3-197574248-TTTTTTTCTTTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574248
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574237
    reference: chr 3
allele count: 1
allele frequency: 8.289262089888757e-6
allele num: 120638
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4989
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5468
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3283
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5409
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2079
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7020
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4912
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1076
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5902
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1875
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2412
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1938
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: TTTTTTTCTTTC
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

3-197574250-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574250
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574250
    reference: chr 3
allele count: 1
allele frequency: 8.28363154406892e-6
allele num: 120720
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1329-30T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.867-30T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1329-30T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1329-30T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1245-30T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.104-30T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.114-30T>G
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4200
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5378
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3353
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5448
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5918
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2378
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2278
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2875
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6835
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

3-197574254-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574254
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574254
    reference: chr 3
allele count: 242
allele frequency: 2.002614984856258e-3
allele num: 120842
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1329-26T>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.114-26T>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.867-26T>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1329-26T>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.104-26T>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1329-26T>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1245-26T>C
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4032
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5934
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4549
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 9.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 3347
  bin: 6.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 8.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 4146
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2444
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5363
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5350
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 8.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4445
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5914
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5538
  bin: 9.75e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2219
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1319
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2259
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 1
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD

3-197574255-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574255
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574255
    reference: chr 3
allele count: 34
allele frequency: 2.815455192858681e-4
allele num: 120762
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1245-25C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.114-25C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1329-25C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.104-25C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1329-25C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.867-25C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1329-25C>T
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5464
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5925
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4230
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4453
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5958
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4565
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4167
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4059
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5373
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5346
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 40139
  bin: 9.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2219
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7315
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1247
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

3-197574259-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574259
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574259
    reference: chr 3
allele count: 35
allele frequency: 2.895673037147349e-4
allele num: 120870
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1329-21C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1329-21C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1245-21C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1329-21C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.114-21C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.104-21C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.867-21C>T
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5463
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5961
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5377
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4171
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4246
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4455
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5353
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5922
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1306
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40145
  bin: 9.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

3-197574266-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574266
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574266
    reference: chr 3
allele count: 33
allele frequency: 2.727498140342177e-4
allele num: 120990
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.114-14C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1245-14C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1329-14C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.867-14C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1329-14C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1329-14C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.104-14C>T
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 4243
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4270
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5928
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5379
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4557
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4453
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4268
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5466
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5961
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5350
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2253
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2216
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1306
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7704
  bin: 6.25e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

3-197574272-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574272
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574272
    reference: chr 3
allele count: 2
allele frequency: 1.650056101907465e-5
allele num: 121208
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.104-8T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.114-8T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.867-8T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1329-8T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1329-8T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1245-8T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1329-8T>G
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5461
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5338
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5960
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4271
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5924
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4547
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2375
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7950
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: c.1329-8T>G
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

3-197574273-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574273
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574273
    reference: chr 3
allele count: 2
allele frequency: 1.65000165000165e-5
allele num: 121212
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1329-7G>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1245-7G>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.114-7G>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1329-7G>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1329-7G>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.867-7G>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.104-7G>T
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5961
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4457
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5383
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5459
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2258
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2224
  bin: 7.75e1
  variant carriers: 0
hgvs: c.1329-7G>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

3-197574275-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574275
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574275
    reference: chr 3
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.104-5G>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.867-5G>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1329-5G>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.114-5G>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1329-5G>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1245-5G>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1329-5G>C
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4551
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4458
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5459
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5339
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5961
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2943
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1316
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2225
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2374
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
hgvs: c.1329-5G>C
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

3-197574293-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574293
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574293
    reference: chr 3
allele count: 12
allele frequency: 9.885981677980623e-5
allele num: 121384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.117C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.880C>T
  hgvsp: ENSP00000394609.2:p.Pro294Ser
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1342C>T
  hgvsp: ENSP00000393579.2:p.Pro448Ser
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1342C>T
  hgvsp: ENSP00000334375.4:p.Pro448Ser
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1258C>T
  hgvsp: ENSP00000394965.2:p.Pro420Ser
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1342C>T
  hgvsp: ENSP00000399751.2:p.Pro448Ser
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.127C>T
  hgvsp: ENSP00000439083.1:p.Pro43Ser
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4460
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4458
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5960
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4286
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4346
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5378
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5338
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5469
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 5922
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2260
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8103
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40184
  bin: 9.75e1
  variant carriers: 12
hgvs: p.Pro448Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-197574297-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574297
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574297
    reference: chr 3
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1346C>G
  hgvsp: ENSP00000399751.2:p.Ser449Cys
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1346C>G
  hgvsp: ENSP00000334375.4:p.Ser449Cys
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.131C>G
  hgvsp: ENSP00000439083.1:p.Ser44Cys
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1346C>G
  hgvsp: ENSP00000393579.2:p.Ser449Cys
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.884C>G
  hgvsp: ENSP00000394609.2:p.Ser295Cys
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.121C>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1262C>G
  hgvsp: ENSP00000394965.2:p.Ser421Cys
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4458
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5963
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4464
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4546
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5459
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40181
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8109
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser449Cys
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

3-197574300-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574300
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574300
    reference: chr 3
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1349C>T
  hgvsp: ENSP00000393579.2:p.Ser450Phe
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1349C>T
  hgvsp: ENSP00000334375.4:p.Ser450Phe
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.124C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.887C>T
  hgvsp: ENSP00000394609.2:p.Ser296Phe
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1349C>T
  hgvsp: ENSP00000399751.2:p.Ser450Phe
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.134C>T
  hgvsp: ENSP00000439083.1:p.Ser45Phe
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1265C>T
  hgvsp: ENSP00000394965.2:p.Ser422Phe
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4353
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5459
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4545
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5963
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5338
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4458
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1246
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8115
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2373
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2260
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser450Phe
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum

3-197574301-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574301
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574301
    reference: chr 3
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1350C>T
  hgvsp: ENST00000425562.2:c.1350C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.125C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1350C>T
  hgvsp: ENST00000438796.2:c.1350C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1350C>T
  hgvsp: ENST00000334859.4:c.1350C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.135C>T
  hgvsp: ENST00000536618.1:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.888C>T
  hgvsp: ENST00000441090.2:c.888C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1266C>T
  hgvsp: ENST00000414675.2:c.1266C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5338
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5459
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4545
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4458
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5962
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8116
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2226
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2373
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2261
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser450Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

3-197574318-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574318
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574318
    reference: chr 3
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.905C>T
  hgvsp: ENSP00000394609.2:p.Ala302Val
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1367C>T
  hgvsp: ENSP00000393579.2:p.Ala456Val
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1367C>T
  hgvsp: ENSP00000399751.2:p.Ala456Val
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.142C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1367C>T
  hgvsp: ENSP00000334375.4:p.Ala456Val
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1283C>T
  hgvsp: ENSP00000394965.2:p.Ala428Val
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.152C>T
  hgvsp: ENSP00000439083.1:p.Ala51Val
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5338
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5962
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4545
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4452
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5458
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5379
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8114
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40181
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1246
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala456Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

3-197574319-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574319
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574319
    reference: chr 3
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1368A>G
  hgvsp: ENST00000425562.2:c.1368A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1368A>G
  hgvsp: ENST00000438796.2:c.1368A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.906A>G
  hgvsp: ENST00000441090.2:c.906A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.153A>G
  hgvsp: ENST00000536618.1:c.153A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.143A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1284A>G
  hgvsp: ENST00000414675.2:c.1284A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1368A>G
  hgvsp: ENST00000334859.4:c.1368A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5962
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5338
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4360
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5379
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4292
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4449
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4546
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5458
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2260
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2961
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40180
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ala456Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQ

3-197574320-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574320
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574320
    reference: chr 3
allele count: 4
allele frequency: 3.29549012176836e-5
allele num: 121378
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1369A>G
  hgvsp: ENSP00000399751.2:p.Ser457Gly
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.907A>G
  hgvsp: ENSP00000394609.2:p.Ser303Gly
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1369A>G
  hgvsp: ENSP00000334375.4:p.Ser457Gly
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1285A>G
  hgvsp: ENSP00000394965.2:p.Ser429Gly
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.154A>G
  hgvsp: ENSP00000439083.1:p.Ser52Gly
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1369A>G
  hgvsp: ENSP00000393579.2:p.Ser457Gly
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.144A>G
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5462
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5338
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5378
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4441
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5962
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4363
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2960
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1246
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2225
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser457Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD

3-197574332-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574332
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574332
    reference: chr 3
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1296+1G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1380+1G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.155+1G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1380+1G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1380+1G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.165+1G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.918+1G>A
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5962
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5920
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4349
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5459
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4460
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4544
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5338
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5379
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2222
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40180
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
hgvs: c.1380+1G>A
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ

3-197574334-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574334
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574334
    reference: chr 3
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.918+3A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1380+3A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1380+3A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.165+3A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1380+3A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1296+3A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.155+3A>G
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5920
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5962
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5338
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4460
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4544
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5459
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2949
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40180
  bin: 9.75e1
  variant carriers: 1
hgvs: c.1380+3A>G
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD

3-197574337-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574337
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574337
    reference: chr 3
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1380+6G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1380+6G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1296+6G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1380+6G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.165+6G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.155+6G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.918+6G>A
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5962
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4377
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4543
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4341
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5340
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5459
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2222
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40180
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.25e1
  variant carriers: 0
hgvs: c.1380+6G>A
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

