000300: 2.19799e6

QD
type: SiteQuality
SIO_000300: 1.586e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517727051966974e-5
allele num: 65888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9622
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.496e0

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.961e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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DP
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.141e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65924
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.065752759917505e-5
allele num: 16486
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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DP
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VQSLOD
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ClippingRankSum
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QD
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MQRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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SIO_000300: 5.06e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516300227445034e-5
allele num: 65950
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9630
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.665511265164645e-5
allele num: 11540
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8604
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.066488716330988e-5
allele num: 16484
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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DP
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MQ
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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MQRankSum
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QD
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ClippingRankSum
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9624
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.065752759917505e-5
allele num: 16486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65958
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.732801940738174e-4
allele num: 11542
num of homozygotes: 0

BaseQRankSum
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SIO_000300: 1.71e0

VQSLOD
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SIO_000300: 1.24e0

MQ
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SIO_000300: 6.0e1

ClippingRankSum
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SIO_000300: -1.59e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.73e-1

DP
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SIO_000300: 2.215717e6

QD
type: SiteQuality
SIO_000300: 1.088e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
all individuals: 14911
bin: 9.75e1
variant carriers: 180

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

African
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allele count: 177
allele frequency: 1.838769997922294e-2
allele num: 9626
num of homozygotes: 3

Latino
type: Population
allele count: 6
allele frequency: 5.193905817174516e-4
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65958
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.486e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-2

MQRankSum
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SIO_000300: 2.07e-1

MQ
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SIO_000300: 5.97e1

ClippingRankSum
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SIO_000300: -1.44e-1

DP
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SIO_000300: 2.222894e6

BaseQRankSum
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SIO_000300: 3.38e0

VQSLOD
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SIO_000300: 4.66e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.86e-1

QD
type: SiteQuality
SIO_000300: 1.372e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66000
num of homozygotes: 0

South Asian
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allele count: 26
allele frequency: 1.576904415332363e-3
allele num: 16488
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.128e1

MQ
type: SiteQuality
SIO_000300: 5.961e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.73e-1

VQSLOD
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SIO_000300: 1.76e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

MQRankSum
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SIO_000300: -1.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.333e0

FS
type: SiteQuality
SIO_000300: 7.99e-1

DP
type: SiteQuality
SIO_000300: 2.224861e6

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 27
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GenotypeQuality
all individuals: 16348
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.655011251514626e-5
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66020
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.74e-1

QD
type: SiteQuality
SIO_000300: 8.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

BaseQRankSum
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SIO_000300: -2.418e0

MQRankSum
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SIO_000300: 8.2e-2

DP
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SIO_000300: 2.224787e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 81
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GenotypeQuality
all individuals: 21
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514646632940535e-5
allele num: 66022
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.634e0

ReadPosRankSum
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SIO_000300: 2.93e-1

FS
type: SiteQuality
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DP
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MQ
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QD
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VQSLOD
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MQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

BaseQRankSum
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SIO_000300: -2.235e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 61
allele frequency: 3.700109183549679e-3
allele num: 16486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66028
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InbreedingCoeff
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QD
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MQ
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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FS
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
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allele count: 5
allele frequency: 3.033244358165494e-4
allele num: 16484
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66022
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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European (Finnish)
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FS
type: SiteQuality
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BaseQRankSum
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MQ
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VQSLOD
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QD
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.066488716330988e-5
allele num: 16484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66020
num of homozygotes: 0

Latino
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num of homozygotes: 0

ClippingRankSum
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InbreedingCoeff
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MQRankSum
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DP
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FS
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ReadPosRankSum
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MQ
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BaseQRankSum
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3822
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8417
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16408
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4580
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3530
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2313
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514830187535977e-5
allele num: 66014
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.86e0

VQSLOD
type: SiteQuality
SIO_000300: 1.44e-1

QD
type: SiteQuality
SIO_000300: 1.303e1

FS
type: SiteQuality
SIO_000300: 4.683e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

MQ
type: SiteQuality
SIO_000300: 5.974e1

MQRankSum
type: SiteQuality
SIO_000300: 1.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.53e-1

DP
type: SiteQuality
SIO_000300: 2.225777e6

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16389
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3529
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8414
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4578
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5594
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14885
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2313
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3825
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.544903648042661e-5
allele num: 66008
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.213e1

DP
type: SiteQuality
SIO_000300: 2.225822e6

FS
type: SiteQuality
SIO_000300: 3.01e0

VQSLOD
type: SiteQuality
SIO_000300: 9.62e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.098e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5595
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3825
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8413
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16433
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4579
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2314
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14883
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3531
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9640
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514784294716432e-5
allele num: 66016
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.22e0

FS
type: SiteQuality
SIO_000300: 8.01e-1

DP
type: SiteQuality
SIO_000300: 2.225715e6

VQSLOD
type: SiteQuality
SIO_000300: -1.166e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.24e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

QD
type: SiteQuality
SIO_000300: 9.91e0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14882
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4579
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3530
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8416
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3825
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16440
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2314
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5590
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514830187535977e-5
allele num: 66014
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.877e0

VQSLOD
type: SiteQuality
SIO_000300: 1.45e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.6e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

DP
type: SiteQuality
SIO_000300: 2.225682e6

QD
type: SiteQuality
SIO_000300: 1.282e1

FS
type: SiteQuality
SIO_000300: 1.838e0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4578
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5589
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16456
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14889
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 2314
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8413
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3819
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3529
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.461165048543689e-4
allele num: 16480
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66014
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.15541242468315e-4
allele num: 9626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.36e-1

DP
type: SiteQuality
SIO_000300: 2.226403e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.08e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.69e-1

FS
type: SiteQuality
SIO_000300: 5.18e-1

QD
type: SiteQuality
SIO_000300: 1.329e1

MQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

VQSLOD
type: SiteQuality
SIO_000300: 4.47e0