3-197574354-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574354
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574354
    reference: chr 3
allele count: 61
allele frequency: 5.028522438750948e-4
allele num: 121308
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1380+23A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.165+23A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1380+23A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.155+23A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.918+23A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1380+23A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1296+23A>G
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4274
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4080
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5916
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5372
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4251
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4460
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3353
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5952
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5498
  bin: 9.75e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 40191
  bin: 9.75e1
  variant carriers: 61
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1297
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7664
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

3-197574374-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574374
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574374
    reference: chr 3
allele count: 1
allele frequency: 8.252731654177533e-6
allele num: 121172
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.165+43G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1380+43G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.918+43G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1380+43G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.155+43G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1380+43G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1296+43G>A
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4016
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5460
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5957
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4470
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1273
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2253
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40177
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 451
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2195
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

3-197574377-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574377
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574377
    reference: chr 3
allele count: 3
allele frequency: 2.476800634060962e-5
allele num: 121124
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.165+46G>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1380+46G>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1380+46G>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1296+46G>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.918+46G>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1380+46G>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.155+46G>T
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5322
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3485
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5957
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1272
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP

3-197574378-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574378
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574379
    reference: chr 3
allele count: 3
allele frequency: 2.479174930583102e-5
allele num: 121008
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.165+55dupT
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.155+55dupT
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1296+55dupT
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1380+55dupT
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.918+55dupT
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1380+55dupT
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1380+55dupT
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5323
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4504
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5460
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2163
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

3-197574378-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574378
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574377
    reference: chr 3
allele count: 1
allele frequency: 8.263916435277007e-6
allele num: 121008
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1380+55delT
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.155+55delT
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.165+55delT
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1296+55delT
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1380+55delT
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1380+55delT
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.918+55delT
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3492
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5323
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3895
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5960
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5460
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5376
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4504
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2368
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2565
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4483
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40172
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: AT
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: FS

3-197574379-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574379
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574379
    reference: chr 3
allele count: 1
allele frequency: 8.271161767381846e-6
allele num: 120902
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.918+48T>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1380+48T>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.165+48T>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.155+48T>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1380+48T>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1296+48T>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1380+48T>C
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5461
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5962
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3536
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5912
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3831
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4465
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2094
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40164
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2360
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2193
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

3-197574695-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574695
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574695
    reference: chr 3
allele count: 3
allele frequency: 2.540435261241426e-5
allele num: 118090
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.919-48G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1381-48G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.156-48G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1297-48G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.166-48G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1381-48G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1381-48G>A
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5358
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15779
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6081
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14416
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2507
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8699
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2772
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3020
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6296
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2200
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3816
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2243
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

3-197574706-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574706
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574706
    reference: chr 3
allele count: 1
allele frequency: 8.43668269636379e-6
allele num: 118530
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.919-37T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1381-37T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1381-37T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1297-37T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.166-37T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.156-37T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1381-37T>G
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2505
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6225
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21539
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15337
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4248
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2739
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1639
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2079
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1239
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 998
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ

3-197574717-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574717
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574717
    reference: chr 3
allele count: 1
allele frequency: 8.391092016715055e-6
allele num: 119174
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1297-26T>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.156-26T>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.166-26T>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1381-26T>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.2T>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1381-26T>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1381-26T>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.919-26T>C
  variant of: http://identifiers.org/hgnc/28637
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16183
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25093
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33693
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6523
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2786
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/3-197574721-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574721
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574721
    reference: chr 3
allele count: 1
allele frequency: 8.365260745177427e-6
allele num: 119542
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1381-22C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.156-22C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.6C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1381-22C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.166-22C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1381-22C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1297-22C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.919-22C>A
  variant of: http://identifiers.org/hgnc/28637
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6584
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25604
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2530
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16693
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2813
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6521
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2329
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1054
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/3-197574722-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574722
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574721
    reference: chr 3
allele count: 5
allele frequency: 4.177039648460343e-5
allele num: 119702
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.8delC
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.919-20delC
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.166-20delC
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1297-20delC
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1381-20delC
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.156-20delC
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1381-20delC
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1381-20delC
  variant of: http://identifiers.org/hgnc/28637
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6533
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16790
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 967
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35218
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2349
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: AC
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

http://identifiers.org/exac.variant/3-197574724-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574724
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574724
    reference: chr 3
allele count: 3
allele frequency: 2.501250625312656e-5
allele num: 119940
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.919-19A>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.9A>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1381-19A>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1297-19A>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.156-19A>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1381-19A>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.166-19A>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1381-19A>C
  variant of: http://identifiers.org/hgnc/28637
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26136
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6583
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1887
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7029
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

3-197574724-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574724
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574724
    reference: chr 3
allele count: 1
allele frequency: 8.337502084375522e-6
allele num: 119940
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.166-19A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1381-19A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1381-19A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1297-19A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.919-19A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.9A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1381-19A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.156-19A>G
  variant of: http://identifiers.org/hgnc/28637
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6583
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6525
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7029
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2853
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

3-197574729-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574729
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574729
    reference: chr 3
allele count: 2
allele frequency: 1.662123529020677e-5
allele num: 120328
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.919-14C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1297-14C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.166-14C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.14C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1381-14C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1381-14C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1381-14C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.156-14C>T
  variant of: http://identifiers.org/hgnc/28637
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26532
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6662
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17209
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36161
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2363
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/3-197574731-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574731
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574731
    reference: chr 3
allele count: 2
allele frequency: 1.658869977771142e-5
allele num: 120564
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1297-12C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.156-12C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1381-12C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1381-12C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.919-12C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.16C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.166-12C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1381-12C>A
  variant of: http://identifiers.org/hgnc/28637
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26636
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum

3-197574732-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574732
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574732
    reference: chr 3
allele count: 1
allele frequency: 8.289949265510494e-6
allele num: 120628
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1381-11T>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1381-11T>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.17T>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1381-11T>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1297-11T>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.919-11T>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.156-11T>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.166-11T>A
  variant of: http://identifiers.org/hgnc/28637
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26720
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6529
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36786
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7192
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1895
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2866
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

3-197574732-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574732
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574732
    reference: chr 3
allele count: 1
allele frequency: 8.289949265510494e-6
allele num: 120628
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1381-11T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1381-11T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1381-11T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.156-11T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.17T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1297-11T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.919-11T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.166-11T>G
  variant of: http://identifiers.org/hgnc/28637
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26720
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7192
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6529
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36786
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/3-197574743-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574743
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574743
    reference: chr 3
allele count: 1
allele frequency: 8.26255081468751e-6
allele num: 121028
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1381C>A
  hgvsp: ENSP00000393579.2:p.Leu461Met
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1297C>A
  hgvsp: ENSP00000394965.2:p.Leu433Met
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.156C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.166C>A
  hgvsp: ENSP00000439083.1:p.Leu56Met
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1381C>A
  hgvsp: ENSP00000334375.4:p.Leu461Met
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.919C>A
  hgvsp: ENSP00000394609.2:p.Leu307Met
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.28C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1381C>A
  hgvsp: ENSP00000399751.2:p.Leu461Met
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26605
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37156
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2422
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu461Met
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/3-197574771-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574771
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574771
    reference: chr 3
allele count: 1
allele frequency: 8.244974687927709e-6
allele num: 121286
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1409A>C
  hgvsp: ENSP00000399751.2:p.Gln470Pro
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.194A>C
  hgvsp: ENSP00000439083.1:p.Gln65Pro
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1325A>C
  hgvsp: ENSP00000394965.2:p.Gln442Pro
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1409A>C
  hgvsp: ENSP00000393579.2:p.Gln470Pro
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1409A>C
  hgvsp: ENSP00000334375.4:p.Gln470Pro
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.184A>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.947A>C
  hgvsp: ENSP00000394609.2:p.Gln316Pro
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.56A>C
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18437
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7325
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2431
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gln470Pro
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

3-197574771-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574771
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574771
    reference: chr 3
allele count: 1
allele frequency: 8.244974687927709e-6
allele num: 121286
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1325A>G
  hgvsp: ENSP00000394965.2:p.Gln442Arg
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1409A>G
  hgvsp: ENSP00000334375.4:p.Gln470Arg
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1409A>G
  hgvsp: ENSP00000393579.2:p.Gln470Arg
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.194A>G
  hgvsp: ENSP00000439083.1:p.Gln65Arg
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.184A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1409A>G
  hgvsp: ENSP00000399751.2:p.Gln470Arg
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.947A>G
  hgvsp: ENSP00000394609.2:p.Gln316Arg
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.56A>G
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18437
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37548
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6529
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln470Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

3-197574779-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574779
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574779
    reference: chr 3
allele count: 8
allele frequency: 6.594348643212767e-5
allele num: 121316
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1417G>C
  hgvsp: ENSP00000334375.4:p.Glu473Gln
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.202G>C
  hgvsp: ENSP00000439083.1:p.Glu68Gln
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1417G>C
  hgvsp: ENSP00000393579.2:p.Glu473Gln
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.955G>C
  hgvsp: ENSP00000394609.2:p.Glu319Gln
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.64G>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1417G>C
  hgvsp: ENSP00000399751.2:p.Glu473Gln
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1333G>C
  hgvsp: ENSP00000394965.2:p.Glu445Gln
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.192G>C
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26313
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18513
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2553
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7327
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1892
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2885
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu473Gln
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP

3-197574787-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574787
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574787
    reference: chr 3
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1425A>G
  hgvsp: ENST00000425562.2:c.1425A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1425A>G
  hgvsp: ENST00000438796.2:c.1425A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.200A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1425A>G
  hgvsp: ENST00000334859.4:c.1425A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1341A>G
  hgvsp: ENST00000414675.2:c.1341A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.963A>G
  hgvsp: ENST00000441090.2:c.963A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.210A>G
  hgvsp: ENST00000536618.1:c.210A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.72A>G
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26299
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7343
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu475Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-197574789-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574789
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574789
    reference: chr 3
allele count: 17
allele frequency: 1.401114297959318e-4
allele num: 121332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.202T>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1427T>A
  hgvsp: ENSP00000334375.4:p.Val476Glu
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.965T>A
  hgvsp: ENSP00000394609.2:p.Val322Glu
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1427T>A
  hgvsp: ENSP00000393579.2:p.Val476Glu
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.74T>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1343T>A
  hgvsp: ENSP00000394965.2:p.Val448Glu
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.212T>A
  hgvsp: ENSP00000439083.1:p.Val71Glu
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1427T>A
  hgvsp: ENSP00000399751.2:p.Val476Glu
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26287
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1056
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2424
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1887
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val476Glu
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

3-197574791-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574791
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574791
    reference: chr 3
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1429G>A
  hgvsp: ENSP00000393579.2:p.Glu477Lys
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.214G>A
  hgvsp: ENSP00000439083.1:p.Glu72Lys
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1429G>A
  hgvsp: ENSP00000334375.4:p.Glu477Lys
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.967G>A
  hgvsp: ENSP00000394609.2:p.Glu323Lys
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1429G>A
  hgvsp: ENSP00000399751.2:p.Glu477Lys
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.204G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.76G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1345G>A
  hgvsp: ENSP00000394965.2:p.Glu449Lys
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18580
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1888
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6526
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7344
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu477Lys
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

3-197574794-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574794
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574794
    reference: chr 3
allele count: 9
allele frequency: 7.416563658838072e-5
allele num: 121350
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.970C>T
  hgvsp: ENSP00000394609.2:p.Arg324Cys
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1432C>T
  hgvsp: ENSP00000334375.4:p.Arg478Cys
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1432C>T
  hgvsp: ENSP00000399751.2:p.Arg478Cys
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.207C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.79C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1348C>T
  hgvsp: ENSP00000394965.2:p.Arg450Cys
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1432C>T
  hgvsp: ENSP00000393579.2:p.Arg478Cys
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.217C>T
  hgvsp: ENSP00000439083.1:p.Arg73Cys
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26278
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2553
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1056
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37640
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg478Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP

3-197574795-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574795
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574795
    reference: chr 3
allele count: 14
allele frequency: 1.153668666359022e-4
allele num: 121352
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1433G>A
  hgvsp: ENSP00000334375.4:p.Arg478His
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.218G>A
  hgvsp: ENSP00000439083.1:p.Arg73His
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.208G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.80G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.971G>A
  hgvsp: ENSP00000394609.2:p.Arg324His
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1433G>A
  hgvsp: ENSP00000399751.2:p.Arg478His
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1349G>A
  hgvsp: ENSP00000394965.2:p.Arg450His
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1433G>A
  hgvsp: ENSP00000393579.2:p.Arg478His
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6861
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2551
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26255
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6534
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg478His
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

3-197574800-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574800
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574800
    reference: chr 3
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1438C>G
  hgvsp: ENSP00000334375.4:p.Arg480Gly
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1438C>G
  hgvsp: ENSP00000393579.2:p.Arg480Gly
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.223C>G
  hgvsp: ENSP00000439083.1:p.Arg75Gly
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.976C>G
  hgvsp: ENSP00000394609.2:p.Arg326Gly
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.213C>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1438C>G
  hgvsp: ENSP00000399751.2:p.Arg480Gly
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.85C>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1354C>G
  hgvsp: ENSP00000394965.2:p.Arg452Gly
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6871
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18615
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26239
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2553
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2883
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37658
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2427
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6523
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg480Gly
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD

3-197574801-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574801
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574801
    reference: chr 3
allele count: 5
allele frequency: 4.119905736556747e-5
allele num: 121362
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.224G>A
  hgvsp: ENSP00000439083.1:p.Arg75Gln
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1355G>A
  hgvsp: ENSP00000394965.2:p.Arg452Gln
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.86G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1439G>A
  hgvsp: ENSP00000393579.2:p.Arg480Gln
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.977G>A
  hgvsp: ENSP00000394609.2:p.Arg326Gln
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1439G>A
  hgvsp: ENSP00000334375.4:p.Arg480Gln
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1439G>A
  hgvsp: ENSP00000399751.2:p.Arg480Gln
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.214G>A
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6873
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26237
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2550
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7351
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2881
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg480Gln
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

3-197574840-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574840
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574840
    reference: chr 3
allele count: 3
allele frequency: 2.472024918011174e-5
allele num: 121358
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1478A>G
  hgvsp: ENSP00000399751.2:p.Glu493Gly
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1478A>G
  hgvsp: ENSP00000334375.4:p.Glu493Gly
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.263A>G
  hgvsp: ENSP00000439083.1:p.Glu88Gly
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1478A>G
  hgvsp: ENSP00000393579.2:p.Glu493Gly
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.1016A>G
  hgvsp: ENSP00000394609.2:p.Glu339Gly
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.125A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000395309
  ensembl transcript: ENST00000452660
  gene symbol: LRCH3
  hgvsc: ENST00000452660.1:c.11A>G
  hgvsp: ENSP00000395309.1:p.Glu4Gly
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.253A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1394A>G
  hgvsp: ENSP00000394965.2:p.Glu465Gly
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26165
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6866
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1890
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu493Gly
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/3-197574843-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574843
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574843
    reference: chr 3
allele count: 5
allele frequency: 4.120041530018623e-5
allele num: 121358
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.266A>C
  hgvsp: ENSP00000439083.1:p.Lys89Thr
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.128A>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.256A>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1397A>C
  hgvsp: ENSP00000394965.2:p.Lys466Thr
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1481A>C
  hgvsp: ENSP00000393579.2:p.Lys494Thr
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1481A>C
  hgvsp: ENSP00000334375.4:p.Lys494Thr
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1481A>C
  hgvsp: ENSP00000399751.2:p.Lys494Thr
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.1019A>C
  hgvsp: ENSP00000394609.2:p.Lys340Thr
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000395309
  ensembl transcript: ENST00000452660
  gene symbol: LRCH3
  hgvsc: ENST00000452660.1:c.14A>C
  hgvsp: ENSP00000395309.1:p.Lys5Thr
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Lys494Thr
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-197574845-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574845
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574845
    reference: chr 3
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.258A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1399A>G
  hgvsp: ENSP00000394965.2:p.Ile467Val
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.1021A>G
  hgvsp: ENSP00000394609.2:p.Ile341Val
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.268A>G
  hgvsp: ENSP00000439083.1:p.Ile90Val
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1483A>G
  hgvsp: ENSP00000334375.4:p.Ile495Val
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000395309
  ensembl transcript: ENST00000452660
  gene symbol: LRCH3
  hgvsc: ENST00000452660.1:c.16A>G
  hgvsp: ENSP00000395309.1:p.Ile6Val
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.130A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1483A>G
  hgvsp: ENSP00000399751.2:p.Ile495Val
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1483A>G
  hgvsp: ENSP00000393579.2:p.Ile495Val
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6867
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7334
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile495Val
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

3-197574864-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574864
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574864
    reference: chr 3
allele count: 1
allele frequency: 8.244023083264634e-6
allele num: 121300
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1418A>G
  hgvsp: ENSP00000394965.2:p.Gln473Arg
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1502A>G
  hgvsp: ENSP00000399751.2:p.Gln501Arg
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1502A>G
  hgvsp: ENSP00000393579.2:p.Gln501Arg
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.287A>G
  hgvsp: ENSP00000439083.1:p.Gln96Arg
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1502A>G
  hgvsp: ENSP00000334375.4:p.Gln501Arg
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.277A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000395309
  ensembl transcript: ENST00000452660
  gene symbol: LRCH3
  hgvsc: ENST00000452660.1:c.35A>G
  hgvsp: ENSP00000395309.1:p.Gln12Arg
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.149A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.1040A>G
  hgvsp: ENSP00000394609.2:p.Gln347Arg
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26046
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2866
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gln501Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

3-197574872-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574872
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574872
    reference: chr 3
allele count: 7
allele frequency: 5.773767300681305e-5
allele num: 121238
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1510G>C
  hgvsp: ENSP00000393579.2:p.Ala504Pro
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000395309
  ensembl transcript: ENST00000452660
  gene symbol: LRCH3
  hgvsc: ENST00000452660.1:c.43G>C
  hgvsp: ENSP00000395309.1:p.Ala15Pro
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000400164
  ensembl transcript: ENST00000433298
  gene symbol: LRCH3
  hgvsc: ENST00000433298.1:c.1G>C
  hgvsp: ENSP00000400164.1:p.Ala1?
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1510G>C
  hgvsp: ENSP00000399751.2:p.Ala504Pro
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.295G>C
  hgvsp: ENSP00000439083.1:p.Ala99Pro
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.1048G>C
  hgvsp: ENSP00000394609.2:p.Ala350Pro
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.285G>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1510G>C
  hgvsp: ENSP00000334375.4:p.Ala504Pro
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1426G>C
  hgvsp: ENSP00000394965.2:p.Ala476Pro
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.157G>C
  variant of: http://identifiers.org/hgnc/28637
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25909
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6856
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18690
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala1?
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum

3-197574881-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574881
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574881
    reference: chr 3
allele count: 41
allele frequency: 3.384290289563179e-4
allele num: 121148
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000400164
  ensembl transcript: ENST00000433298
  gene symbol: LRCH3
  hgvsc: ENST00000433298.1:c.10G>A
  hgvsp: ENSP00000400164.1:p.Asp4Asn
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1519G>A
  hgvsp: ENSP00000393579.2:p.Asp507Asn
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.166G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.294G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.304G>A
  hgvsp: ENSP00000439083.1:p.Asp102Asn
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1519G>A
  hgvsp: ENSP00000399751.2:p.Asp507Asn
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000395309
  ensembl transcript: ENST00000452660
  gene symbol: LRCH3
  hgvsc: ENST00000452660.1:c.52G>A
  hgvsp: ENSP00000395309.1:p.Asp18Asn
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1519G>A
  hgvsp: ENSP00000334375.4:p.Asp507Asn
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1435G>A
  hgvsp: ENSP00000394965.2:p.Asp479Asn
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.1057G>A
  hgvsp: ENSP00000394609.2:p.Asp353Asn
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 18669
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6830
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp507Asn
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

3-197574891-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574891
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574891
    reference: chr 3
allele count: 1
allele frequency: 8.268426187759421e-6
allele num: 120942
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1445A>G
  hgvsp: ENSP00000394965.2:p.Lys482Arg
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1529A>G
  hgvsp: ENSP00000334375.4:p.Lys510Arg
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1529A>G
  hgvsp: ENSP00000393579.2:p.Lys510Arg
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.304A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.1067A>G
  hgvsp: ENSP00000394609.2:p.Lys356Arg
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000400164
  ensembl transcript: ENST00000433298
  gene symbol: LRCH3
  hgvsc: ENST00000433298.1:c.20A>G
  hgvsp: ENSP00000400164.1:p.Lys7Arg
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000395309
  ensembl transcript: ENST00000452660
  gene symbol: LRCH3
  hgvsc: ENST00000452660.1:c.62A>G
  hgvsp: ENSP00000395309.1:p.Lys21Arg
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.176A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.314A>G
  hgvsp: ENSP00000439083.1:p.Lys105Arg
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1529A>G
  hgvsp: ENSP00000399751.2:p.Lys510Arg
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18563
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25106
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys510Arg
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-197574899-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574899
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574899
    reference: chr 3
allele count: 1
allele frequency: 8.281162012653616e-6
allele num: 120756
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1530+7C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1530+7C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.177+7C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.1068+7C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000400164
  ensembl transcript: ENST00000433298
  gene symbol: LRCH3
  hgvsc: ENST00000433298.1:c.21+7C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1446+7C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.315+7C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000395309
  ensembl transcript: ENST00000452660
  gene symbol: LRCH3
  hgvsc: ENST00000452660.1:c.63+7C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.312C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1530+7C>T
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24306
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 2.75e1
  variant carriers: 0
hgvs: c.1530+7C>T
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

3-197574900-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574900
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574900
    reference: chr 3
allele count: 2
allele frequency: 1.656479318855704e-5
allele num: 120738
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1530+8G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1446+8G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000400164
  ensembl transcript: ENST00000433298
  gene symbol: LRCH3
  hgvsc: ENST00000433298.1:c.21+8G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.315+8G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1530+8G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1530+8G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.1068+8G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.313G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.177+8G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000395309
  ensembl transcript: ENST00000452660
  gene symbol: LRCH3
  hgvsc: ENST00000452660.1:c.63+8G>A
  variant of: http://identifiers.org/hgnc/28637
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6738
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24172
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 9.25e1
  variant carriers: 0
hgvs: c.1530+8G>A
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-197574907-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574907
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574907
    reference: chr 3
allele count: 1
allele frequency: 8.292148993333113e-6
allele num: 120596
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.177+15T>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.1068+15T>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1446+15T>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1530+15T>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000400164
  ensembl transcript: ENST00000433298
  gene symbol: LRCH3
  hgvsc: ENST00000433298.1:c.21+15T>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000395309
  ensembl transcript: ENST00000452660
  gene symbol: LRCH3
  hgvsc: ENST00000452660.1:c.63+15T>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.320T>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1530+15T>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.315+15T>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1530+15T>C
  variant of: http://identifiers.org/hgnc/28637
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17710
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23117
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6865
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2760
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/3-197574912-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574912
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574912
    reference: chr 3
allele count: 741
allele frequency: 6.156837329876863e-3
allele num: 120354
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.325C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000395309
  ensembl transcript: ENST00000452660
  gene symbol: LRCH3
  hgvsc: ENST00000452660.1:c.63+20C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1446+20C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1530+20C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.177+20C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1530+20C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.1068+20C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1530+20C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.315+20C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000400164
  ensembl transcript: ENST00000433298
  gene symbol: LRCH3
  hgvsc: ENST00000433298.1:c.21+20C>A
  variant of: http://identifiers.org/hgnc/28637
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 4.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 6.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 3556
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 9.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 3.75e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16920
  bin: 2.75e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 20518
  bin: 2.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 4.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 5.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 6656
  bin: 3.25e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 3499
  bin: 1.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1594
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1174
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 20
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

3-197574920-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574920
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574920
    reference: chr 3
allele count: 16
allele frequency: 1.330738393466075e-4
allele num: 120234
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.1068+28G>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.315+28G>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1530+28G>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.177+28G>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.333G>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1530+28G>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000395309
  ensembl transcript: ENST00000452660
  gene symbol: LRCH3
  hgvsc: ENST00000452660.1:c.63+28G>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1530+28G>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1446+28G>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000400164
  ensembl transcript: ENST00000433298
  gene symbol: LRCH3
  hgvsc: ENST00000433298.1:c.21+28G>C
  variant of: http://identifiers.org/hgnc/28637
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4524
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17891
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7320
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6250
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15367
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3032
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25841
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/3-197574924-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574924
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574924
    reference: chr 3
allele count: 1
allele frequency: 8.337502084375522e-6
allele num: 119940
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1446+32C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000395309
  ensembl transcript: ENST00000452660
  gene symbol: LRCH3
  hgvsc: ENST00000452660.1:c.63+32C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.177+32C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.315+32C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000400164
  ensembl transcript: ENST00000433298
  gene symbol: LRCH3
  hgvsc: ENST00000433298.1:c.21+32C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1530+32C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.337C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1530+32C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.1068+32C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1530+32C>A
  variant of: http://identifiers.org/hgnc/28637
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5940
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9411
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4728
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17292
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13939
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1773
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1892
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22347
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

3-197574929-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574929
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574929
    reference: chr 3
allele count: 1
allele frequency: 8.351846593281774e-6
allele num: 119734
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1530+37T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.342T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1530+37T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1530+37T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.315+37T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1446+37T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000395309
  ensembl transcript: ENST00000452660
  gene symbol: LRCH3
  hgvsc: ENST00000452660.1:c.63+37T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.177+37T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000400164
  ensembl transcript: ENST00000433298
  gene symbol: LRCH3
  hgvsc: ENST00000433298.1:c.21+37T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.1068+37T>G
  variant of: http://identifiers.org/hgnc/28637
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17456
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10851
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4880
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6466
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2553
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3866
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/3-197574932-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574932
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574932
    reference: chr 3
allele count: 13
allele frequency: 1.089379388941961e-4
allele num: 119334
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000395309
  ensembl transcript: ENST00000452660
  gene symbol: LRCH3
  hgvsc: ENST00000452660.1:c.63+40C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1530+40C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.345C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.177+40C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1530+40C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.315+40C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1446+40C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1530+40C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.1068+40C>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000400164
  ensembl transcript: ENST00000433298
  gene symbol: LRCH3
  hgvsc: ENST00000433298.1:c.21+40C>A
  variant of: http://identifiers.org/hgnc/28637
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4904
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11919
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5332
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11322
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1755
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4901
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2816
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ

3-197574936-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574936
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574936
    reference: chr 3
allele count: 52098
allele frequency: 4.435684364676634e-1
allele num: 117452
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.315+44G>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1530+44G>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.349G>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1530+44G>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000400164
  ensembl transcript: ENST00000433298
  gene symbol: LRCH3
  hgvsc: ENST00000433298.1:c.21+44G>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.1068+44G>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1446+44G>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.177+44G>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1530+44G>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000395309
  ensembl transcript: ENST00000452660
  gene symbol: LRCH3
  hgvsc: ENST00000452660.1:c.63+44G>C
  variant of: http://identifiers.org/hgnc/28637
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6380
  bin: 3.25e1
  variant carriers: 4787
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 5.25e1
  variant carriers: 537
genotype depth: GenotypeDepth
  all individuals: 11937
  bin: 1.75e1
  variant carriers: 7583
genotype depth: GenotypeDepth
  all individuals: 5192
  bin: 1.25e1
  variant carriers: 2995
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 7.5e0
  variant carriers: 430
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 9.75e1
  variant carriers: 971
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 139
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 153
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.25e1
  variant carriers: 273
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 4.75e1
  variant carriers: 820
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 413
genotype depth: GenotypeDepth
  all individuals: 14291
  bin: 2.25e1
  variant carriers: 9349
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 3.75e1
  variant carriers: 2690
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.25e1
  variant carriers: 211
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 4.25e1
  variant carriers: 1366
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 6.75e1
  variant carriers: 281
genotype depth: GenotypeDepth
  all individuals: 10607
  bin: 2.75e1
  variant carriers: 7360
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 175
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 6.25e1
  variant carriers: 362
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 7.5e0
  variant carriers: 102
genotype quality: GenotypeQuality
  all individuals: 1054
  bin: 7.25e1
  variant carriers: 559
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 2.5e0
  variant carriers: 101
genotype quality: GenotypeQuality
  all individuals: 2318
  bin: 4.75e1
  variant carriers: 787
num of homozygotes: 11995
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum

3-197574942-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197574942
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197574942
    reference: chr 3
allele count: 1
allele frequency: 8.502967535669949e-6
allele num: 117606
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1446+50A>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000400164
  ensembl transcript: ENST00000433298
  gene symbol: LRCH3
  hgvsc: ENST00000433298.1:c.21+50A>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000395309
  ensembl transcript: ENST00000452660
  gene symbol: LRCH3
  hgvsc: ENST00000452660.1:c.63+50A>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.177+50A>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1530+50A>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1530+50A>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000494069
  gene symbol: LRCH3
  hgvsc: ENST00000494069.1:n.355A>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.315+50A>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.1068+50A>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1530+50A>T
  variant of: http://identifiers.org/hgnc/28637
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7334
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13915
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4927
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3423
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6299
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2327
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

3-197579383-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197579383
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197579383
    reference: chr 3
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.178-49T>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000395309
  ensembl transcript: ENST00000452660
  gene symbol: LRCH3
  hgvsc: ENST00000452660.1:c.64-49T>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1531-49T>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.316-49T>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1531-49T>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000481048
  gene symbol: LRCH3
  hgvsc: ENST00000481048.1:n.185T>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000400164
  ensembl transcript: ENST00000433298
  gene symbol: LRCH3
  hgvsc: ENST00000433298.1:c.22-49T>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1447-49T>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1531-49T>C
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.1069-49T>C
  variant of: http://identifiers.org/hgnc/28637
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6799
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9350
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5683
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2370
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

3-197579388-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197579388
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197579388
    reference: chr 3
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1531-44G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.178-44G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000395309
  ensembl transcript: ENST00000452660
  gene symbol: LRCH3
  hgvsc: ENST00000452660.1:c.64-44G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1531-44G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.1069-44G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000400164
  ensembl transcript: ENST00000433298
  gene symbol: LRCH3
  hgvsc: ENST00000433298.1:c.22-44G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1447-44G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000481048
  gene symbol: LRCH3
  hgvsc: ENST00000481048.1:n.190G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1531-44G>A
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.316-44G>A
  variant of: http://identifiers.org/hgnc/28637
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5705
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6691
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6799
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3460
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9349
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3801
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3282
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1636
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS

3-197579389-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197579389
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197579389
    reference: chr 3
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.178-43C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1447-43C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1531-43C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.1069-43C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.316-43C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1531-43C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000481048
  gene symbol: LRCH3
  hgvsc: ENST00000481048.1:n.191C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1531-43C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000395309
  ensembl transcript: ENST00000452660
  gene symbol: LRCH3
  hgvsc: ENST00000452660.1:c.64-43C>T
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000400164
  ensembl transcript: ENST00000433298
  gene symbol: LRCH3
  hgvsc: ENST00000433298.1:c.22-43C>T
  variant of: http://identifiers.org/hgnc/28637
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5565
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7216
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5712
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6800
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6690
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9350
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

3-197579398-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197579398
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197579398
    reference: chr 3
allele count: 3032
allele frequency: 2.497652272764717e-2
allele num: 121394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000395309
  ensembl transcript: ENST00000452660
  gene symbol: LRCH3
  hgvsc: ENST00000452660.1:c.64-34A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000400164
  ensembl transcript: ENST00000433298
  gene symbol: LRCH3
  hgvsc: ENST00000433298.1:c.22-34A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.316-34A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1531-34A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1531-34A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1447-34A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1531-34A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.1069-34A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000481048
  gene symbol: LRCH3
  hgvsc: ENST00000481048.1:n.200A>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.178-34A>G
  variant of: http://identifiers.org/hgnc/28637
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5744
  bin: 3.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 6783
  bin: 4.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 8.75e1
  variant carriers: 125
genotype depth: GenotypeDepth
  all individuals: 4098
  bin: 5.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 2.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 9.25e1
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 5541
  bin: 5.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 7.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 2.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7194
  bin: 4.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 6.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 7.75e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 2656
  bin: 6.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 9822
  bin: 9.75e1
  variant carriers: 1841
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 8.25e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 6692
  bin: 3.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42786
  bin: 9.75e1
  variant carriers: 2649
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 368
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum

3-197579399-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197579399
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197579399
    reference: chr 3
allele count: 5
allele frequency: 4.118955432902216e-5
allele num: 121390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1531-33C>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000400164
  ensembl transcript: ENST00000433298
  gene symbol: LRCH3
  hgvsc: ENST00000433298.1:c.22-33C>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.1069-33C>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000395309
  ensembl transcript: ENST00000452660
  gene symbol: LRCH3
  hgvsc: ENST00000452660.1:c.64-33C>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1531-33C>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1447-33C>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000481048
  gene symbol: LRCH3
  hgvsc: ENST00000481048.1:n.201C>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1531-33C>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.178-33C>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.316-33C>G
  variant of: http://identifiers.org/hgnc/28637
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5933
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8452
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4248
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7009
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7447
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5723
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6904
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2939
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42102
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-197579403-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197579403
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197579402
    reference: chr 3
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1447-23delT
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.1069-23delT
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.316-23delT
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000481048
  gene symbol: LRCH3
  hgvsc: ENST00000481048.1:n.211delT
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000395309
  ensembl transcript: ENST00000452660
  gene symbol: LRCH3
  hgvsc: ENST00000452660.1:c.64-23delT
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000400164
  ensembl transcript: ENST00000433298
  gene symbol: LRCH3
  hgvsc: ENST00000433298.1:c.22-23delT
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000399751
  ensembl transcript: ENST00000438796
  gene symbol: LRCH3
  hgvsc: ENST00000438796.2:c.1531-23delT
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1531-23delT
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1531-23delT
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.178-23delT
  variant of: http://identifiers.org/hgnc/28637
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6902
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5725
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3571
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7446
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7009
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8448
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5945
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4249
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3955
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: CT
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ

3-197579405-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 197579405
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 197579405
    reference: chr 3
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000400164
  ensembl transcript: ENST00000433298
  gene symbol: LRCH3
  hgvsc: ENST00000433298.1:c.22-27T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000393579
  ensembl transcript: ENST00000425562
  gene symbol: LRCH3
  hgvsc: ENST00000425562.2:c.1531-27T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000439083
  ensembl transcript: ENST00000536618
  gene symbol: LRCH3
  hgvsc: ENST00000536618.1:c.316-27T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394965
  ensembl transcript: ENST00000414675
  gene symbol: LRCH3
  hgvsc: ENST00000414675.2:c.1447-27T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000481048
  gene symbol: LRCH3
  hgvsc: ENST00000481048.1:n.207T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000395309
  ensembl transcript: ENST00000452660
  gene symbol: LRCH3
  hgvsc: ENST00000452660.1:c.64-27T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000394609
  ensembl transcript: ENST00000441090
  gene symbol: LRCH3
  hgvsc: ENST00000441090.2:c.1069-27T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl protein: ENSP00000334375
  ensembl transcript: ENST00000334859
  gene symbol: LRCH3
  hgvsc: ENST00000334859.4:c.1531-27T>G
  variant of: http://identifiers.org/hgnc/28637
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186001
  ensembl transcript: ENST00000461674
  gene symbol: LRCH3
  hgvsc: ENST00000461674.1:n.178-27T>G
  variant of: http://identifiers.org/hgnc/28637
canonical: false
consequence: non coding transcript exon
filter: PASS
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43028
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1999
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 7.5e0
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504121292341014e-5
allele num: 66484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16364
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.673e1

VQSLOD
type: SiteQuality
SIO_000300: 5.09e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

DP
type: SiteQuality
SIO_000300: 3.744253e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.46e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.42e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.29e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1243
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40181
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.858044164037855e-5
allele num: 10144
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16368
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66510
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.864e1

FS
type: SiteQuality
SIO_000300: 1.013e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.56e0

VQSLOD
type: SiteQuality
SIO_000300: -4.379e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 8.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-1

DP
type: SiteQuality
SIO_000300: 3.555927e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.219958521410272e-4
allele num: 16394
num of homozygotes: 0

African
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allele count: 119
allele frequency: 1.17056856187291e-2
allele num: 10166
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 101
allele frequency: 1.517427884615385e-3
allele num: 66560
num of homozygotes: 0

Latino
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allele count: 20
allele frequency: 1.728011059270779e-3
allele num: 11574
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

MQ
type: SiteQuality
SIO_000300: 5.955e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.43e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.84e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.56658e6

QD
type: SiteQuality
SIO_000300: 1.593e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2369
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 29
allele frequency: 4.360771104628432e-4
allele num: 66502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.932912391475928e-4
allele num: 10136
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.082e0

DP
type: SiteQuality
SIO_000300: 3.56217e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.653e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 1.6179e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.16e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.776e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.49e0

MQ
type: SiteQuality
SIO_000300: 5.648e1

QD
type: SiteQuality
SIO_000300: 4.03e0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 2254
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 61
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variant carriers: 0

African
type: Population
allele count: 6
allele frequency: 5.90434953749262e-4
allele num: 10162
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 29
allele frequency: 4.358018754508295e-4
allele num: 66544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.69e0

MQRankSum
type: SiteQuality
SIO_000300: -1.851e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.2e0

FS
type: SiteQuality
SIO_000300: 2.0683e1

DP
type: SiteQuality
SIO_000300: 3.564279e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.519e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.695e0

MQ
type: SiteQuality
SIO_000300: 5.663e1

GenotypeQuality
all individuals: 164
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variant carriers: 0

GenotypeQuality
all individuals: 35
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 28

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 27
allele frequency: 4.054784645882141e-4
allele num: 66588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 5.884660651235779e-4
allele num: 10196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.974e0

QD
type: SiteQuality
SIO_000300: 4.02e0

MQ
type: SiteQuality
SIO_000300: 5.675e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e0

DP
type: SiteQuality
SIO_000300: 3.568171e6

FS
type: SiteQuality
SIO_000300: 2.0094e1

MQRankSum
type: SiteQuality
SIO_000300: -2.104e0

VQSLOD
type: SiteQuality
SIO_000300: -5.732e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.056e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2227
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999220202747286e-5
allele num: 66684
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

VQSLOD
type: SiteQuality
SIO_000300: -2.02e0

QD
type: SiteQuality
SIO_000300: 1.514e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.87e0

FS
type: SiteQuality
SIO_000300: 3.703e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.893e1

DP
type: SiteQuality
SIO_000300: 3.568424e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.773e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.19e0

GenotypeQuality
all individuals: 1312
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499925003749813e-5
allele num: 66670
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.706853038245001e-5
allele num: 10302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.618e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.84e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.94e-1

FS
type: SiteQuality
SIO_000300: 1.77e1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.568818e6

QD
type: SiteQuality
SIO_000300: 4.71e0

VQSLOD
type: SiteQuality
SIO_000300: -9.66e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
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allele num: 10364
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East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
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allele num: 11576
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.044e0

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.036e1

MQ
type: SiteQuality
SIO_000300: 5.948e1

VQSLOD
type: SiteQuality
SIO_000300: 7.48e-1

DP
type: SiteQuality
SIO_000300: 3.569482e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.81e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2225
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.049097775912715e-4
allele num: 66724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.619084263178146e-5
allele num: 10396
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.454828122300915e-4
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.189e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

DP
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.590000000000001e-1

VQSLOD
type: SiteQuality
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MQ
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

BaseQRankSum
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SIO_000300: -2.713e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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QD
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DP
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FS
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

Other
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VQSLOD
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MQ
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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SIO_000300: -2.343e0

InbreedingCoeff
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FS
type: SiteQuality
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DP
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SIO_000300: 3.57053e6

QD
type: SiteQuality
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MQRankSum
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SIO_000300: -7.78e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

Other
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num of homozygotes: 0

DP
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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QD
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MQRankSum
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SIO_000300: 5.22e-1

MQ
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SIO_000300: 5.947e1

VQSLOD
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SIO_000300: 7.92e-1

FS
type: SiteQuality
SIO_000300: 1.746e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.023e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.8e-2

InbreedingCoeff
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SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 9.64e-1

QD
type: SiteQuality
SIO_000300: 6.54e0

DP
type: SiteQuality
SIO_000300: 3.570493e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.2e-1

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.76e1

VQSLOD
type: SiteQuality
SIO_000300: -2.133e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.43e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.2e-1

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.412e0

DP
type: SiteQuality
SIO_000300: 3.570552e6

MQ
type: SiteQuality
SIO_000300: 5.977e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.997691777331455e-5
allele num: 66718
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.46e-1

InbreedingCoeff
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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MQ
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FS
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DP
type: SiteQuality
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VQSLOD
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66716
num of homozygotes: 0

Other
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African
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MQRankSum
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QD
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BaseQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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Latino
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allele num: 11576
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Other
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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QD
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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DP
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MQ
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InbreedingCoeff
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FS
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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Latino
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South Asian
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MQ
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ReadPosRankSum
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VQSLOD
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FS
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BaseQRankSum
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ClippingRankSum
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DP
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MQRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 60
allele frequency: 5.183137525915688e-3
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.507e1

MQ
type: SiteQuality
SIO_000300: 5.948e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.69e0

MQRankSum
type: SiteQuality
SIO_000300: 2.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.12e0

DP
type: SiteQuality
SIO_000300: 3.568924e6

GenotypeQuality
all individuals: 107
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5300
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2373
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1243
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66640
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156871818602499e-4
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.027e1

DP
type: SiteQuality
SIO_000300: 3.549817e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.677e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.722e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.995e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2252
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GenotypeQuality
all individuals: 1244
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.828376401755241e-4
allele num: 16408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66628
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -8.557e-1

QD
type: SiteQuality
SIO_000300: 1.512e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.185e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.3e-1

MQ
type: SiteQuality
SIO_000300: 5.905e1

FS
type: SiteQuality
SIO_000300: 1.272e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.72e0

DP
type: SiteQuality
SIO_000300: 3.548092e6

GenotypeQuality
all individuals: 39
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1242
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 40172
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variant carriers: 3

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.654373431164318e-5
allele num: 10358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.003634397621121e-5
allele num: 66586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16346
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.547842e6

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

QD
type: SiteQuality
SIO_000300: 1.165e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

MQ
type: SiteQuality
SIO_000300: 5.943e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.4e-2

FS
type: SiteQuality
SIO_000300: 2.146e0

VQSLOD
type: SiteQuality
SIO_000300: 2.78e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.82e-1

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 651
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variant carriers: 0

GenotypeQuality
all individuals: 39
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variant carriers: 0

GenotypeQuality
all individuals: 460
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variant carriers: 0

GenotypeQuality
all individuals: 868
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2246
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501817198810561e-5
allele num: 66586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16346
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.78e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -5.4e-2

MQ
type: SiteQuality
SIO_000300: 5.943e1

DP
type: SiteQuality
SIO_000300: 3.547842e6

QD
type: SiteQuality
SIO_000300: 1.165e1

FS
type: SiteQuality
SIO_000300: 2.146e0

GenotypeQuality
all individuals: 650
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
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variant carriers: 0

GenotypeQuality
all individuals: 457
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GenotypeQuality
all individuals: 53
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variant carriers: 0

GenotypeQuality
all individuals: 664
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GenotypeQuality
all individuals: 940
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variant carriers: 0

GenotypeQuality
all individuals: 3325
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variant carriers: 0

GenotypeQuality
all individuals: 1055
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variant carriers: 0

GenotypeQuality
all individuals: 414
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variant carriers: 0

GenotypeQuality
all individuals: 2223
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502810255177181e-5
allele num: 66542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16308
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

QD
type: SiteQuality
SIO_000300: 1.693e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.4e0

VQSLOD
type: SiteQuality
SIO_000300: -8.801e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.177e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.296e0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e0

DP
type: SiteQuality
SIO_000300: 3.54702e6

GenotypeQuality
all individuals: 98
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variant carriers: 0

GenotypeQuality
all individuals: 1151
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1687
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variant carriers: 0

GenotypeQuality
all individuals: 1842
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.525413387027885e-5
allele num: 65556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14862
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.758396342535608e-4
allele num: 11374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.467e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.053e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.77e-1

QD
type: SiteQuality
SIO_000300: 1.243e1

DP
type: SiteQuality
SIO_000300: 1.647101e6

GenotypeQuality
all individuals: 912
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.641870350690754e-5
allele num: 15056
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65732
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.323e0

VQSLOD
type: SiteQuality
SIO_000300: 9.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.17e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.39e0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

QD
type: SiteQuality
SIO_000300: 1.059e1

DP
type: SiteQuality
SIO_000300: 1.690504e6

MQ
type: SiteQuality
SIO_000300: 5.917e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516392199678525e-5
allele num: 65946
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.242e1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.732562e6

MQRankSum
type: SiteQuality
SIO_000300: 2.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.83e-1

FS
type: SiteQuality
SIO_000300: 1.756e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.83e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 26
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16795141322121e-4
allele num: 8562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66074
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.4743e1

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.451e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.46e-1

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.74825e6

GenotypeQuality
all individuals: 6524
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2837
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1058
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1886
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.739730816290858e-5
allele num: 11442
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.85579332947754e-4
allele num: 10374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66132
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.750829e6

QD
type: SiteQuality
SIO_000300: 1.283e1

MQRankSum
type: SiteQuality
SIO_000300: 8.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.4e-3

FS
type: SiteQuality
SIO_000300: 4.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.98e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.9e-1

MQ
type: SiteQuality
SIO_000300: 5.998e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.06e-1

GenotypeQuality
all individuals: 824
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2364
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2853
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6525
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1059
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.618715083798883e-4
allele num: 11456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.7e-1

FS
type: SiteQuality
SIO_000300: 2.612e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.71e-1

DP
type: SiteQuality
SIO_000300: 1.757579e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.66e0

MQRankSum
type: SiteQuality
SIO_000300: 9.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.92e-1

QD
type: SiteQuality
SIO_000300: 1.085e1

GenotypeQuality
all individuals: 1059
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2364
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1887
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variant carriers: 0

GenotypeQuality
all individuals: 35697
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66204
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.646922631680494e-5
allele num: 10366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15846
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.92e-1

DP
type: SiteQuality
SIO_000300: 1.757579e6

FS
type: SiteQuality
SIO_000300: 2.612e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.66e0

MQRankSum
type: SiteQuality
SIO_000300: 9.3e-1

QD
type: SiteQuality
SIO_000300: 1.085e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.71e-1

GenotypeQuality
all individuals: 6527
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1890
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
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variant carriers: 0

GenotypeQuality
all individuals: 107
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variant carriers: 0

GenotypeQuality
all individuals: 1058
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variant carriers: 0

GenotypeQuality
all individuals: 136
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variant carriers: 0

GenotypeQuality
all individuals: 7067
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variant carriers: 0

GenotypeQuality
all individuals: 2848
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.015317814497648e-5
allele num: 66328
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16048
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.879999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.05e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

FS
type: SiteQuality
SIO_000300: 1.068e0

QD
type: SiteQuality
SIO_000300: 1.014e1

DP
type: SiteQuality
SIO_000300: 1.767626e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

GenotypeQuality
all individuals: 164
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2390
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 206
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variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36630
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variant carriers: 0

GenotypeQuality
all individuals: 96
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variant carriers: 0

GenotypeQuality
all individuals: 7159
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1892
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2859
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6528
bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16180
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.741553465691397e-4
allele num: 11484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66402
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.329e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

QD
type: SiteQuality
SIO_000300: 1.169e1

MQRankSum
type: SiteQuality
SIO_000300: 1.73e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.674e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

FS
type: SiteQuality
SIO_000300: 3.017e0

DP
type: SiteQuality
SIO_000300: 1.772611e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.96e-1

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2393
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 433
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variant carriers: 0

GenotypeQuality
all individuals: 74
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 1061
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.69414014953921e-5
allele num: 11502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16208
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66412
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.72e-2

QD
type: SiteQuality
SIO_000300: 1.24e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.72e-1

DP
type: SiteQuality
SIO_000300: 1.773746e6

GenotypeQuality
all individuals: 433
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2866
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 777
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variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2393
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1895
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16208
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66412
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.620935154897056e-5
allele num: 10394
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.3e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -5.72e-2

QD
type: SiteQuality
SIO_000300: 1.24e1

DP
type: SiteQuality
SIO_000300: 1.773746e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

GenotypeQuality
all individuals: 1894
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 2886
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variant carriers: 0

GenotypeQuality
all individuals: 215
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variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1058
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6526
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 777
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7249
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.676036786395974e-5
allele num: 11526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.32e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.45e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.264e0

QD
type: SiteQuality
SIO_000300: 1.257e1

FS
type: SiteQuality
SIO_000300: 1.569e0

MQRankSum
type: SiteQuality
SIO_000300: 3.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.783297e6

GenotypeQuality
all individuals: 1897
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6529
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2884
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 68
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GenotypeQuality
all individuals: 1056
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 37548
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499745043342632e-5
allele num: 66678
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-1

DP
type: SiteQuality
SIO_000300: 1.789939e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.177e0

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

QD
type: SiteQuality
SIO_000300: 1.346e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e-1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2431
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66678
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e-1

FS
type: SiteQuality
SIO_000300: 2.177e0

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

MQRankSum
type: SiteQuality
SIO_000300: -2.8e-1

DP
type: SiteQuality
SIO_000300: 1.789939e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.346e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 8

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 37592
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66696
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.847897224578839e-4
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e0

VQSLOD
type: SiteQuality
SIO_000300: 8.35e-1

QD
type: SiteQuality
SIO_000300: 1.133e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e-1

FS
type: SiteQuality
SIO_000300: 1.206e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

DP
type: SiteQuality
SIO_000300: 1.790813e6

GenotypeQuality
all individuals: 1888
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2881
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variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.791055e6

MQ
type: SiteQuality
SIO_000300: 5.858e1

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

FS
type: SiteQuality
SIO_000300: 3.728e0

QD
type: SiteQuality
SIO_000300: 1.195e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.024e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.55e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 7341
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 9.071666162685213e-4
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.648928196672163e-4
allele num: 66710
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.25e0

MQRankSum
type: SiteQuality
SIO_000300: 4.16e-1

DP
type: SiteQuality
SIO_000300: 1.79185e6

MQ
type: SiteQuality
SIO_000300: 5.944e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.37e-1

FS
type: SiteQuality
SIO_000300: 5.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.396e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.86e-1

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2424
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.655011251514626e-5
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.619999999999999e0

FS
type: SiteQuality
SIO_000300: 3.66e0

MQ
type: SiteQuality
SIO_000300: 5.841e1

MQRankSum
type: SiteQuality
SIO_000300: 8.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.537e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.306e0

DP
type: SiteQuality
SIO_000300: 1.791335e6

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 13
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.496402877697842e-5
allele num: 66720
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.028834504482675e-4
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.24e-1

FS
type: SiteQuality
SIO_000300: 5.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.64e-1

QD
type: SiteQuality
SIO_000300: 1.294e1

MQ
type: SiteQuality
SIO_000300: 5.924e1

DP
type: SiteQuality
SIO_000300: 1.791752e6

GenotypeQuality
all individuals: 37649
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2424
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GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997512064986062e-5
allele num: 66722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

East Asian
type: Population
allele count: 10
allele frequency: 1.157139551029854e-3
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.11e-1

FS
type: SiteQuality
SIO_000300: 1.767e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

QD
type: SiteQuality
SIO_000300: 1.251e1

VQSLOD
type: SiteQuality
SIO_000300: 2.82e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.43e-1

DP
type: SiteQuality
SIO_000300: 1.792486e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.05e-1

GenotypeQuality
all individuals: 33
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.56e0

DP
type: SiteQuality
SIO_000300: 1.792065e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.33e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.3e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

FS
type: SiteQuality
SIO_000300: 1.1869e1

QD
type: SiteQuality
SIO_000300: 1.283e1

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 16
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GenotypeQuality
all individuals: 1887
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.729804532087874e-4
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997422216893472e-5
allele num: 66724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.951e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.792244e6

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.27e-1

FS
type: SiteQuality
SIO_000300: 1.835e0

VQSLOD
type: SiteQuality
SIO_000300: 2.74e0

MQRankSum
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SIO_000300: 4.15e-1

BaseQRankSum
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SIO_000300: 2.54e0

QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997422216893472e-5
allele num: 66724
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.58e0

FS
type: SiteQuality
SIO_000300: 1.205e0

QD
type: SiteQuality
SIO_000300: 1.376e1

DP
type: SiteQuality
SIO_000300: 1.792397e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.79e-1

InbreedingCoeff
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SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

Latino
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allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.493780162465154e-5
allele num: 66722
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.485e1

MQ
type: SiteQuality
SIO_000300: 5.974e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.47e0

DP
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MQRankSum
type: SiteQuality
SIO_000300: -1.09e-1

ClippingRankSum
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FS
type: SiteQuality
SIO_000300: 1.097e0

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.45e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

QD
type: SiteQuality
SIO_000300: 1.283e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 5.536e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.59e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.85e-1

DP
type: SiteQuality
SIO_000300: 1.792239e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.05e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.86e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499385252046661e-5
allele num: 66694
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.174e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.52e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.15e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

DP
type: SiteQuality
SIO_000300: 1.791331e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.12e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.15e-1

QD
type: SiteQuality
SIO_000300: 1.36e1

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 8.103727714748784e-4
allele num: 8638
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
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VQSLOD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e-2

MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.154e0

DP
type: SiteQuality
SIO_000300: 1.789794e6

BaseQRankSum
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SIO_000300: -1.869e0

MQRankSum
type: SiteQuality
SIO_000300: -1.75e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
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allele frequency: 3.847633705271258e-3
allele num: 10396
num of homozygotes: 0

Latino
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allele num: 11520
num of homozygotes: 0

Other
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South Asian
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.92e-1

VQSLOD
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DP
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FS
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QD
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ClippingRankSum
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MQ
type: SiteQuality
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MQRankSum
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SIO_000300: 1.68e-1

InbreedingCoeff
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
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num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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num of homozygotes: 0

Other
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.503442884204829e-5
allele num: 66514
num of homozygotes: 0

VQSLOD
type: SiteQuality
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FS
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QD
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MQ
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MQRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.505751972535084e-5
allele num: 66412
num of homozygotes: 0

Latino
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South Asian
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Other
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DP
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SIO_000300: 1.768385e6

VQSLOD
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.26e-1

QD
type: SiteQuality
SIO_000300: 2.29e1

MQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

FS
type: SiteQuality
SIO_000300: 2.413e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.101e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.948e1

GenotypeQuality
all individuals: 160
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1867
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35075
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 997
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2311
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6511
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2789
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6978
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.633911368015414e-5
allele num: 10380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505978735580254e-5
allele num: 66402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.814e0

MQ
type: SiteQuality
SIO_000300: 5.884e1

VQSLOD
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.243e1

MQRankSum
type: SiteQuality
SIO_000300: 5.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.9e-2

DP
type: SiteQuality
SIO_000300: 1.766136e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.996e0

GenotypeQuality
all individuals: 260
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6511
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 259
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
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GenotypeQuality
all individuals: 1450
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2272
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variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1049
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1044
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 787
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1859
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33518
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507477086348288e-5
allele num: 66336
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.405e0

QD
type: SiteQuality
SIO_000300: 1.194e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.908e0

VQSLOD
type: SiteQuality
SIO_000300: 3.52e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.749022e6

GenotypeQuality
all individuals: 640
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 29827
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 627
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6999
bin: 9.75e1
variant carriers: 712

GenotypeQuality
all individuals: 6191
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2147
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1876
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2050
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1801
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 595
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1020
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2616
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.208240198151393e-4
allele num: 66212
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.114711997064938e-5
allele num: 16354
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.217294900221729e-3
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 32
allele frequency: 3.75234521575985e-3
allele num: 8528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Latino
type: Population
allele count: 32
allele frequency: 2.801610926282613e-3
allele num: 11422
num of homozygotes: 0

African
type: Population
allele count: 666
allele frequency: 6.431054461181923e-2
allele num: 10356
num of homozygotes: 20

QD
type: SiteQuality
SIO_000300: 1.442e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.13e-1

FS
type: SiteQuality
SIO_000300: 8.139999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.81e0

MQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.305e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.98e-2

MQ
type: SiteQuality
SIO_000300: 5.973e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

DP
type: SiteQuality
SIO_000300: 1.737603e6

GenotypeQuality
all individuals: 744
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2601
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1686
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1226
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6483
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1346
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2091
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 5764
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variant carriers: 0

GenotypeQuality
all individuals: 2569
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1790
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3043
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1042
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 15
allele frequency: 1.763461086292029e-3
allele num: 8506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66156
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.118453255017132e-5
allele num: 16344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.308e0

VQSLOD
type: SiteQuality
SIO_000300: 2.73e0

FS
type: SiteQuality
SIO_000300: 1.124e0

MQRankSum
type: SiteQuality
SIO_000300: 2.46e-1

DP
type: SiteQuality
SIO_000300: 1.683984e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-2

QD
type: SiteQuality
SIO_000300: 1.25e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

GenotypeQuality
all individuals: 1982
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1037
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1210
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
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variant carriers: 0

GenotypeQuality
all individuals: 6465
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2557
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
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variant carriers: 0

GenotypeQuality
all individuals: 3992
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variant carriers: 0

GenotypeQuality
all individuals: 2525
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variant carriers: 0

GenotypeQuality
all individuals: 3542
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variant carriers: 0

GenotypeQuality
all individuals: 2685
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variant carriers: 0

GenotypeQuality
all individuals: 96
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GenotypeQuality
all individuals: 5172
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variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 480
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variant carriers: 0

GenotypeQuality
all individuals: 1999
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.13421666053245e-5
allele num: 16302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11358
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65988
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.76e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.693e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.634e0

QD
type: SiteQuality
SIO_000300: 1.176e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.033e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

DP
type: SiteQuality
SIO_000300: 1.660127e6

GenotypeQuality
all individuals: 96
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4681
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3916
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1768
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1037
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1948
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variant carriers: 0

GenotypeQuality
all individuals: 2050
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4993
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18414
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2769
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2509
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2061
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.147037128104254e-5
allele num: 16268
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.7e-2

MQ
type: SiteQuality
SIO_000300: 5.836e1

VQSLOD
type: SiteQuality
SIO_000300: -1.762e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.74e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.67e-1

QD
type: SiteQuality
SIO_000300: 1.084e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-3

DP
type: SiteQuality
SIO_000300: 1.638572e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.67e-1

GenotypeQuality
all individuals: 2687
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6467
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 137
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 804
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15601
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4040
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2101
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1035
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2492
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4686
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4856
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3209
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 744
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1916
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522394421946838e-5
allele num: 65686
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.865248226950355e-5
allele num: 11280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16186
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 1.066511537715726e-3
allele num: 10314
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.41e-1

FS
type: SiteQuality
SIO_000300: 1.179e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.65e-1

DP
type: SiteQuality
SIO_000300: 1.630205e6

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

MQRankSum
type: SiteQuality
SIO_000300: -4.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.993e0

QD
type: SiteQuality
SIO_000300: 1.353e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2303
bin: 6.75e1
variant carriers: 1078

GenotypeQuality
all individuals: 954
bin: 5.75e1
variant carriers: 590

GenotypeQuality
all individuals: 1840
bin: 5.25e1
variant carriers: 1024

GenotypeQuality
all individuals: 2282
bin: 3.75e1
variant carriers: 509

GenotypeQuality
all individuals: 5318
bin: 6.25e1
variant carriers: 1177

GenotypeQuality
all individuals: 1347
bin: 2.25e1
variant carriers: 185

GenotypeQuality
all individuals: 1459
bin: 4.25e1
variant carriers: 385

GenotypeQuality
all individuals: 252
bin: 1.25e1
variant carriers: 89

GenotypeQuality
all individuals: 1936
bin: 3.25e1
variant carriers: 326

GenotypeQuality
all individuals: 1052
bin: 2.75e1
variant carriers: 189

GenotypeQuality
all individuals: 335
bin: 1.75e1
variant carriers: 119

GenotypeQuality
all individuals: 975
bin: 9.25e1
variant carriers: 689

GenotypeQuality
all individuals: 1612
bin: 7.75e1
variant carriers: 945

GenotypeQuality
all individuals: 1312
bin: 8.25e1
variant carriers: 860

GenotypeQuality
all individuals: 32991
bin: 9.75e1
variant carriers: 30807

GenotypeQuality
all individuals: 589
bin: 8.75e1
variant carriers: 386

Other
type: Population
allele count: 365
allele frequency: 4.166666666666667e-1
allele num: 876
num of homozygotes: 78

European (Finnish)
type: Population
allele count: 2781
allele frequency: 4.314303443996277e-1
allele num: 6446
num of homozygotes: 586

East Asian
type: Population
allele count: 3944
allele frequency: 4.832148983092379e-1
allele num: 8162
num of homozygotes: 933

African
type: Population
allele count: 1449
allele frequency: 1.417253521126761e-1
allele num: 10224
num of homozygotes: 98

Latino
type: Population
allele count: 4060
allele frequency: 3.713867544822539e-1
allele num: 10932
num of homozygotes: 711

European (Non-Finnish)
type: Population
allele count: 30794
allele frequency: 4.763333745823536e-1
allele num: 64648
num of homozygotes: 7227

South Asian
type: Population
allele count: 8705
allele frequency: 5.385424399901014e-1
allele num: 16164
num of homozygotes: 2362

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.91e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.48e-2

QD
type: SiteQuality
SIO_000300: 2.303e1

DP
type: SiteQuality
SIO_000300: 1.740088e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.19e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3992
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.544258447093706e-5
allele num: 64756
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8158
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11082
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15932
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.69e-1

DP
type: SiteQuality
SIO_000300: 1.613501e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.64e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.82e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.11e0

QD
type: SiteQuality
SIO_000300: 1.684e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.818092e6

FS
type: SiteQuality
SIO_000300: 1.49e0

QD
type: SiteQuality
SIO_000300: 1.508e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.039999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 2.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1356
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.79e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.37e-1

DP
type: SiteQuality
SIO_000300: 3.81878e6

MQRankSum
type: SiteQuality
SIO_000300: -4.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.149e0

QD
type: SiteQuality
SIO_000300: 2.585e1

FS
type: SiteQuality
SIO_000300: 5.774e0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 35
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GenotypeQuality
all individuals: 2840
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.939e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.207e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.77e0

DP
type: SiteQuality
SIO_000300: 3.818925e6

FS
type: SiteQuality
SIO_000300: 3.43e0

QD
type: SiteQuality
SIO_000300: 1.341e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.763e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.62e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 2735
allele frequency: 2.630313521831121e-1
allele num: 10398
num of homozygotes: 367

European (Non-Finnish)
type: Population
allele count: 165
allele frequency: 2.472650981567511e-3
allele num: 66730
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 6
allele frequency: 6.607929515418502e-3
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.422480620155039e-4
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 122
allele frequency: 1.053722577301779e-2
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.73e1

DP
type: SiteQuality
SIO_000300: 3.874533e6

VQSLOD
type: SiteQuality
SIO_000300: 7.53e0

FS
type: SiteQuality
SIO_000300: 1.429e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.047e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.36e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.74e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.493106342165208e-5
allele num: 66728
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.400000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

DP
type: SiteQuality
SIO_000300: 3.731018e6

VQSLOD
type: SiteQuality
SIO_000300: 8.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 7.341e0

QD
type: SiteQuality
SIO_000300: 1.418e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.35e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1397
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.89e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.021e0

DP
type: SiteQuality
SIO_000300: 3.730912e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.92e-1

FS
type: SiteQuality
SIO_000300: 3.646e0

QD
type: SiteQuality
SIO_000300: 1.08e1

MQ
type: SiteQuality
SIO_000300: 5.959e1